MC01g_new0328 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0328
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 13738718 .. 13740216 (+)
RNA-Seq Expression	MC01g_new0328
Synteny	MC01g_new0328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGCCTCTCAACATCCCTGTCCGATGCAATGAAAGGTCCCTTTGGTCTTGTCTTAATTGACAACGGATCAGGCCTAAACGTTTGCCCCTTGCGAACGTAATAGCTGAATTGACTAGTCTAGTCATCTCTTCTCCCTCTTCGCCAAGAAGGAGAACTAAGAACATAGATACAATATAGAAAAGATTGCCTACTATCGAGCTCACAAAGGAGCCGGAGTAGTCCTCAACATCTCGTAGTAAATAAACTCCATAACGGAAGATCATTTTAGACTTCATTTCTTTTTTGTTTTGGTTTCGCTGCACTTCCCCAGCTTGCTAAAACCTCTACTGCCTGTTCTGGTTTACATGTGAAATTAGGACTCGTGACTTAACACCACCCCCTATTCACTTGTTTAGTCAACCGGGAATGTAATATTTCAGCGCGGAGGCACATCCGGAACAGGTTTCGAGATAAGCCAATCGGTCTGCAAACAAGAGTTGGACAGCTTGACCCGCATTGCCTGATGGCTCGAGTAAGAGAGGCTCGATGAAATTGAGTATGCTTCACACATTCAGTCTTTCTTCTCCCTTACGTGATAGGGCTCTAAAGCCAAGTGCTTGCTTCAGTTACAGCCCTGAATTGAATGGGGTGGGAAAGAAAGGTTCGGAAATCGAGTTTTTTGCCCGAGTCCAGTGGTAATGAGGAAAGGAAGGACTGCTACGGAAGCTGGTCAGCCTAAGCAACAAGTAAAGGAAAGGCCCTGTTCCAGTATTGGAGGAAGCATGGCATAGAAAGCAGGGTATGTCATGGGTTGTAGGGAAGAGGTAACACGTGTACATGAAAGCAAGCGAGAGCAGAGCGTAGGGGTGTCCACGGAGAAACCACTCCAAAGTCATAATGTCTCAAAACGAGGAGGCCATATGGAAACAAGCTGTTAAACTTCCAAGAGAAAGAAGATTGACCCAATCAAACAGGCGATAAAATCTCTTGACTCTTGATCTTCTACAAATTTATCAGCCTCAGTATCTCNGCCGTTTTCGAGTAATAATCTAACGCCAGCTAGGTTCAGGATGAGTTAGAATCGTCACTTACTGTTTATGATTCCCATTCTTTTGGCCTCCTCTCTTTGTATAAATAATTAGTGGAGTTTCGTTTCTTCTTCTTCACCCGGTATTAGATTAGTGTCTTCAAACTCCCCGTCTCGTCTCGCCGAGAGGCTTGTTGTGGTCCTTATTGACCTTACTTCCGCTACCTGACCGTCAAGCATGGAACCCTACGGAAGGGTGAGCCTGTCCCCTAACAACCCTTATCTCTCTTCTTACTTATGCGTTGGTGCATTCACTGAAGCAGCCGAAGAAAGAGGATAAGAATAAGGCGCATCCCCCATCTGCTGCATCTAAATATGCTGTTTCATCCGCTGAGACAAAAGCATATGAATCAACTGTTTCAAATGAAGAAGAACCACTAAAAAAGAAAAAGAAAAGACGTCCATTTATATTCAAGGGAGTGCGGTGA

mRNA sequence

ATGTCTGGCCTCTCAACATCCCTGTCCGATGCAATGAAAGCGCGGAGGCACATCCGGAACAGGTTTCGAGATAAGCCAATCGGTCTGCAAACAAGAGTTGGACAGCTTGACCCGCATTGCCTGATGGCTCGACCGAAGAAAGAGGATAAGAATAAGGCGCATCCCCCATCTGCTGCATCTAAATATGCTGTTTCATCCGCTGAGACAAAAGCATATGAATCAACTGTTTCAAATGAAGAAGAACCACTAAAAAAGAAAAAGAAAAGACGTCCATTTATATTCAAGGGAGTGCGGTGA

Coding sequence (CDS)

ATGTCTGGCCTCTCAACATCCCTGTCCGATGCAATGAAAGCGCGGAGGCACATCCGGAACAGGTTTCGAGATAAGCCAATCGGTCTGCAAACAAGAGTTGGACAGCTTGACCCGCATTGCCTGATGGCTCGACCGAAGAAAGAGGATAAGAATAAGGCGCATCCCCCATCTGCTGCATCTAAATATGCTGTTTCATCCGCTGAGACAAAAGCATATGAATCAACTGTTTCAAATGAAGAAGAACCACTAAAAAAGAAAAAGAAAAGACGTCCATTTATATTCAAGGGAGTGCGGTGA

Protein sequence

MSGLSTSLSDAMKARRHIRNRFRDKPIGLQTRVGQLDPHCLMARPKKEDKNKAHPPSAASKYAVSSAETKAYESTVSNEEEPLKKKKKRRPFIFKGVR

Homology

[Close]

BLAST of MC01g_new0328 vs. NCBI nr
Match: KAF5204649.1 (Gag-pro-like protein [Thalictrum thalictroides])

HSP 1 Score: 48.1 bits (113), Expect = 8.60e-04
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 56  PSAASKYAVSSAETKAYESTVSNEEEPLKKKKKRRPFIFKG 96
           PSAASKYAVSSAETKAYEST+SNEE+   +K+K   +  KG
Sbjct: 244 PSAASKYAVSSAETKAYESTLSNEEDATTQKEKTSIWEGKG 284

[Close]

BLAST of MC01g_new0328 vs. ExPASy TrEMBL
Match: A0A7J6X4J4 (Gag-pro-like protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_005764 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.17e-04
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 56  PSAASKYAVSSAETKAYESTVSNEEEPLKKKKKRRPFIFKG 96
           PSAASKYAVSSAETKAYEST+SNEE+   +K+K   +  KG
Sbjct: 244 PSAASKYAVSSAETKAYESTLSNEEDATTQKEKTSIWEGKG 284

The following BLAST results are available for this feature:

BLAST of MC01g_new0328 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0328 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5204649.1	8.60e-04	68.29	Gag-pro-like protein [Thalictrum thalictroides]	[more]

BLAST of MC01g_new0328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6X4J4	4.17e-04	68.29	Gag-pro-like protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_005764 PE=4 S...	[more]

BLAST of MC01g_new0328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0328.1	MC01g_new0328.1	mRNA