MC02g0252 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0252
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 2357265 .. 2357497 (-)
RNA-Seq Expression	MC02g0252
Synteny	MC02g0252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAATCCCGCAACGAGCGCAACCCTCGTGTTTAGTCAACAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACAC

mRNA sequence

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACAC

Coding sequence (CDS)

ATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACAC

Protein sequence

MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH

Homology

[Close]

BLAST of MC02g0252 vs. NCBI nr
Match: KAG9455496.1 (hypothetical protein H6P81_000004 [Aristolochia fimbriata] >KAG9455511.1 hypothetical protein H6P81_000019 [Aristolochia fimbriata] >VDD65584.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 111 bits (277), Expect = 1.98e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. NCBI nr
Match: KAG5568285.1 (hypothetical protein H5410_064706 [Solanum commersonii] >PHT42293.1 hypothetical protein CQW23_16318 [Capsicum baccatum] >PLY88739.1 hypothetical protein LSAT_4X99801 [Lactuca sativa] >PPR83211.1 hypothetical protein GOBAR_AA37501 [Gossypium barbadense] >TMW90651.1 hypothetical protein EJD97_015426 [Solanum chilense] >CAA7038882.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 111 bits (277), Expect = 3.05e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. NCBI nr
Match: EPS74511.1 (hypothetical protein M569_00228 [Genlisea aurea])

HSP 1 Score: 111 bits (277), Expect = 6.86e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. NCBI nr
Match: KAG9438447.1 (hypothetical protein H6P81_021617 [Aristolochia fimbriata])

HSP 1 Score: 111 bits (277), Expect = 6.86e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. NCBI nr
Match: XP_034694073.1 (uncharacterized protein LOC117920568 [Vitis riparia])

HSP 1 Score: 111 bits (277), Expect = 9.14e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. ExPASy TrEMBL
Match: A0A3P6H607 (Uncharacterized protein ycf68 OS=Brassica oleracea OX=3712 GN=BOLSC44T60812H PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 9.57e-31
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. ExPASy TrEMBL
Match: A0A2J6LN37 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_4X63021 PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.47e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. ExPASy TrEMBL
Match: A0A6D2L9K1 (Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS26117 PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.47e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. ExPASy TrEMBL
Match: A0A0D2ZV59 (Uncharacterized protein ycf68 OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.47e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

[Close]

BLAST of MC02g0252 vs. ExPASy TrEMBL
Match: A0A2G2WAM0 (Uncharacterized protein ycf68 OS=Capsicum baccatum OX=33114 GN=CQW23_16318 PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.47e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51
          MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRH 51

The following BLAST results are available for this feature:

BLAST of MC02g0252 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g0252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG9455496.1	1.98e-30	100.00	hypothetical protein H6P81_000004 [Aristolochia fimbriata] >KAG9455511.1 hypothe...	[more]
KAG5568285.1	3.05e-30	100.00	hypothetical protein H5410_064706 [Solanum commersonii] >PHT42293.1 hypothetical...	[more]
EPS74511.1	6.86e-30	100.00	hypothetical protein M569_00228 [Genlisea aurea]	[more]
KAG9438447.1	6.86e-30	100.00	hypothetical protein H6P81_021617 [Aristolochia fimbriata]	[more]
XP_034694073.1	9.14e-30	100.00	uncharacterized protein LOC117920568 [Vitis riparia]	[more]

BLAST of MC02g0252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6H607	9.57e-31	100.00	Uncharacterized protein ycf68 OS=Brassica oleracea OX=3712 GN=BOLSC44T60812H PE=...	[more]
A0A2J6LN37	1.47e-30	100.00	Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_4X63021 PE=3 SV=...	[more]
A0A6D2L9K1	1.47e-30	100.00	Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS...	[more]
A0A0D2ZV59	1.47e-30	100.00	Uncharacterized protein ycf68 OS=Brassica oleracea var. oleracea OX=109376 PE=3 ...	[more]
A0A2G2WAM0	1.47e-30	100.00	Uncharacterized protein ycf68 OS=Capsicum baccatum OX=33114 GN=CQW23_16318 PE=3 ...	[more]

BLAST of MC02g0252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..45
None	No IPR available	PANTHER	PTHR34890:SF13	YCF68 PROTEIN	coord: 1..51
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0252.1	MC02g0252.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane