MC01g_new0372 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0372
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 16152584 .. 16152886 (+)
RNA-Seq Expression	MC01g_new0372
Synteny	MC01g_new0372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTCCGGCACTCCTTCCTCCTCGTGAACTTTACAATCTTCGTCAATGTGGCCAGAAATTGTCGCCGATTTCAGAAACTGCGAAGCAGGAAAGTAGCTCCGGCGCCACCGGCCTCCGCCGGGAGAAGAGGCGCCGTGATGATGTAGAAGAGAGTGAAACCGCCGTCGATTTGCAGGAGCTCCGATTGCCATTGAAAAAGCGAAAAGCTCTTCGTTGCCAGACCAAGACTGATTCCTCCAAATTTATTCTGGTCGTTTATAGGGATTCTGTCAGAACAAAAATACGACTGCCTGATTGA

mRNA sequence

ATGAGTTCTCCGGCACTCCTTCCTCCTCGTGAACTTTACAATCTTCGTCAATGTGGCCAGAAATTGTCGCCGATTTCAGAAACTGCGAAGCAGGAAAGTAGCTCCGGCGCCACCGGCCTCCGCCGGGAGAAGAGGCGCCGTGATGATGTAGAAGAGAGTGAAACCGCCGTCGATTTGCAGGAGCTCCGATTGCCATTGAAAAAGCGAAAAGCTCTTCGTTGCCAGACCAAGACTGATTCCTCCAAATTTATTCTGGTCGTTTATAGGGATTCTGTCAGAACAAAAATACGACTGCCTGATTGA

Coding sequence (CDS)

ATGAGTTCTCCGGCACTCCTTCCTCCTCGTGAACTTTACAATCTTCGTCAATGTGGCCAGAAATTGTCGCCGATTTCAGAAACTGCGAAGCAGGAAAGTAGCTCCGGCGCCACCGGCCTCCGCCGGGAGAAGAGGCGCCGTGATGATGTAGAAGAGAGTGAAACCGCCGTCGATTTGCAGGAGCTCCGATTGCCATTGAAAAAGCGAAAAGCTCTTCGTTGCCAGACCAAGACTGATTCCTCCAAATTTATTCTGGTCGTTTATAGGGATTCTGTCAGAACAAAAATACGACTGCCTGATTGA

Protein sequence

MSSPALLPPRELYNLRQCGQKLSPISETAKQESSSGATGLRREKRRRDDVEESETAVDLQELRLPLKKRKALRCQTKTDSSKFILVVYRDSVRTKIRLPD

Homology

[Close]

BLAST of MC01g_new0372 vs. NCBI nr
Match: KAG6594856.1 (hypothetical protein SDJN03_11409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 5.94e-10
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 7   LPPRELYNLRQCGQKLSPISETAKQESSS--GATGLRREKRRRDDVEESETAVDLQELRL 66
           LPP ELYN RQC +KLS          SS  G T   REKR RDDV+ +ET  DL EL+L
Sbjct: 29  LPPHELYNARQCKKKLSLKIRLPLMHKSSFDGTTDRPREKRPRDDVKATETVTDL-ELQL 88

Query: 67  PLKKRKALR---CQTKTDSS 81
           PLKKRKA+R   C+ +T ++
Sbjct: 89  PLKKRKAIRMYCCEMQTPAA 107

[Close]

BLAST of MC01g_new0372 vs. NCBI nr
Match: KAG6594857.1 (hypothetical protein SDJN03_11410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 2.31e-09
Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 7   LPPRELYNLRQCGQKLSPISETAKQESSS--GATGLRREKRRRDDVEESETAVDLQELRL 66
           LPP ELYN RQC +KLS          SS  G T   REKR RDDV+ +ET  DL EL+L
Sbjct: 29  LPPHELYNARQCKKKLSLKIRLPLMHKSSLDGTTDRPREKRPRDDVQATETITDL-ELQL 88

Query: 67  PLKKRKALR---CQTKT 78
           PLKKRKAL+   C+ +T
Sbjct: 89  PLKKRKALQMYCCEMQT 104

[Close]

BLAST of MC01g_new0372 vs. NCBI nr
Match: KAG6594858.1 (hypothetical protein SDJN03_11411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.18e-08
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 7   LPPRELYNLRQCGQKLSPISETAKQESSS--GATGLRREKRRRDDVEESETAVDLQELRL 66
           LPP ELYN  QC +KLS          SS  G T   REKR RDDV+ +ET  DL EL+L
Sbjct: 28  LPPYELYNAGQCKKKLSLKIRLPLMHKSSLDGTTDRPREKRPRDDVQATETITDL-ELQL 87

Query: 67  PLKKRKAL---RCQTKT 78
           PLKKRKAL   RC+ +T
Sbjct: 88  PLKKRKALQMYRCEMQT 103

The following BLAST results are available for this feature:

BLAST of MC01g_new0372 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0372 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594856.1	5.94e-10	52.50	hypothetical protein SDJN03_11409, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594857.1	2.31e-09	54.55	hypothetical protein SDJN03_11410, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594858.1	1.18e-08	54.55	hypothetical protein SDJN03_11411, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC01g_new0372 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC01g_new0372 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0372.1	MC01g_new0372.1	mRNA