MC02g0188 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0188
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA polymerase epsilon subunit 3
Location	MC02: 1805475 .. 1805989 (+)
RNA-Seq Expression	MC02g0188
Synteny	MC02g0188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAACAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACGTAAGCTCGGCAACCTGCCCTAATGCTTTCAATTCTGAATGAAATTCTATTGATTCTGATGGTAGAAACTAGGGTTCCTTGTTTCTCTGCTGTTTACCTAAAATACGAACGCGAAACCGATTAGAGCCATGTATTTCTGGTTGTTATGGCGCTAGGGTTAACGAAATTGAAGTTTTGTACTGGTTAGTTCTTGTATTCGTACTAACTCGTAGATCTCTAAGCAGGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGGATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT

mRNA sequence

ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAACAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGGATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT

Coding sequence (CDS)

ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAACAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGGATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT

Protein sequence

MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

Homology

[Close]

BLAST of MC02g0188 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-09
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 12 LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
          LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10 LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72 KADDVLKALEDMEFPELVRPLKASL 97
           A DVL A+E+MEF   V PLK +L
Sbjct: 70 NASDVLSAMEEMEFQRFVTPLKEAL 89

[Close]

BLAST of MC02g0188 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-09
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 12 LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
          LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10 LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72 KADDVLKALEDMEFPELVRPLKASL 97
           A DVL A+E+MEF   V PLK +L
Sbjct: 70 NASDVLSAMEEMEFQRFVTPLKEAL 89

[Close]

BLAST of MC02g0188 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-09
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 12 LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
          LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10 LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72 KADDVLKALEDMEFPELVRPLKASL 97
           A DVL A+E+MEF   V PLK +L
Sbjct: 70 NASDVLSAMEEMEFQRFVTPLKEAL 89

[Close]

BLAST of MC02g0188 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-09
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 12 LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
          LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10 LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72 KADDVLKALEDMEFPELVRPLKASL 97
           A DVL A+E+MEF   V PLK +L
Sbjct: 70 NASDVLSAMEEMEFQRFVTPLKEAL 89

[Close]

BLAST of MC02g0188 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.5e-09
Identity = 28/85 (32.94%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 12 LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
          LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10 LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72 KADDVLKALEDMEFPELVRPLKASL 97
           A DVL A+E+MEF   + PLK +L
Sbjct: 70 NASDVLSAMEEMEFQRFITPLKEAL 89

[Close]

BLAST of MC02g0188 vs. NCBI nr
Match: XP_022152961.1 (DNA polymerase epsilon subunit 3 [Momordica charantia])

HSP 1 Score: 186 bits (471), Expect = 4.35e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. NCBI nr
Match: KAG7035929.1 (DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182 bits (463), Expect = 7.42e-57
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. NCBI nr
Match: XP_023533668.1 (DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo] >XP_023533669.1 DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182 bits (463), Expect = 7.42e-57
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. NCBI nr
Match: XP_022958709.1 (DNA polymerase epsilon subunit 3 [Cucurbita moschata] >XP_022958710.1 DNA polymerase epsilon subunit 3 [Cucurbita moschata])

HSP 1 Score: 182 bits (463), Expect = 7.42e-57
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. NCBI nr
Match: KAG6605978.1 (DNA polymerase epsilon subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (463), Expect = 9.57e-57
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. ExPASy TrEMBL
Match: A0A6J1DJA4 (DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.11e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. ExPASy TrEMBL
Match: A0A6J1H495 (DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 3.59e-57
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1  MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. ExPASy TrEMBL
Match: A0A6J1K184 (DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 6.37e-57
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESAR+FIHYLSATSN
Sbjct: 1  MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. ExPASy TrEMBL
Match: A0A1S3BNA4 (DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 7.14e-55
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
          MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1  MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61 DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
          DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61 DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 97

[Close]

BLAST of MC02g0188 vs. ExPASy TrEMBL
Match: A0A5A7V2B9 (DNA polymerase epsilon subunit D isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00130 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 2.65e-53
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATFL 60

Query: 61  --SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN 97
             +NDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Sbjct: 61  SRANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLN 101

[Close]

BLAST of MC02g0188 vs. TAIR 10
Match: AT2G27470.1 (nuclear factor Y, subunit B11 )

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-29
Identity = 59/88 (67.05%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 9  IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKR 68
          ++ELP  IVRRVVK+KLS+CS + D+S++K++LLAF ESARIFIHYLSAT+ND CK+++R
Sbjct: 8  VDELPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARR 67

Query: 69 QTIKADDVLKALEDMEFPELVRPLKASL 97
          QT+KADDV KALE+M+F E + PLK+SL
Sbjct: 68 QTMKADDVFKALEEMDFSEFLEPLKSSL 95

[Close]

BLAST of MC02g0188 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 8  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
          E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12 EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68 RQTIKADDVLKALEDMEFPELVRPLKAS 96
          ++TI  + VLKAL+ + F E +  + A+
Sbjct: 72 KRTIAPEHVLKALQVLGFGEYIEEVYAA 94

[Close]

BLAST of MC02g0188 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 8  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
          E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12 EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68 RQTIKADDVLKALEDMEFPELVRPLKAS 96
          ++TI  + VLKAL+ + F E +  + A+
Sbjct: 72 KRTIAPEHVLKALQVLGFGEYIEEVYAA 94

[Close]

BLAST of MC02g0188 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 8  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
          E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12 EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68 RQTIKADDVLKALEDMEFPELVRPLKAS 96
          ++TI  + VLKAL+ + F E +  + A+
Sbjct: 72 KRTIAPEHVLKALQVLGFGEYIEEVYAA 94

[Close]

BLAST of MC02g0188 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 8  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
          E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SN++C +  
Sbjct: 12 EDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLISSESNEVCNKED 71

Query: 68 RQTIKADDVLKALEDMEFPELVRPLKAS 96
          ++TI  + VLKAL+ + F E V  + A+
Sbjct: 72 KRTIAPEHVLKALQVLGFGEYVEEVYAA 94

The following BLAST results are available for this feature:

BLAST of MC02g0188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZN5	7.3e-09	34.12	DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1	[more]
Q9NRF9	7.3e-09	34.12	DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1	[more]
Q5R4W3	7.3e-09	34.12	DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1	[more]
Q642A5	7.3e-09	34.12	DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=...	[more]
Q9JKP7	9.5e-09	32.94	DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1	[more]

BLAST of MC02g0188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152961.1	4.35e-58	100.00	DNA polymerase epsilon subunit 3 [Momordica charantia]	[more]
KAG7035929.1	7.42e-57	97.94	DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533668.1	7.42e-57	97.94	DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo] >XP_023533669.1 DN...	[more]
XP_022958709.1	7.42e-57	97.94	DNA polymerase epsilon subunit 3 [Cucurbita moschata] >XP_022958710.1 DNA polyme...	[more]
KAG6605978.1	9.57e-57	97.94	DNA polymerase epsilon subunit 3, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of MC02g0188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJA4	2.11e-58	100.00	DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 ...	[more]
A0A6J1H495	3.59e-57	97.94	DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 P...	[more]
A0A6J1K184	6.37e-57	96.91	DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=...	[more]
A0A1S3BNA4	7.14e-55	93.81	DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV...	[more]
A0A5A7V2B9	2.65e-53	90.10	DNA polymerase epsilon subunit D isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of MC02g0188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27470.1	2.9e-29	67.05	nuclear factor Y, subunit B11	[more]
AT5G23090.2	1.0e-05	31.82	nuclear factor Y, subunit B13	[more]
AT5G23090.1	1.0e-05	31.82	nuclear factor Y, subunit B13	[more]
AT5G23090.4	1.0e-05	31.82	nuclear factor Y, subunit B13	[more]
AT5G08190.1	1.7e-05	31.82	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..80 e-value: 3.1E-9 score: 37.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..97 e-value: 9.5E-28 score: 98.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..96
None	No IPR available	PANTHER	PTHR46172	DNA POLYMERASE EPSILON SUBUNIT 3	coord: 2..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0188.1	MC02g0188.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0042766	nucleosome mobilization
cellular_component	GO:0008623	CHRAC
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046982	protein heterodimerization activity