MC01g_new0331 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0331
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribose-phosphate pyrophosphokinase 1-like
Location	MC01: 13751733 .. 13751990 (+)
RNA-Seq Expression	MC01g_new0331
Synteny	MC01g_new0331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGGATGCTGCAAACAGGCTTTCTGCAATTGCTGCCGAAATGGGGCAACTGCAAAATCAAATTCAAGAGCGCCGTAGAATGCTAACTTTTTTTTTGAGGAGTGTTAGAACACTGGATCCTGCCTTGAAAGAAGCGCGCATTCGCAATGCCAGAGAGCGTATCGAGGATTTGGAGGGGAGGCAGCAAGCGCTGCGGGCGGAGCAGCAAGCACTCATAGTGCAGGCTGCCACCTACGGGCACCGGGGATACTAG

mRNA sequence

ATGGCTATGGATGCTGCAAACAGGCTTTCTGCAATTGCTGCCGAAATGGGGCAACTGCAAAATCAAATTCAAGAGCGCCGTAGAATGCTAACTTTTTTTTTGAGGAGTGTTAGAACACTGGATCCTGCCTTGAAAGAAGCGCGCATTCGCAATGCCAGAGAGCGTATCGAGGATTTGGAGGGGAGGCAGCAAGCGCTGCGGGCGGAGCAGCAAGCACTCATAGTGCAGGCTGCCACCTACGGGCACCGGGGATACTAG

Coding sequence (CDS)

ATGGCTATGGATGCTGCAAACAGGCTTTCTGCAATTGCTGCCGAAATGGGGCAACTGCAAAATCAAATTCAAGAGCGCCGTAGAATGCTAACTTTTTTTTTGAGGAGTGTTAGAACACTGGATCCTGCCTTGAAAGAAGCGCGCATTCGCAATGCCAGAGAGCGTATCGAGGATTTGGAGGGGAGGCAGCAAGCGCTGCGGGCGGAGCAGCAAGCACTCATAGTGCAGGCTGCCACCTACGGGCACCGGGGATACTAG

Protein sequence

MAMDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLEGRQQALRAEQQALIVQAATYGHRGY

Homology

[Close]

BLAST of MC01g_new0331 vs. NCBI nr
Match: PLY71280.1 (hypothetical protein LSAT_0X38260 [Lactuca sativa] >PLY79829.1 hypothetical protein LSAT_8X11761 [Lactuca sativa] >PLY99082.1 hypothetical protein LSAT_6X64680 [Lactuca sativa])

HSP 1 Score: 133 bits (334), Expect = 1.72e-38
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAMDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLE 60
          MAMDAANRLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARIR ARERIEDLE
Sbjct: 1  MAMDAANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLE 60

Query: 61 GRQQALRAEQQALIVQAATYGHRG 84
          GRQQALRAEQQALIVQA T+GHRG
Sbjct: 61 GRQQALRAEQQALIVQAVTHGHRG 84

[Close]

BLAST of MC01g_new0331 vs. NCBI nr
Match: CAE5979087.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 126 bits (316), Expect = 9.55e-36
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MAMDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLE 60
          M MDAANRLSAIAAEMGQLQN+IQERRR+L  FLRSVRTLDPA KEARIR ARERIEDLE
Sbjct: 1  MDMDAANRLSAIAAEMGQLQNEIQERRRVLNLFLRSVRTLDPARKEARIRAARERIEDLE 60

Query: 61 GRQQALRAEQQALIVQAATYGHRG 84
          GRQQALRAEQQALIV+A ++ H G
Sbjct: 61 GRQQALRAEQQALIVEAVSHVHGG 84

[Close]

BLAST of MC01g_new0331 vs. NCBI nr
Match: PLY63844.1 (hypothetical protein LSAT_7X67861 [Lactuca sativa])

HSP 1 Score: 124 bits (311), Expect = 5.53e-35
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MAMDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLE 60
          MAMD ANRLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARI  ARE IEDLE
Sbjct: 1  MAMDVANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARICAARECIEDLE 60

Query: 61 GRQQALRAEQQALIVQAATYGHRG 84
          GRQQALRAEQQAL+VQA T+GHRG
Sbjct: 61 GRQQALRAEQQALMVQAVTHGHRG 84

[Close]

BLAST of MC01g_new0331 vs. NCBI nr
Match: KZM89910.1 (hypothetical protein DCAR_022727 [Daucus carota subsp. sativus])

HSP 1 Score: 120 bits (301), Expect = 1.75e-33
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 3  MDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLEGR 62
          MDAANRLSAIAAEMGQLQN+IQE RR+L F LRSVRT+DPA KEARIR  RERIE LE R
Sbjct: 1  MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKEARIRATRERIEGLEER 60

Query: 63 QQALRAEQQALIVQAATYGHRG 84
           QALRAEQ+ALIV+AAT+GHRG
Sbjct: 61 LQALRAEQEALIVRAATHGHRG 82

[Close]

BLAST of MC01g_new0331 vs. NCBI nr
Match: CAB4072346.1 (unnamed protein product [Lactuca saligna] >CAB4074369.1 unnamed protein product [Lactuca saligna] >CAB4077239.1 unnamed protein product [Lactuca saligna])

HSP 1 Score: 120 bits (302), Expect = 2.48e-33
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 8   RLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLEGRQQALR 67
           RLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARIR ARERIEDLEGRQQALR
Sbjct: 30  RLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLEGRQQALR 89

Query: 68  AEQQALIVQAATYGHRG 84
           AEQQALIVQA T+GHRG
Sbjct: 90  AEQQALIVQAVTHGHRG 106

[Close]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL
Match: A0A2J6K863 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38260 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 8.31e-39
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAMDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLE 60
          MAMDAANRLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARIR ARERIEDLE
Sbjct: 1  MAMDAANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLE 60

Query: 61 GRQQALRAEQQALIVQAATYGHRG 84
          GRQQALRAEQQALIVQA T+GHRG
Sbjct: 61 GRQQALRAEQQALIVQAVTHGHRG 84

[Close]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL
Match: A0A2J6JM05 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X67861 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 2.68e-35
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MAMDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLE 60
          MAMD ANRLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARI  ARE IEDLE
Sbjct: 1  MAMDVANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARICAARECIEDLE 60

Query: 61 GRQQALRAEQQALIVQAATYGHRG 84
          GRQQALRAEQQAL+VQA T+GHRG
Sbjct: 61 GRQQALRAEQQALMVQAVTHGHRG 84

[Close]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL
Match: A0A161ZTF6 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022727 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 8.46e-34
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 3  MDAANRLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLEGR 62
          MDAANRLSAIAAEMGQLQN+IQE RR+L F LRSVRT+DPA KEARIR  RERIE LE R
Sbjct: 1  MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKEARIRATRERIEGLEER 60

Query: 63 QQALRAEQQALIVQAATYGHRG 84
           QALRAEQ+ALIV+AAT+GHRG
Sbjct: 61 LQALRAEQEALIVRAATHGHRG 82

[Close]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL
Match: A0A6S7LWT6 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1276 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 1.20e-33
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 8   RLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLEGRQQALR 67
           RLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARIR ARERIEDLEGRQQALR
Sbjct: 30  RLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLEGRQQALR 89

Query: 68  AEQQALIVQAATYGHRG 84
           AEQQALIVQA T+GHRG
Sbjct: 90  AEQQALIVQAVTHGHRG 106

[Close]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL
Match: A0A6S7N0X6 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS22300 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 5.04e-33
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 8   RLSAIAAEMGQLQNQIQERRRMLTFFLRSVRTLDPALKEARIRNARERIEDLEGRQQALR 67
           RLSAIAAEMGQLQN+I+ERRR+L  F RSVRTLDP  KEARIR ARERIEDLEGRQQALR
Sbjct: 31  RLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLEGRQQALR 90

Query: 68  AEQQALIVQAATYGHRG 84
           AE+QALIVQA T+GHRG
Sbjct: 91  AEKQALIVQAVTHGHRG 107

The following BLAST results are available for this feature:

BLAST of MC01g_new0331 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0331 vs. NCBI nr


Match Name	E-value	Identity	Description
PLY71280.1	1.72e-38	86.90	hypothetical protein LSAT_0X38260 [Lactuca sativa] >PLY79829.1 hypothetical prot...	[more]
CAE5979087.1	9.55e-36	84.52	unnamed protein product [Arabidopsis arenosa]	[more]
PLY63844.1	5.53e-35	82.14	hypothetical protein LSAT_7X67861 [Lactuca sativa]	[more]
KZM89910.1	1.75e-33	81.71	hypothetical protein DCAR_022727 [Daucus carota subsp. sativus]	[more]
CAB4072346.1	2.48e-33	85.71	unnamed protein product [Lactuca saligna] >CAB4074369.1 unnamed protein product ...	[more]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2J6K863	8.31e-39	86.90	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38260 PE=4 SV=1	[more]
A0A2J6JM05	2.68e-35	82.14	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X67861 PE=4 SV=1	[more]
A0A161ZTF6	8.46e-34	81.71	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022727 ...	[more]
A0A6S7LWT6	1.20e-33	85.71	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1276 PE=4 SV=1	[more]
A0A6S7N0X6	5.04e-33	84.42	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS22300 PE=4 SV=1	[more]

BLAST of MC01g_new0331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..76
None	No IPR available	PANTHER	PTHR36344:SF2	SUBFAMILY NOT NAMED	coord: 2..80
None	No IPR available	PANTHER	PTHR36344	FAMILY NOT NAMED	coord: 2..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0331.1	MC01g_new0331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006260	DNA replication
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000166	nucleotide binding