MC02g0993 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0993
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	MC02: 7965047 .. 7965220 (-)
RNA-Seq Expression	MC02g0993
Synteny	MC02g0993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCTAGTCCTAGACAGACAAGCTTAACTTTGACAACAAGTACCATGATAATGAAAATGACTCTTACTTTAATAAGATTATATGACCAAATACGTGAACCAAAAGATGTTATCGCTATGGGACCATGTACAATCACAGGAGGGATGTCCAGTACCAATTCATATAGTAATTTA

mRNA sequence

AGATCTAGTCCTAGACAGACAAGCTTAACTTTGACAACAAGTACCATGATAATGAAAATGACTCTTACTTTAATAAGATTATATGACCAAATACGTGAACCAAAAGATGTTATCGCTATGGGACCATGTACAATCACAGGAGGGATGTCCAGTACCAATTCATATAGTAATTTA

Coding sequence (CDS)

AGATCTAGTCCTAGACAGACAAGCTTAACTTTGACAACAAGTACCATGATAATGAAAATGACTCTTACTTTAATAAGATTATATGACCAAATACGTGAACCAAAAGATGTTATCGCTATGGGACCATGTACAATCACAGGAGGGATGTCCAGTACCAATTCATATAGTAATTTA

Protein sequence

RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL

Homology

[Close]

BLAST of MC02g0993 vs. ExPASy Swiss-Prot
Match: A6MML1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Dioscorea elephantipes OX=145284 GN=ndhK PE=3 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 59
           RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. ExPASy Swiss-Prot
Match: Q06FV6 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Pelargonium hortorum OX=4031 GN=ndhK PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 59
           RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. ExPASy Swiss-Prot
Match: Q2MII3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=ndhK PE=3 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 59
           RSSPRQ+ L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. ExPASy Swiss-Prot
Match: Q2MI96 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum lycopersicum OX=4081 GN=ndhK PE=3 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 59
           RSSPRQ+ L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. ExPASy Swiss-Prot
Match: Q2VEH3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum tuberosum OX=4113 GN=ndhK PE=3 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-13
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 59
           RSSPRQ+ L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. NCBI nr
Match: KAF9593771.1 (hypothetical protein IFM89_025396 [Coptis chinensis])

HSP 1 Score: 72.4 bits (176), Expect = 1.03e-14
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYS 56
          RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS
Sbjct: 39 RSSPRQVDLILTAGTVTMKMAPSLVRLYEQMHEPKYVIAMGACTITGGMFSTDSYS 94

[Close]

BLAST of MC02g0993 vs. NCBI nr
Match: RZC63600.1 (hypothetical protein C5167_025379 [Papaver somniferum])

HSP 1 Score: 74.3 bits (181), Expect = 1.35e-14
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
           RSSPRQ  L LT  T+ MKM  +L+RLY+QI EPK VIAMG CTITGGM ST+SYS +
Sbjct: 93  RSSPRQADLILTAGTVTMKMAPSLVRLYEQIPEPKHVIAMGACTITGGMFSTDSYSTI 150

[Close]

BLAST of MC02g0993 vs. NCBI nr
Match: YP_009403327.1 (NADH dehydrogenase subunit K [Diastatea micrantha] >ASA34520.1 NADH dehydrogenase subunit K [Diastatea micrantha])

HSP 1 Score: 74.7 bits (182), Expect = 1.81e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
           RSSPRQT L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQTDLILTAGTVTMKMAPSLVRLYEQLPEPKYVIAMGACTITGGMFSTDSYSTI 123

[Close]

BLAST of MC02g0993 vs. NCBI nr
Match: PHT96367.1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Capsicum chinense])

HSP 1 Score: 73.9 bits (180), Expect = 1.91e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
           RSSPRQT L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQTDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. NCBI nr
Match: KAF5195198.1 (Nadh-quinone oxidoreductase subunit b, partial [Thalictrum thalictroides])

HSP 1 Score: 72.0 bits (175), Expect = 2.08e-14
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
          RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 22 RSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 79

[Close]

BLAST of MC02g0993 vs. ExPASy TrEMBL
Match: A0A251TGH7 (Putative NADH:ubiquinone oxidoreductase-like, 20kDa subunit OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0285311 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.23e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
          RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 19 RSSPRQADLILTAGTITMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 76

[Close]

BLAST of MC02g0993 vs. ExPASy TrEMBL
Match: A0A4Y7JU80 (Oxidored_q6 domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_025379 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.55e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
           RSSPRQ  L LT  T+ MKM  +L+RLY+QI EPK VIAMG CTITGGM ST+SYS +
Sbjct: 93  RSSPRQADLILTAGTVTMKMAPSLVRLYEQIPEPKHVIAMGACTITGGMFSTDSYSTI 150

[Close]

BLAST of MC02g0993 vs. ExPASy TrEMBL
Match: A0A1Z2QSW5 (NADH-quinone oxidoreductase subunit B OS=Diastatea micrantha OX=368674 GN=ndhK PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.75e-15
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
           RSSPRQT L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQTDLILTAGTVTMKMAPSLVRLYEQLPEPKYVIAMGACTITGGMFSTDSYSTI 123

[Close]

BLAST of MC02g0993 vs. ExPASy TrEMBL
Match: A0A2G3AQ67 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Capsicum chinense OX=80379 GN=BC332_34708 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.22e-15
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
           RSSPRQT L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQTDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. ExPASy TrEMBL
Match: A0A7J6WEB2 (Nadh-quinone oxidoreductase subunit b (Fragment) OS=Thalictrum thalictroides OX=46969 GN=FRX31_015215 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.01e-14
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 58
          RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 22 RSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 79

[Close]

BLAST of MC02g0993 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-14
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGGMSSTNSYSNL 59
           RSSPRQ  L LT  T+ MKM  +L+RLY+Q+ EPK VIAMG CTITGGM ST+SYS +
Sbjct: 66  RSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123

[Close]

BLAST of MC02g0993 vs. TAIR 10
Match: AT5G11770.1 (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial )

HSP 1 Score: 40.8 bits (94), Expect = 4.3e-04
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 1   RSSPRQTSLTLTTSTMIMKMTLTLIRLYDQIREPKDVIAMGPCTITGG 49
           R SPRQ+   +   T+  KM   L ++YDQ+ EP+ VI+MG C   GG
Sbjct: 116 RPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGG 163

The following BLAST results are available for this feature:

BLAST of MC02g0993 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MML1	6.5e-13	65.52	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Dioscorea elephantipe...	[more]
Q06FV6	6.5e-13	65.52	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Pelargonium hortorum ...	[more]
Q2MII3	6.5e-13	65.52	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum bulbocastanum...	[more]
Q2MI96	6.5e-13	65.52	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum lycopersicum ...	[more]
Q2VEH3	6.5e-13	65.52	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum tuberosum OX=...	[more]

BLAST of MC02g0993 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9593771.1	1.03e-14	67.86	hypothetical protein IFM89_025396 [Coptis chinensis]	[more]
RZC63600.1	1.35e-14	67.24	hypothetical protein C5167_025379 [Papaver somniferum]	[more]
YP_009403327.1	1.81e-14	67.24	NADH dehydrogenase subunit K [Diastatea micrantha] >ASA34520.1 NADH dehydrogenas...	[more]
PHT96367.1	1.91e-14	67.24	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Capsicum chinense]	[more]
KAF5195198.1	2.08e-14	65.52	Nadh-quinone oxidoreductase subunit b, partial [Thalictrum thalictroides]	[more]

BLAST of MC02g0993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251TGH7	4.23e-15	65.52	Putative NADH:ubiquinone oxidoreductase-like, 20kDa subunit OS=Helianthus annuus...	[more]
A0A4Y7JU80	6.55e-15	67.24	Oxidored_q6 domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_025...	[more]
A0A1Z2QSW5	8.75e-15	67.24	NADH-quinone oxidoreductase subunit B OS=Diastatea micrantha OX=368674 GN=ndhK P...	[more]
A0A2G3AQ67	9.22e-15	67.24	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Capsicum chinense OX=...	[more]
A0A7J6WEB2	1.01e-14	65.52	Nadh-quinone oxidoreductase subunit b (Fragment) OS=Thalictrum thalictroides OX=...	[more]

BLAST of MC02g0993 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	6.0e-14	65.52	photosystem II reaction center protein G	[more]
AT5G11770.1	4.3e-04	43.75	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12280		coord: 1..58 e-value: 1.3E-12 score: 49.2
None	No IPR available	PANTHER	PTHR11995:SF14	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	coord: 1..56
None	No IPR available	PANTHER	PTHR11995	NADH DEHYDROGENASE	coord: 1..56
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0993.1	MC02g0993.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015990	electron transport coupled proton transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding