MC02g0610 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0610
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protodermal factor 1-like
Location	MC02: 4896561 .. 4898117 (-)
RNA-Seq Expression	MC02g0610
Synteny	MC02g0610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAAACAATTTATAATCATGTATCCTAATAGCTATATTATGGAGACCATTTCTAATAATTTCTCAGGAGAAGAGAGTGAGAGGAATTCAAAATTTAAAAAGTAGAATGGCATGTGATTTCATCTGTGATCGCTTGAAAATGTTAACATTATTTGAATTGAACACAATAAAAGCAGTAAGCAATATTAATAAATGCACCAATAAAACAGCAACTAACCACATACTCCTCCACCTGTAAGGAGTAACTTCACTTCACTTCCTCCAACCCCTTTATAATCCCTCTGTTCCAAACATTCCACCCACCATTAGCCTTCTTTCCCATTTCCCATTTCCCTTTGCTCCAAACAGAAACCATGAGAAGCAAACAAGCCTCTGCTCTCCTGTTCACTTTGCTTGCTGGGCTGCTCTCTCACAGCCTGGTCATCCCTGTATTCTCCTCCACCATTGCAGACCAGAAAAGCTATTACTCTCCAGACCCACATGCCGGAACTCCCCCAACAGGTCAGTCACTCAGACATTCACAAAAAAACACACTTAGTAGTTCAAGATCAAGATAGTAGATAGTAGTAGACTTACAACAATCCACATTTTGCATTGCAGGTACCCACAACAACCCTATGCCGCCGCCACATGGCTATGGAGGCACGCCACCGCATCAGCCCACGCCTACGCCTTCGACACCGTTGAACCCCCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCTGGTGGTGGTAGCCCACCAACCACCCCTGTTGATCCCGGCACTCCGAGCATTCCAAGCACTCCACCCCCTGCTCCATTCACTGGTACCTGCAAGTAAGTCACTTACAGTAACTGTTTCCATGGAGAAGAAACCATCATCCTTTTTTCCTTTTTTGTTTGTTAAAGGTATGTGTGTTTGTTTGCAGTTATTGGCTGAATCACCCAGGAATGATATGGGGAGTGTTGGGATGGTGGGGAACGTTGGGAAATGCCTTTGGAGCAACTAATGTCCCAGGTTTTGGAACAAACCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCATTCTCCGAGAAGGCACTGCTTCGTACCTCAATTCTCTTGCCAACAACAGCTTCCCCTTCACAACCAAGCAAGTTAGATCAAGTTTTGTGTCAGCACTTAGCTCCAACAAAGCAGCAGCAGATCAGGCCAAGGTCTTTAAGTTAGCCAACGAGGGCAAACTTAAGCCCAGAGCCTGATCTGGCCCCGCGTTGCCTTACCCTTACCACCCTAATAATTTGTGTGCGCGCCTTAGTAGTCAGTAGTGAGACAGTGAGACCAATTGACCAGTGCATTGTCTTGTTTTGTTTTGTTTTCATTTGTTGTTGTTTGTACCCTGCATCTCTCGATGTTCATGTATTTGAACATCGAAATGCTCGGTCTTTGTTTTCCATATTCATTGTCACAAGATTTGTTCCAAGTAGTTCATTTTGATTAATCAGAGTTTATCTAGAAATGGGTTGCAATTAACAGCATGGACGCTTGCTTTCTGCAGTAATCCACCGTTT

mRNA sequence

GAAAGAAACAATTTATAATCATGTATCCTAATAGCTATATTATGGAGACCATTTCTAATAATTTCTCAGGAGAAGAGAGTGAGAGGAATTCAAAATTTAAAAAGTAGAATGGCATGTGATTTCATCTGTGATCGCTTGAAAATGTTAACATTATTTGAATTGAACACAATAAAAGCAGTAAGCAATATTAATAAATGCACCAATAAAACAGCAACTAACCACATACTCCTCCACCTGTAAGGAGTAACTTCACTTCACTTCCTCCAACCCCTTTATAATCCCTCTGTTCCAAACATTCCACCCACCATTAGCCTTCTTTCCCATTTCCCATTTCCCTTTGCTCCAAACAGAAACCATGAGAAGCAAACAAGCCTCTGCTCTCCTGTTCACTTTGCTTGCTGGGCTGCTCTCTCACAGCCTGGTCATCCCTGTATTCTCCTCCACCATTGCAGACCAGAAAAGCTATTACTCTCCAGACCCACATGCCGGAACTCCCCCAACAGGTACCCACAACAACCCTATGCCGCCGCCACATGGCTATGGAGGCACGCCACCGCATCAGCCCACGCCTACGCCTTCGACACCGTTGAACCCCCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCTGGTGGTGGTAGCCCACCAACCACCCCTGTTGATCCCGGCACTCCGAGCATTCCAAGCACTCCACCCCCTGCTCCATTCACTGGTACCTGCAATTATTGGCTGAATCACCCAGGAATGATATGGGGAGTGTTGGGATGGTGGGGAACGTTGGGAAATGCCTTTGGAGCAACTAATGTCCCAGGTTTTGGAACAAACCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCATTCTCCGAGAAGGCACTGCTTCGTACCTCAATTCTCTTGCCAACAACAGCTTCCCCTTCACAACCAAGCAAGTTAGATCAAGTTTTGTGTCAGCACTTAGCTCCAACAAAGCAGCAGCAGATCAGGCCAAGGTCTTTAAGTTAGCCAACGAGGGCAAACTTAAGCCCAGAGCCTGATCTGGCCCCGCGTTGCCTTACCCTTACCACCCTAATAATTTGTGTGCGCGCCTTAGTAGTCAGTAGTGAGACAGTGAGACCAATTGACCAGTGCATTGTCTTGTTTTGTTTTGTTTTCATTTGTTGTTGTTTGTACCCTGCATCTCTCGATGTTCATGTATTTGAACATCGAAATGCTCGGTCTTTGTTTTCCATATTCATTGTCACAAGATTTGTTCCAAGTAGTTCATTTTGATTAATCAGAGTTTATCTAGAAATGGGTTGCAATTAACAGCATGGACGCTTGCTTTCTGCAGTAATCCACCGTTT

Coding sequence (CDS)

ATGAGAAGCAAACAAGCCTCTGCTCTCCTGTTCACTTTGCTTGCTGGGCTGCTCTCTCACAGCCTGGTCATCCCTGTATTCTCCTCCACCATTGCAGACCAGAAAAGCTATTACTCTCCAGACCCACATGCCGGAACTCCCCCAACAGGTACCCACAACAACCCTATGCCGCCGCCACATGGCTATGGAGGCACGCCACCGCATCAGCCCACGCCTACGCCTTCGACACCGTTGAACCCCCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCTGGTGGTGGTAGCCCACCAACCACCCCTGTTGATCCCGGCACTCCGAGCATTCCAAGCACTCCACCCCCTGCTCCATTCACTGGTACCTGCAATTATTGGCTGAATCACCCAGGAATGATATGGGGAGTGTTGGGATGGTGGGGAACGTTGGGAAATGCCTTTGGAGCAACTAATGTCCCAGGTTTTGGAACAAACCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCATTCTCCGAGAAGGCACTGCTTCGTACCTCAATTCTCTTGCCAACAACAGCTTCCCCTTCACAACCAAGCAAGTTAGATCAAGTTTTGTGTCAGCACTTAGCTCCAACAAAGCAGCAGCAGATCAGGCCAAGGTCTTTAAGTTAGCCAACGAGGGCAAACTTAAGCCCAGAGCCTGA

Protein sequence

MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPHGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA

Homology

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BLAST of MC02g0610 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.3e-47
Identity = 133/302 (44.04%), Postives = 160/302 (52.98%), Query Frame = 0


Query: 7   SALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHA--GTPPT--------------- 66
           S  ++ L A LLS  L   V S    D K+YY   P    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GTHNNPMPPPH---------------------------------GYGGTPPHQPTPTP 126
              T ++P PP H                                  +  TP H  TP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPLNPPSGGGGYYN-----------PPSS--------GGGSPPTTPVDPGTPSIPSTPP 186
            TP +PPS  GGYY+           PPS          GGSPPT  +DPGTP  P  P 
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA 185

Query: 187 P-APFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALSNTRT 233
           P  P TGTC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQALSNTR+
Sbjct: 186 PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRS 245

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BLAST of MC02g0610 vs. NCBI nr
Match: XP_022149747.1 (protodermal factor 1-like [Momordica charantia])

HSP 1 Score: 459 bits (1182), Expect = 5.38e-163
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPH 60
           MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPH
Sbjct: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPH 60

Query: 61  GYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFT 120
           GYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFT
Sbjct: 61  GYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFT 120

Query: 121 GTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREG 180
           GTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREG
Sbjct: 121 GTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREG 180

Query: 181 TASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA 233
           TASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA
Sbjct: 181 TASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA 233

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BLAST of MC02g0610 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 385 bits (990), Expect = 1.46e-133
Identity = 203/246 (82.52%), Postives = 217/246 (88.21%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP--DPHAGTPPTGTHNNPMPP 60
           MR+KQAS LLFTLLAGLLS SL+IPVFS++IADQKSYYSP  DPH+GTPPTG+H++P+PP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  PHGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP---- 120
            HGYGG+PPH  TPTPSTP  PPS GGGYYNPPSSGGGSPPTTPVDPGTPS PSTP    
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGVPS 120

Query: 121 -------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSN 180
                  P  PFT  CNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSN
Sbjct: 121 TPSTPSIPTTPFT--CNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSN 180

Query: 181 TRTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEG 233
           TRTDGFGA+LREGTASYLNSLA+N FPFTTKQVR+SFVSALSSNKAAADQA  FKLANEG
Sbjct: 181 TRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEG 240

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BLAST of MC02g0610 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 360 bits (923), Expect = 2.88e-123
Identity = 194/251 (77.29%), Postives = 208/251 (82.87%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MR+KQAS LLFTLLAGLLS SL+IPV S+TIADQKSYYSP DPHAGTPPTG+H+NP+PP 
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HGYGGTPPH  TPTPSTP   PSGG GYYNPPS  GGS PTTPVDPGTPS PSTP     
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 ---------------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNL 180
                          P  PFT  CN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFT--CNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAK 230
           NLLQALSNTR DGFGA+LREGTASYLNSLA+N FPFTTKQV+SSFVSAL+SN+AAADQA 
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

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BLAST of MC02g0610 vs. NCBI nr
Match: XP_004143175.1 (protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_020699 [Cucumis sativus])

HSP 1 Score: 359 bits (921), Expect = 4.23e-123
Identity = 193/245 (78.78%), Postives = 212/245 (86.53%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MRSKQ SAL+FTLLAGLLS SL+IPV S++IADQKSYYSP DPH+G+PP+G+H++PMPP 
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HG GGT PH  TPTPSTP NPPSGGGGYYNPPSSGG SPP+TPVDPGTPS PSTP     
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSSGG-SPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT 180
                 P  PFT  C YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT
Sbjct: 121 PTTPTIPTIPFT--CTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT 180

Query: 181 RTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGK 233
           R DG+GA+LREGTASYLNSLA+N FP+TTKQVR+SFVSALSSNKAA +QA  FKLANEGK
Sbjct: 181 RNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGK 240

[Close]

BLAST of MC02g0610 vs. NCBI nr
Match: KAG6604731.1 (Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357 bits (917), Expect = 2.36e-122
Identity = 193/251 (76.89%), Postives = 207/251 (82.47%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MR+KQAS LLFTLLAGLLS SL+IPV S+TIADQKSYYSP DPHAGTPPTG+H+NP+PP 
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HGYGGTPPH  TPTPSTP   PS G GYYNPPS  GGS PTTPVDPGTPS PSTP     
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 ---------------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNL 180
                          P  PFT  CN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFT--CNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAK 230
           NLLQALSNTR DGFGA+LREGTASYLNSLA+N FPFTTKQV+SSFVSAL+SN+AAADQA 
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

[Close]

BLAST of MC02g0610 vs. ExPASy TrEMBL
Match: A0A6J1D8U7 (protodermal factor 1-like OS=Momordica charantia OX=3673 GN=LOC111018104 PE=4 SV=1)

HSP 1 Score: 459 bits (1182), Expect = 2.60e-163
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPH 60
           MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPH
Sbjct: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHAGTPPTGTHNNPMPPPH 60

Query: 61  GYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFT 120
           GYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFT
Sbjct: 61  GYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTPPPAPFT 120

Query: 121 GTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREG 180
           GTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREG
Sbjct: 121 GTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAILREG 180

Query: 181 TASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA 233
           TASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA
Sbjct: 181 TASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA 233

[Close]

BLAST of MC02g0610 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 360 bits (923), Expect = 1.39e-123
Identity = 194/251 (77.29%), Postives = 208/251 (82.87%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MR+KQAS LLFTLLAGLLS SL+IPV S+TIADQKSYYSP DPHAGTPPTG+H+NP+PP 
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HGYGGTPPH  TPTPSTP   PSGG GYYNPPS  GGS PTTPVDPGTPS PSTP     
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 ---------------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNL 180
                          P  PFT  CN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFT--CNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAK 230
           NLLQALSNTR DGFGA+LREGTASYLNSLA+N FPFTTKQV+SSFVSAL+SN+AAADQA 
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

[Close]

BLAST of MC02g0610 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 359 bits (921), Expect = 2.05e-123
Identity = 193/245 (78.78%), Postives = 212/245 (86.53%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MRSKQ SAL+FTLLAGLLS SL+IPV S++IADQKSYYSP DPH+G+PP+G+H++PMPP 
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HG GGT PH  TPTPSTP NPPSGGGGYYNPPSSGG SPP+TPVDPGTPS PSTP     
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSSGG-SPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT 180
                 P  PFT  C YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT
Sbjct: 121 PTTPTIPTIPFT--CTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT 180

Query: 181 RTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGK 233
           R DG+GA+LREGTASYLNSLA+N FP+TTKQVR+SFVSALSSNKAA +QA  FKLANEGK
Sbjct: 181 RNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGK 240

[Close]

BLAST of MC02g0610 vs. ExPASy TrEMBL
Match: A0A6J1I3W1 (protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 2.65e-122
Identity = 193/254 (75.98%), Postives = 208/254 (81.89%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MR+KQAS LLFTLLAGLLS SL+IPV S+TIADQKSYYSP DPHAGTPPTG+H+NP+PP 
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HGYGGTPPH  TPTPSTP   PSG  GYYNPPSSGG +P TTPVDPGTPS PSTP     
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSSGGSTP-TTPVDPGTPSTPSTPSTPST 120

Query: 121 ------------------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFG 180
                             P  PFT  CN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFG
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFT--CNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFG 180

Query: 181 TNLNLLQALSNTRTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAAD 230
           TNLNLLQALSNTR DGFGA+LREGTASYLNSLA+N FPFTTKQV+SSFVSAL+SN+AAAD
Sbjct: 181 TNLNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAAD 240

[Close]

BLAST of MC02g0610 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 351 bits (900), Expect = 2.80e-120
Identity = 192/245 (78.37%), Postives = 209/245 (85.31%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60
           MRSKQASALLFTLLAGLLS SL+IPV S++I DQKSYYSP DPH+G+PP+G+H +P+PP 
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120
           HG GGT PH  TPTPSTP    SGGGGYYNPPSSGG SPP+TPVDPGTPS PSTP     
Sbjct: 61  HGNGGT-PHYSTPTPSTP----SGGGGYYNPPSSGG-SPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ------PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT 180
                 P  PFT  CNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT
Sbjct: 121 PSTPTIPTTPFT--CNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNT 180

Query: 181 RTDGFGAILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGK 233
           R DG+GA+LREGTASYLNSLA+N FP+TTKQVR+SFVSALSSNKAA DQA  FKLANEGK
Sbjct: 181 RNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGK 237

[Close]

BLAST of MC02g0610 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 189.9 bits (481), Expect = 2.3e-48
Identity = 133/302 (44.04%), Postives = 160/302 (52.98%), Query Frame = 0


Query: 7   SALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSPDPHA--GTPPT--------------- 66
           S  ++ L A LLS  L   V S    D K+YY   P    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GTHNNPMPPPH---------------------------------GYGGTPPHQPTPTP 126
              T ++P PP H                                  +  TP H  TP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPLNPPSGGGGYYN-----------PPSS--------GGGSPPTTPVDPGTPSIPSTPP 186
            TP +PPS  GGYY+           PPS          GGSPPT  +DPGTP  P  P 
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA 185

Query: 187 P-APFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALSNTRT 233
           P  P TGTC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQALSNTR+
Sbjct: 186 PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRS 245

The following BLAST results are available for this feature:

BLAST of MC02g0610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	3.3e-47	44.04	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of MC02g0610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149747.1	5.38e-163	100.00	protodermal factor 1-like [Momordica charantia]	[more]
XP_038900371.1	1.46e-133	82.52	protodermal factor 1-like [Benincasa hispida]	[more]
XP_022947015.1	2.88e-123	77.29	protodermal factor 1-like [Cucurbita moschata]	[more]
XP_004143175.1	4.23e-123	78.78	protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_0206...	[more]
KAG6604731.1	2.36e-122	76.89	Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MC02g0610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8U7	2.60e-163	100.00	protodermal factor 1-like OS=Momordica charantia OX=3673 GN=LOC111018104 PE=4 SV...	[more]
A0A6J1G5M6	1.39e-123	77.29	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]
A0A0A0KF76	2.05e-123	78.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]
A0A6J1I3W1	2.65e-122	75.98	protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1	[more]
A0A5A7UHX0	2.80e-120	78.37	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MC02g0610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	2.3e-48	44.04	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..79
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..233
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0610.1	MC02g0610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane