MC02g0253 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0253
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	MC02: 2357725 .. 2358154 (+)
RNA-Seq Expression	MC02g0253
Synteny	MC02g0253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA

mRNA sequence

CTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA

Coding sequence (CDS)

CTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA

Protein sequence

LSSLSVSVGPAECFRRWCSFRSLRISPLHRKFPLPLPYSSLVVSTACPGLSDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQSFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVP

Homology

[Close]

BLAST of MC02g0253 vs. NCBI nr
Match: GFP97095.1 (hypothetical protein PHJA_001853600 [Phtheirospermum japonicum] >GFQ07944.1 hypothetical protein PHJA_002938400 [Phtheirospermum japonicum])

HSP 1 Score: 122 bits (306), Expect = 5.19e-32
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ------SFYLHAALLRQAFAHCGKFPT 111
           DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ      +FYLHAALLRQAFAHCGKFPT
Sbjct: 68  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQKVHDPWAFYLHAALLRQAFAHCGKFPT 127

Query: 112 AASRRSLGRVSVP 118
           AASRRSLGRVSVP
Sbjct: 128 AASRRSLGRVSVP 140

[Close]

BLAST of MC02g0253 vs. NCBI nr
Match: EPS74505.1 (hypothetical protein M569_00222, partial [Genlisea aurea])

HSP 1 Score: 118 bits (296), Expect = 3.88e-30
Identity = 66/83 (79.52%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS----------------FYLHAALLRQ 111
           DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ+                FYLHAALLRQ
Sbjct: 94  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQNTVIASSPGKEVHDPWAFYLHAALLRQ 153

Query: 112 AFAHCGKFPTAASRRSLGRVSVP 118
           AFAHCGKFPTAASRRSLGRVSVP
Sbjct: 154 AFAHCGKFPTAASRRSLGRVSVP 176

[Close]

BLAST of MC02g0253 vs. NCBI nr
Match: AAV44205.1 (unknow protein [Oryza sativa Japonica Group])

HSP 1 Score: 116 bits (291), Expect = 2.84e-29
Identity = 65/83 (78.31%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS----------------FYLHAALLRQ 111
           DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ+                F+LHAALLRQ
Sbjct: 96  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQNTVIVSSPRKEVDDPWAFHLHAALLRQ 155

Query: 112 AFAHCGKFPTAASRRSLGRVSVP 118
           AFAHCGKFPTAASRRSLGRVSVP
Sbjct: 156 AFAHCGKFPTAASRRSLGRVSVP 178

[Close]

BLAST of MC02g0253 vs. NCBI nr
Match: GFQ00420.1 (hypothetical protein PHJA_002186000, partial [Phtheirospermum japonicum])

HSP 1 Score: 111 bits (277), Expect = 8.79e-28
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ------SFYLHAALLRQAFAHCGKFPT 111
           DLTADLKSHLQTLY QS RITL SSVLPRLLAQ      +FYLH ALL QAF+HCGKFPT
Sbjct: 50  DLTADLKSHLQTLYTQSLRITLVSSVLPRLLAQKVHDPWAFYLHTALLCQAFSHCGKFPT 109

Query: 112 AASRRSLGRVSVP 118
           AASRRSLGRVSVP
Sbjct: 110 AASRRSLGRVSVP 122

[Close]

BLAST of MC02g0253 vs. NCBI nr
Match: KAG6621723.1 (hypothetical protein I3842_Q013700, partial [Carya illinoinensis])

HSP 1 Score: 108 bits (269), Expect = 4.00e-27
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQSFYLHAALLRQAFAHCGKFPTAASRRS 111
           DLTADLKSHLQTLYAQSFRITLASS        +FYLHAALLRQAFAHCGKFPTAASRRS
Sbjct: 32  DLTADLKSHLQTLYAQSFRITLASS--------AFYLHAALLRQAFAHCGKFPTAASRRS 90

Query: 112 LGRVSVP 118
           LGRVSVP
Sbjct: 92  LGRVSVP 90

[Close]

BLAST of MC02g0253 vs. ExPASy TrEMBL
Match: S8D511 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00222 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.88e-30
Identity = 66/83 (79.52%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS----------------FYLHAALLRQ 111
           DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ+                FYLHAALLRQ
Sbjct: 94  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQNTVIASSPGKEVHDPWAFYLHAALLRQ 153

Query: 112 AFAHCGKFPTAASRRSLGRVSVP 118
           AFAHCGKFPTAASRRSLGRVSVP
Sbjct: 154 AFAHCGKFPTAASRRSLGRVSVP 176

[Close]

BLAST of MC02g0253 vs. ExPASy TrEMBL
Match: Q5W7C9 (Unknow protein OS=Oryza sativa subsp. japonica OX=39947 GN=P0496H07.14 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.38e-29
Identity = 65/83 (78.31%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS----------------FYLHAALLRQ 111
           DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ+                F+LHAALLRQ
Sbjct: 96  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQNTVIVSSPRKEVDDPWAFHLHAALLRQ 155

Query: 112 AFAHCGKFPTAASRRSLGRVSVP 118
           AFAHCGKFPTAASRRSLGRVSVP
Sbjct: 156 AFAHCGKFPTAASRRSLGRVSVP 178

[Close]

BLAST of MC02g0253 vs. ExPASy TrEMBL
Match: M1DBW2 (30S ribosomal protein S12, chloroplastic OS=Solanum tuberosum OX=4113 PE=3 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.42e-29
Identity = 66/83 (79.52%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS----------------FYLHAALLRQ 111
           DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQ+                FYLHAALLRQ
Sbjct: 165 DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQNTVIASSPGKEVHDPWAFYLHAALLRQ 224

Query: 112 AFAHCGKFPTAASRRSLGRVSVP 118
           AFAHCGKFPTAASRRSLGRVSVP
Sbjct: 225 AFAHCGKFPTAASRRSLGRVSVP 247

[Close]

BLAST of MC02g0253 vs. ExPASy TrEMBL
Match: A0A5D2YND6 (Uncharacterized protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_A07G184900v1 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 5.01e-27
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQSFYLHAALLRQAFAHCGKFPTAASRRS 111
           DLTADLKSHLQTLYAQSFRITLASS        +FYLHAALLRQAFAHCGKFPTAASRRS
Sbjct: 68  DLTADLKSHLQTLYAQSFRITLASS--------AFYLHAALLRQAFAHCGKFPTAASRRS 126

Query: 112 LGRVSVP 118
           LGRVSVP
Sbjct: 128 LGRVSVP 126

[Close]

BLAST of MC02g0253 vs. ExPASy TrEMBL
Match: A0A2K1Y5K5 (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_013G140100 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 5.41e-27
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 52  DLTADLKSHLQTLYAQSFRITLASSVLPRLLAQSFYLHAALLRQAFAHCGKFPTAASRRS 111
           DLTADLKSHLQTLYAQSFRITLASS        +FYLHAALLRQAFAHCGKFPTAASRRS
Sbjct: 68  DLTADLKSHLQTLYAQSFRITLASS--------AFYLHAALLRQAFAHCGKFPTAASRRS 126

Query: 112 LGRVSVP 118
           LGRVSVP
Sbjct: 128 LGRVSVP 126

The following BLAST results are available for this feature:

BLAST of MC02g0253 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g0253 vs. NCBI nr


Match Name	E-value	Identity	Description
GFP97095.1	5.19e-32	90.41	hypothetical protein PHJA_001853600 [Phtheirospermum japonicum] >GFQ07944.1 hypo...	[more]
EPS74505.1	3.88e-30	79.52	hypothetical protein M569_00222, partial [Genlisea aurea]	[more]
AAV44205.1	2.84e-29	78.31	unknow protein [Oryza sativa Japonica Group]	[more]
GFQ00420.1	8.79e-28	82.19	hypothetical protein PHJA_002186000, partial [Phtheirospermum japonicum]	[more]
KAG6621723.1	4.00e-27	86.57	hypothetical protein I3842_Q013700, partial [Carya illinoinensis]	[more]

BLAST of MC02g0253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
S8D511	1.88e-30	79.52	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00222 PE=...	[more]
Q5W7C9	1.38e-29	78.31	Unknow protein OS=Oryza sativa subsp. japonica OX=39947 GN=P0496H07.14 PE=4 SV=1	[more]
M1DBW2	1.42e-29	79.52	30S ribosomal protein S12, chloroplastic OS=Solanum tuberosum OX=4113 PE=3 SV=1	[more]
A0A5D2YND6	5.01e-27	86.57	Uncharacterized protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_A07...	[more]
A0A2K1Y5K5	5.41e-27	86.57	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_013G1...	[more]

BLAST of MC02g0253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38146:SF9	SUBFAMILY NOT NAMED	coord: 84..118
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 84..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0253.1	MC02g0253.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane