MC02g0369 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0369
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-H2 finger protein ATL64
Location	MC02: 3220237 .. 3220395 (+)
RNA-Seq Expression	MC02g0369
Synteny	MC02g0369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACGGTACAGCGGAGGACGAGGTCATGTGCTCCATCTGTTTGACGGAATTCGCGAGACAAGATTCCGTGTACGAACTTCCCGATTGTGCGCACGTCTTCCATATCAATTGCATCGAGAAGTGGATGGAGAGGAACAACTTCACCTGCCCGCTCTGTAGG

mRNA sequence

GACGGTACAGCGGAGGACGAGGTCATGTGCTCCATCTGTTTGACGGAATTCGCGAGACAAGATTCCGTGTACGAACTTCCCGATTGTGCGCACGTCTTCCATATCAATTGCATCGAGAAGTGGATGGAGAGGAACAACTTCACCTGCCCGCTCTGTAGG

Coding sequence (CDS)

GACGGTACAGCGGAGGACGAGGTCATGTGCTCCATCTGTTTGACGGAATTCGCGAGACAAGATTCCGTGTACGAACTTCCCGATTGTGCGCACGTCTTCCATATCAATTGCATCGAGAAGTGGATGGAGAGGAACAACTTCACCTGCCCGCTCTGTAGG

Protein sequence

DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR

Homology

[Close]

BLAST of MC02g0369 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-14
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           D   E+E+ C ICL EF  +D+V  LP CAH+FHINCIE W+ R + TCPLCR
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCR 105

[Close]

BLAST of MC02g0369 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-11
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           +G A++   C++CL EF+ +D +  LP C+H FH+NCI+ W++ N+ TCPLCR
Sbjct: 134 NGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCR 185

[Close]

BLAST of MC02g0369 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-09
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   DGTAEDEVM---CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           +G  E+E     CS+CL+EF  ++ +  +P+C+H+FHI+CI+ W++ NN  CPLCR
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQ-NNANCPLCR 180

[Close]

BLAST of MC02g0369 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-09
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           D T +D + C++CL+EF   ++   LP+C H FH++CI+ W   ++ TCPLCR
Sbjct: 110 DETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHS-TCPLCR 161

[Close]

BLAST of MC02g0369 vs. ExPASy Swiss-Prot
Match: Q9SLC3 (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-09
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           DG A     C++CL+    QD   ELP+C H+FH++C++ W+   + TCP+CR
Sbjct: 99  DGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCS-TCPVCR 150

[Close]

BLAST of MC02g0369 vs. NCBI nr
Match: XP_022140627.1 (RING-H2 finger protein ATL64 [Momordica charantia])

HSP 1 Score: 121 bits (304), Expect = 5.99e-34
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Sbjct: 48  DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 100

[Close]

BLAST of MC02g0369 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 2.01e-24
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           D  AE+E MCSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Sbjct: 68  DDRAEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

[Close]

BLAST of MC02g0369 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 8.13e-24
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           D   E+E MCSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Sbjct: 68  DDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

[Close]

BLAST of MC02g0369 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 8.13e-24
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           D   E+E MCSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Sbjct: 68  DDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

[Close]

BLAST of MC02g0369 vs. NCBI nr
Match: XP_038902378.1 (probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.09e-23
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           D   ++E +CSICL EFAR+DSVYELPDC HV+H NCIEKW+ERN FTCPLCR
Sbjct: 61  DDRPKEEEICSICLMEFAREDSVYELPDCKHVYHFNCIEKWLERNRFTCPLCR 113

[Close]

BLAST of MC02g0369 vs. ExPASy TrEMBL
Match: A0A6J1CHK3 (RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.90e-34
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Sbjct: 48  DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 100

[Close]

BLAST of MC02g0369 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.75e-25
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           D  AE+E MCSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Sbjct: 68  DDRAEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

[Close]

BLAST of MC02g0369 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.55e-20
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           D  AE+E+ CSICL EFAR DSV  LPDC+HVFH +CIEKW+ERN FTCPLCR
Sbjct: 147 DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 198

[Close]

BLAST of MC02g0369 vs. ExPASy TrEMBL
Match: A0A6J1I5X8 (RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.39e-19
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 4   AEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
           AE+E+ CSICL EFAR DSV  L DC+HVFH +CIEKW+ERN FTCPLCR
Sbjct: 61  AEEEI-CSICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCR 109

[Close]

BLAST of MC02g0369 vs. ExPASy TrEMBL
Match: A0A7J9GN90 (RING-type domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_009563 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.52e-18
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 4  AEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 53
          A +E +CSICL EF   D+V ++  C HVFH+NCIEKWMER +FTCPLCR
Sbjct: 41 AAEEEVCSICLVEFGNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCPLCR 90

[Close]

BLAST of MC02g0369 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-15
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           D   E+E+ C ICL EF  +D+V  LP CAH+FHINCIE W+ R + TCPLCR
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCR 105

[Close]

BLAST of MC02g0369 vs. TAIR 10
Match: AT5G40250.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-12
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           +G A++   C++CL EF+ +D +  LP C+H FH+NCI+ W++ N+ TCPLCR
Sbjct: 134 NGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCR 185

[Close]

BLAST of MC02g0369 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-10
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           D T +D + C++CL+EF   ++   LP+C H FH++CI+ W   ++ TCPLCR
Sbjct: 110 DETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHS-TCPLCR 161

[Close]

BLAST of MC02g0369 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-10
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   DGTAEDEVM---CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           +G  E+E     CS+CL+EF  ++ +  +P+C+H+FHI+CI+ W++ NN  CPLCR
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQ-NNANCPLCR 180

[Close]

BLAST of MC02g0369 vs. TAIR 10
Match: AT2G42360.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-10
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR 54
           DG A     C++CL+    QD   ELP+C H+FH++C++ W+   + TCP+CR
Sbjct: 99  DGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCS-TCPVCR 150

The following BLAST results are available for this feature:

BLAST of MC02g0369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	2.4e-14	58.49	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9FL07	4.3e-11	47.17	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q9LSW9	1.8e-09	44.64	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8L9T5	1.8e-09	43.40	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9SLC3	2.3e-09	41.51	E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 ...	[more]

BLAST of MC02g0369 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140627.1	5.99e-34	100.00	RING-H2 finger protein ATL64 [Momordica charantia]	[more]
XP_022944066.1	2.01e-24	79.25	RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin...	[more]
KAG7010790.1	8.13e-24	77.36	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023512248.1	8.13e-24	77.36	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]
XP_038902378.1	1.09e-23	73.58	probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida]	[more]

BLAST of MC02g0369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHK3	2.90e-34	100.00	RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4...	[more]
A0A6J1FTE6	9.75e-25	79.25	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A6J1G855	2.55e-20	73.58	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I5X8	4.39e-19	74.00	RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV...	[more]
A0A7J9GN90	4.52e-18	64.00	RING-type domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_00...	[more]

BLAST of MC02g0369 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	1.7e-15	58.49	RING/U-box superfamily protein	[more]
AT5G40250.1	3.0e-12	47.17	RING/U-box superfamily protein	[more]
AT3G16720.1	1.3e-10	43.40	TOXICOS EN LEVADURA 2	[more]
AT5G43420.1	1.3e-10	44.64	RING/U-box superfamily protein	[more]
AT2G42360.1	1.7e-10	41.51	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 10..52 e-value: 1.9E-6 score: 37.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 9..53 e-value: 1.3E-14 score: 54.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 10..53 score: 13.108904
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 3..53 e-value: 2.0E-18 score: 67.7
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 5..53
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 5..53
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 4..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0369.1	MC02g0369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane