MC01g_new0340 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0340
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 13827313 .. 13828808 (+)
RNA-Seq ExpressionMC01g_new0340
SyntenyMC01g_new0340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCTGGAGAAAAAAGTCTTTCTCTTCCGGATGACGCGGTCAGAAGATTCGGAGGGTGAGCAGCCACCCTTGTTGTGACCTGACCACTTTCATGCTTCGAATGAGAAGTTGCGCTTTCGATCTTGTTCTCAGCTCCGGGTCTGGTCCTTTAGGCGATCGAAGAAGGGGCCAGGCTCCCGGTGGAGCAGGATAGAGTGTCCGACCATTGTTATTCTTTACTTTCTTAAGGGGCAGAGGAGTCCCACAGCAAGCCCTGGTTCAGGGTAATAGAGTGTCTGATTCATAGGGATACGCAAAAGTATTCTTAGTACCAAAATGGGGAATAGTAACAAAAGGGCGCATCATTTTTGTTACATTACTAAAAATTTGATATGTTGTTTTTTTCCAAAAAAAAAGAGGACCTTTCATTATTATTCATTGTTAATAATGAGAAGAAACGAAAGTTTTTTTTAATGATTTTTGATCCTTCTTTACCCCATAATGATATTGAATAGAGGGAGTTATTTGTTTTTCCGCTGTAATTTGGAAAATCAAGCAAGGTTTAAATGTCCCTCAAAAGTAAGTAAGTAGATGCGAAACATATAAAATGCTGTTAATCCTGCTGTGGGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTAATCTTTGGACCAAAAGCAGGCAAGGGGGGGAATACCACAAAGAGAAAGGGTACCTAATAAAAAAGCATTTTTTGTAATTGGCACATGCTTTGTTAAACCACCCATAAGAACCATATTCTTACTTTTATCCGGAGAATATCCAACAACCGATTCCATTGAGTGAATAATGGACCCAGATCCTAAAAACAACAACGCTTTTGAATAAGCATGAGTAAGAAAATTAAATAAAGCAGCCCGATAAGACCCTATACCCAAGGCTAACATCATATAACCAANGCAACATTCTATTGACTTGATATGATATATTTCAAGATTATTAATACATCCTCAAAAGAGGAAAAGCTCCCTAACCTTAATAATAAAAGAAGGGCTAAAGTAAGACCCTTAAGAGAAATTAGATTTCTCTTGTTATTTTTTATAAAATTCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGATGGGTTTTCTGCCCCTGCAGGGATGGAGCGGGCTCACCATTATTTCATTTCATTCTATTTATGGGTTCGAGCTCTCGAGTTTTGATGAGTCTCAGAAAAAAAACCGATTAAAGATGCGGGTACATTAGAGATTCGAAGGTCTCCGTTTTCCATTTTATAGCGTTTATGTTGTAGGTCAACTCGAGATAGCAAGAATATGACCATTCGTTGCAGTCGTAGGCGAAGGAGACAAGGGCGAGGCACCGAACATGTTCTATCCTCAACCTCCATCCGTCATGTGGAATCTCAATCCGCTTTTCCTATTCACTAG

mRNA sequence

ATGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCTGGAGAAAAAAGTCTTTCTCTTCCGGATGACGCGGTCAGAAGATTCGGAGGGCGATCGAAGAAGGGGCCAGGCTCCCGGTGGAGCAGGATAGAGTGTCCGACCATTGTTATTCTTTACTTTCTTAAGGGGCAGAGGAGTCCCACAGCAAGCCCTGGTTCAGGGTCAACTCGAGATAGCAAGAATATGACCATTCGTTGCAGTCGTAGGCGAAGGAGACAAGGGCGAGGCACCGAACATGTTCTATCCTCAACCTCCATCCGTCATGTGGAATCTCAATCCGCTTTTCCTATTCACTAG

Coding sequence (CDS)

ATGTCCCCTTCCCAACAATTGTACCTTGTCTTGGGGCGTCTTTGGCTTTACGAGAGAAAGCCCGCTGGAGAAAAAAGTCTTTCTCTTCCGGATGACGCGGTCAGAAGATTCGGAGGGCGATCGAAGAAGGGGCCAGGCTCCCGGTGGAGCAGGATAGAGTGTCCGACCATTGTTATTCTTTACTTTCTTAAGGGGCAGAGGAGTCCCACAGCAAGCCCTGGTTCAGGGTCAACTCGAGATAGCAAGAATATGACCATTCGTTGCAGTCGTAGGCGAAGGAGACAAGGGCGAGGCACCGAACATGTTCTATCCTCAACCTCCATCCGTCATGTGGAATCTCAATCCGCTTTTCCTATTCACTAG

Protein sequence

MSPSQQLYLVLGRLWLYERKPAGEKSLSLPDDAVRRFGGRSKKGPGSRWSRIECPTIVILYFLKGQRSPTASPGSGSTRDSKNMTIRCSRRRRRQGRGTEHVLSSTSIRHVESQSAFPIH
Homology
[Close]
BLAST of MC01g_new0340 vs. NCBI nr
Match: KAF9604346.1 (hypothetical protein IFM89_006353 [Coptis chinensis])

HSP 1 Score: 64.7 bits (156), Expect = 2.97e-10
Identity = 48/110 (43.64%), Postives = 54/110 (49.09%), Query Frame = 0 

Query: 1   MSPSQQLYLVLGRLWLYERKPAGEKSLSLPDDA----------------VRRFGGRSKKG 60
           MSPSQQLYLVLGRLWLYERK A EKSLSLP                    RR G    +G
Sbjct: 1   MSPSQQLYLVLGRLWLYERKLAREKSLSLPVRGHTPVCPQKRKSQCILLSRRIGVGVYRG 60

Query: 61  PGSRWSRIECPTIVI----LYFLKGQRSPTASPGSGS----TRDSKNMTI 86
              R SR+      +     Y LK  R  T + GS S    + DS N+TI
Sbjct: 61  KARRQSRVLDEVSHVPPSTRYLLKNFRKRTVALGSVSNDVPSTDSYNITI 110

[Close]
BLAST of MC01g_new0340 vs. NCBI nr
Match: KAF3974216.1 (hypothetical protein CMV_002445 [Castanea mollissima])

HSP 1 Score: 58.9 bits (141), Expect = 2.69e-07
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MSPSQQLYLVLGRLWLYERKPAGEKSLSLP 30
          MSPSQQ YLVLGRLWLYERKP GEKS+ LP
Sbjct: 1  MSPSQQFYLVLGRLWLYERKPTGEKSIYLP 30

[Close]
BLAST of MC01g_new0340 vs. NCBI nr
Match: GEW92190.1 (photosystem I PsaA/PsaB [Tanacetum cinerariifolium])

HSP 1 Score: 57.4 bits (137), Expect = 1.09e-06
Identity = 31/44 (70.45%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 1  MSPSQQLYLVLGRLWLYERKPAGEKSLSLPDDAVRRFGGRSKKG 44
          MSPSQQL LVLGRLWLYERK A EKSLSLP    RR   R + G
Sbjct: 1  MSPSQQLELVLGRLWLYERKLAVEKSLSLPVPGHRRPPERKETG 44

[Close]
BLAST of MC01g_new0340 vs. NCBI nr
Match: PPR96875.1 (hypothetical protein GOBAR_AA23790 [Gossypium barbadense])

HSP 1 Score: 57.0 bits (136), Expect = 1.56e-06
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 1   MSPSQQLYLVLGRLWLYERKPAGEKSL--SLPDDAVRRFGGRSKKGPGSRWSRIECPTIV 58
           MSPSQQLYLVLGRLWLYERKPAGEK    S P     +  GR +   GS+   +    ++
Sbjct: 346 MSPSQQLYLVLGRLWLYERKPAGEKKSFSSRPGSYSGKESGRQR---GSQTGLLSAAKLI 402

[Close]
BLAST of MC01g_new0340 vs. NCBI nr
Match: PKI40732.1 (hypothetical protein CRG98_038870 [Punica granatum])

HSP 1 Score: 51.2 bits (121), Expect = 1.25e-04
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MSPSQQLYLVLGRLWLYERKPAGEKSLS 28
           MSPSQQLYLVLGRLWLYERK AG+   S
Sbjct: 78  MSPSQQLYLVLGRLWLYERKTAGDSGYS 105

[Close]
BLAST of MC01g_new0340 vs. ExPASy TrEMBL
Match: A0A2P5X0Q9 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23790 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.58e-07
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 1   MSPSQQLYLVLGRLWLYERKPAGEKSL--SLPDDAVRRFGGRSKKGPGSRWSRIECPTIV 58
           MSPSQQLYLVLGRLWLYERKPAGEK    S P     +  GR +   GS+   +    ++
Sbjct: 346 MSPSQQLYLVLGRLWLYERKPAGEKKSFSSRPGSYSGKESGRQR---GSQTGLLSAAKLI 402

[Close]
BLAST of MC01g_new0340 vs. ExPASy TrEMBL
Match: A0A2I0I9S2 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_038870 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.06e-05
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 1   MSPSQQLYLVLGRLWLYERKPAGEKSLS 28
           MSPSQQLYLVLGRLWLYERK AG+   S
Sbjct: 78  MSPSQQLYLVLGRLWLYERKTAGDSGYS 105

[Close]
BLAST of MC01g_new0340 vs. ExPASy TrEMBL
Match: A0A101LZ49 (Uncharacterized protein OS=Picea glauca OX=3330 GN=ABT39_MTgene5022 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.33e-04
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 84  MTIRCSRRRRRQGRGTEHVLSSTSIRH 110
           + I CSRRRRRQGRGTEHVLSSTSIRH
Sbjct: 111 IPIICSRRRRRQGRGTEHVLSSTSIRH 137

[Close]
BLAST of MC01g_new0340 vs. ExPASy TrEMBL
Match: A0A5N6NMC0 (COX2_CUA domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_21330 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.38e-04
Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 4   SQQLYLVLGRLWLYERKPAGEKSLSLP---DDAVRRFGGRSKK-GPGSRWSRIECPT--- 63
           S+ L LVLGR+WLYERK A EKSLSLP      V R G R+     G  WS         
Sbjct: 521 SKALELVLGRIWLYERKLAVEKSLSLPVPGHRCVHRRGNRNASCSAGVAWSESVAGVRMH 580

The following BLAST results are available for this feature:
BLAST of MC01g_new0340 vs.
Match NameE-valueIdentityDescription
BLAST of MC01g_new0340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF9604346.12.97e-1043.64hypothetical protein IFM89_006353 [Coptis chinensis][more]
KAF3974216.12.69e-0786.67hypothetical protein CMV_002445 [Castanea mollissima][more]
GEW92190.11.09e-0670.45photosystem I PsaA/PsaB [Tanacetum cinerariifolium][more]
PPR96875.11.56e-0651.67hypothetical protein GOBAR_AA23790 [Gossypium barbadense][more]
PKI40732.11.25e-0482.14hypothetical protein CRG98_038870 [Punica granatum][more]
BLAST of MC01g_new0340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5X0Q97.58e-0751.67Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23790 PE=4 SV... [more]
A0A2I0I9S26.06e-0582.14Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_038870 PE=4 SV=1[more]
A0A101LZ491.33e-0488.89Uncharacterized protein OS=Picea glauca OX=3330 GN=ABT39_MTgene5022 PE=4 SV=1[more]
A0A5N6NMC07.38e-0446.27COX2_CUA domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_21330... [more]
BLAST of MC01g_new0340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0340.1MC01g_new0340.1mRNA