MC02g0556 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0556
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 4513112 .. 4513351 (-)
RNA-Seq Expression	MC02g0556
Synteny	MC02g0556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGATCAATTCTTGCAACCGATCGCGGTAGCTATGGAGATGTCGCCTTGGTCAGCTCTAGCGGGTTATTTTTGCTTTCGGTCATCTTTTTATCGATATCTCTCATATCAATGATCGTATTTGCTTGTGGAGACTCTAGTGACAATCCTAAGAAAAGAAATGGCGGTGGAGGTGGAGCTGGTGGAGGTGGAGGTGGAGGTTGTGGTGGTGGCGGCAGCGGCGGTTGTGGTGGTGGT

mRNA sequence

ATGACCCGATCAATTCTTGCAACCGATCGCGGTAGCTATGGAGATGTCGCCTTGGTCAGCTCTAGCGGGTTATTTTTGCTTTCGGTCATCTTTTTATCGATATCTCTCATATCAATGATCGTATTTGCTTGTGGAGACTCTAGTGACAATCCTAAGAAAAGAAATGGCGGTGGAGGTGGAGCTGGTGGAGGTGGAGGTGGAGGTTGTGGTGGTGGCGGCAGCGGCGGTTGTGGTGGTGGT

Coding sequence (CDS)

ATGACCCGATCAATTCTTGCAACCGATCGCGGTAGCTATGGAGATGTCGCCTTGGTCAGCTCTAGCGGGTTATTTTTGCTTTCGGTCATCTTTTTATCGATATCTCTCATATCAATGATCGTATTTGCTTGTGGAGACTCTAGTGACAATCCTAAGAAAAGAAATGGCGGTGGAGGTGGAGCTGGTGGAGGTGGAGGTGGAGGTTGTGGTGGTGGCGGCAGCGGCGGTTGTGGTGGTGGT

Protein sequence

MTRSILATDRGSYGDVALVSSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNGGGGGAGGGGGGGCGGGGSGGCGGG

Homology

[Close]

BLAST of MC02g0556 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 4.69e-15
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALVSSSGLFLLSVIFLSISLISMIVFACGDSS-DNPKKRNGGGG 60
          M RSI A D G  GDV L SS GL LL+ + LS+SL+SMI+FACGDSS DN +KRNGGG 
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGG- 60

Query: 61 GAGGGGGGGCGG 71
            GGGGGGGCGG
Sbjct: 61 -CGGGGGGGCGG 70

[Close]

BLAST of MC02g0556 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.47e-13
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALVSSSGLFLLSVIFLSISLISMIVFACGDSS-DNPKKRNGGGG 60
          M R I A D G  GDV L SS GL LL+ I +S+SL+SMI+FACGDSS  N +KRNGGGG
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 GAG 62
          GAG
Sbjct: 61 GAG 63

[Close]

BLAST of MC02g0556 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 2.82e-12
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MTRSILATDRGSYG--DVALVSSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNGGG 60
          M R ILA   G  G  DV LVSS GLFLLS I LSISL+SMI+FACG+S+D PK+++GGG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSND-PKRKDGGG 60

Query: 61 G--GAGGGGGGGCGGG 72
          G  G  GGGGGGCGGG
Sbjct: 61 GCGGGDGGGGGGCGGG 75

[Close]

BLAST of MC02g0556 vs. NCBI nr
Match: TQE03432.1 (hypothetical protein C1H46_010997 [Malus baccata])

HSP 1 Score: 56.2 bits (134), Expect = 3.86e-08
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALV----SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNG 60
          M R+ +    G  G+VA++    +S GL LL +I +S+SLISM++FACGDSS +P+ R G
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGSPRPRPG 60

Query: 61 GGGGAGGGGG 66
          GGG  GGGGG
Sbjct: 61 GGGWGGGGGG 70

[Close]

BLAST of MC02g0556 vs. NCBI nr
Match: KAG7960792.1 (hypothetical protein I3843_10G143600 [Carya illinoinensis])

HSP 1 Score: 54.3 bits (129), Expect = 2.26e-07
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1  MTRSILATDRGSYGD----VALVSSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNG 60
          M+R  ++ D G++      VAL SSSGL L+ +I +S+S+ISM++FACGD ++  ++  G
Sbjct: 1  MSRDFVSLDVGAHAHDEMGVALKSSSGLLLVGMIIMSLSIISMVIFACGDDNNRQERGGG 60

Query: 61 GGGGA-------GGGGGGGCGGG 72
          GGGG        GGGGGGGCGGG
Sbjct: 61 GGGGGCGSGGGGGGGGGGGCGGG 83

[Close]

BLAST of MC02g0556 vs. ExPASy TrEMBL
Match: A0A540MXA9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.87e-08
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALV----SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNG 60
          M R+ +    G  G+VA++    +S GL LL +I +S+SLISM++FACGDSS +P+ R G
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGSPRPRPG 60

Query: 61 GGGGAGGGGG 66
          GGG  GGGGG
Sbjct: 61 GGGWGGGGGG 70

[Close]

BLAST of MC02g0556 vs. ExPASy TrEMBL
Match: I1LUN3 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G211400 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.04e-07
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALVSSSG-LFLLSVIFLSISLISMIVFACG--DSSDNPKKRN 55
          M R  LA   G YGD  ++  SG LFLL +IFLS+S+ISMI+FACG  +S +  +KRN
Sbjct: 1  MGREFLAMFHGGYGDEVIMHKSGVLFLLGMIFLSLSVISMIIFACGADNSHEYRRKRN 58

[Close]

BLAST of MC02g0556 vs. ExPASy TrEMBL
Match: A0A445HTB8 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_035059 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.04e-07
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALVSSSG-LFLLSVIFLSISLISMIVFACG--DSSDNPKKRN 55
          M R  LA   G YGD  ++  SG LFLL +IFLS+S+ISMI+FACG  +S +  +KRN
Sbjct: 1  MGREFLAMFHGGYGDEVIMHKSGVLFLLGMIFLSLSVISMIIFACGADNSHEYRRKRN 58

[Close]

BLAST of MC02g0556 vs. ExPASy TrEMBL
Match: A0A540LEY3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029325 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.08e-07
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 1  MTRSILATDRGSYGDVALV----SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNG 60
          M R+ +    G  G+VA++    +S GL LL +I +S+SLISM++FACGDSS  P+   G
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGKPRPGGG 60

Query: 61 G-----GGGAGGGGGGGCGGG 72
          G     GG  GGGGGGGCGGG
Sbjct: 61 GYTGGAGGCGGGGGGGGCGGG 81

[Close]

BLAST of MC02g0556 vs. ExPASy TrEMBL
Match: A0A6J5WYX6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.17e-07
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 20 SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKRNGGGGG---AGGGGGGGCGGGGSGG 77
          +S G+FLL +I +S+SLISM++FACGD   + KKR GGGGG   A  GGGGGCGGGG GG
Sbjct: 23 NSGGIFLLCMILMSLSLISMVIFACGDDEGSSKKRYGGGGGGAAAAAGGGGGCGGGGGGG 82

The following BLAST results are available for this feature:

BLAST of MC02g0556 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g0556 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603228.1	4.69e-15	68.06	hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603229.1	1.47e-13	65.08	hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604774.1	2.82e-12	67.11	hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TQE03432.1	3.86e-08	51.43	hypothetical protein C1H46_010997 [Malus baccata]	[more]
KAG7960792.1	2.26e-07	48.19	hypothetical protein I3843_10G143600 [Carya illinoinensis]	[more]

BLAST of MC02g0556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540MXA9	1.87e-08	51.43	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1	[more]
I1LUN3	2.04e-07	53.45	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G211400 PE=4 SV=1	[more]
A0A445HTB8	2.04e-07	53.45	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_035059 PE=4 SV=1	[more]
A0A540LEY3	4.08e-07	50.62	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029325 PE=4 SV=1	[more]
A0A6J5WYX6	4.17e-07	63.93	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 S...	[more]

BLAST of MC02g0556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..80
None	No IPR available	PANTHER	PTHR35420	OS02G0198500 PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0556.1	MC02g0556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane