MC01g_new0253 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0253
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationMC01: 10229631 .. 10231112 (+)
RNA-Seq ExpressionMC01g_new0253
SyntenyMC01g_new0253
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCTAATCCCAGCCTGAGTATCCTTGGTAAACCAACACCCCAATTCCATAATAAAAAATGGGGTAAGTGGCCTCAACAAGCCCCCTCCACCAGTCCCCAATGTCAAATATGTGGCAAGCTTGGTCATACTGCCTCAACGTATTATCATTGCATGAATTCCCAATACCCAACCCCACCTCAAACTACACCACAAAAGCTTATTTCCATACTTTTCAACCTCATCAGCCTGCTCACTCAACCACTGAAACTCATTTCTCTTTTTCTCAGTCGTCTAGTCACCCAGATGAAGCTTGGTTTATGGATTCTGGTGCTACTCATCACATTACACCATATATCTCTAACCTTCAAACGTCTTCTCCTCTGTCTCTTCCTTGCCTACCAAAATTAGAGAACATCATCATTATCCTTTTGTTTCTTCCCCCCATTTAATGCTCCCTCTATCGACACCCCTTCCATATTCAGCTCCTCTTTCCACCCCTCCCCTGTCTCCCTCTTTTTCCCCTACTGTTGAATCATTCACTGCTTATCACCATGCAAATAGTTCTTTATCTCCACCACCATCCTCTTCACCTGAACCTAAAATGCTTACCACACCTTCCACCCCCACCCAATCCCCTTGACCTCATCTGCAACCCCTTATTCACTATCACCCACATCCTCTCCTATACCGGCCACTTCACCCGTTCAACCTATCTCAACCAATATTCATCCTATGATCACTCGTTTGAAAGCTGGAATTTTTAAACCAGAAGCTTGGCTATCCGCCCTCCCCTCCTCTGTCCTTACATTACCTTTGGAACTTACCAACTATAAAGTAGCATTGGAAAATTCGGATTGGAAACTAGCTATGGTTGCTGAGTATGATGCTCTAATTAGAAACAACACGTGGTCTCTTGTCTCACTTCCCCCATACTGAAAAGTGCTTGGTTGTAAATGGGTTTTTCGACTCAAACTTCGTCCAAATGGTGAGATTGATCGTTATAAGGTTCGGTTAGTTGTTCAAAGGTACACACAAGCGTATGACATTGATTATTTTGAAACATTCAGTCCCGTTGTCAAGCCAACTACAATACGAATTGTACTCTCCCTAGCCATCTCCTTTAATTGGGTCGTTCGACAACTTGACGTTCATAATGCTTTTCTTTATAGAGACCTAAATGAGGAGGTGTTTATGTGGCAGCCACCCAGTTTTGTCAAGCCCATCACCCGAACCATGTTTTAAAGCTTCATAAATCCCTTTATGGCTTAAAACAAAGTCCGTGTGCTTGGTTTTTCAAGCTCAACTCATGTTTGTTGGAATGGAGCTTCCACGCATCAAAAGCATACTCTTCTTTGTTGAATTTTAAGGATTGGCAGAATATTGTTGTGTTCCTTATCTACGTTGATGACATTCTTGTTACCGGTAACAATATTTCTCTTTTGCAACGTTTAATCTCTGATCTCAATAGATGTTTTTCCTTGAAGGATTTGGGTGATGCT

mRNA sequence

ATGATCACTCGTTTGAAAGCTGGAATTTTTAAACCAGAAGCTTGGCTATCCGCCCTCCCCTCCTCTGTCCTTACATTACCTTTGGAACTTACCAACTATAAAGTAGCATTGGAAAATTCGGATTGGAAACTAGCTATGGTTGCTGAGTATGATGCTCTAATTAGAAACAACACGTGGTCTCTTGTCTCACTTCCCCCATACTGA

Coding sequence (CDS)

ATGATCACTCGTTTGAAAGCTGGAATTTTTAAACCAGAAGCTTGGCTATCCGCCCTCCCCTCCTCTGTCCTTACATTACCTTTGGAACTTACCAACTATAAAGTAGCATTGGAAAATTCGGATTGGAAACTAGCTATGGTTGCTGAGTATGATGCTCTAATTAGAAACAACACGTGGTCTCTTGTCTCACTTCCCCCATACTGA

Protein sequence

MITRLKAGIFKPEAWLSALPSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNTWSLVSLPPY
Homology
BLAST of MC01g_new0253 vs. NCBI nr
Match: XP_038885719.1 (uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 1.15e-20
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0

Query: 1  MITRLKAGIFKPEAWLSALPSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNTWS 60
          MITR K+ IFKP+A L+ +PS+  T+P+E  NYKVAL +  WK  MVAEY+ALIRNNTWS
Sbjct: 1  MITRSKSRIFKPKALLAIVPSTSPTIPIEPPNYKVALADPQWKQVMVAEYEALIRNNTWS 60

Query: 61 LVSLPP 66
          LV LPP
Sbjct: 61 LVPLPP 66

BLAST of MC01g_new0253 vs. NCBI nr
Match: KYP34165.1 (Copia protein [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 1.03e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 1  MITRLKAGIFKPEAWLSALPSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNTWS 60
          M+TR KAGIFKP+ +L+           E TN   ALE+  WK AM AEYDAL++N TW 
Sbjct: 1  MVTRAKAGIFKPKVYLATT---------EPTNVAQALEHKQWKQAMQAEYDALLKNCTWD 57

Query: 61 LVSLPP 66
          LVSLPP
Sbjct: 61 LVSLPP 57

BLAST of MC01g_new0253 vs. NCBI nr
Match: KAG8481098.1 (hypothetical protein CXB51_025888 [Gossypium anomalum])

HSP 1 Score: 67.0 bits (162), Expect = 6.71e-11
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 1   MITRLKAGIFKPEAWLSALPSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNTWS 60
           MITR KAGIFKP+A        V  + LE  + + AL + DW+LA+ AEYDALI N+TW 
Sbjct: 155 MITRSKAGIFKPKAL------CVANVELEPVSIEEALAHPDWRLAVQAEYDALIANSTWE 214

Query: 61  LVSLPP 66
           L SLPP
Sbjct: 215 LYSLPP 214

BLAST of MC01g_new0253 vs. NCBI nr
Match: CAN64002.1 (hypothetical protein VITISV_023116 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 6.81e-11
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   MITRLKAGIFKPEAWLSAL--PSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNT 60
           MITR K+GIFKP+ ++ A+  PSSV T          AL+  +WK AMV EYDAL RNNT
Sbjct: 717 MITRTKSGIFKPKFFIVAVREPSSVAT----------ALQQDEWKKAMVVEYDALQRNNT 773

Query: 61  WSLVSLP 65
           WSLV LP
Sbjct: 777 WSLVPLP 773

BLAST of MC01g_new0253 vs. NCBI nr
Match: KAG8500586.1 (hypothetical protein CXB51_002693 [Gossypium anomalum])

HSP 1 Score: 67.0 bits (162), Expect = 6.86e-11
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 1    MITRLKAGIFKPEAWLSALPSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNTWS 60
            MITR KAGIFKP+A        V  + LE  + + AL + DW+LA+ AEYDALI N+TW 
Sbjct: 1003 MITRSKAGIFKPKAL------CVANVELEPVSIEEALAHPDWRLAVQAEYDALIANSTWE 1062

Query: 61   LVSLPP 66
            L SLPP
Sbjct: 1063 LCSLPP 1062

BLAST of MC01g_new0253 vs. ExPASy TrEMBL
Match: A0A151QVD2 (Copia protein OS=Cajanus cajan OX=3821 GN=KK1_044911 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.97e-12
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 1  MITRLKAGIFKPEAWLSALPSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNTWS 60
          M+TR KAGIFKP+ +L+           E TN   ALE+  WK AM AEYDAL++N TW 
Sbjct: 1  MVTRAKAGIFKPKVYLATT---------EPTNVAQALEHKQWKQAMQAEYDALLKNCTWD 57

Query: 61 LVSLPP 66
          LVSLPP
Sbjct: 61 LVSLPP 57

BLAST of MC01g_new0253 vs. ExPASy TrEMBL
Match: A5BYA6 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_023116 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.30e-11
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   MITRLKAGIFKPEAWLSAL--PSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNT 60
           MITR K+GIFKP+ ++ A+  PSSV T          AL+  +WK AMV EYDAL RNNT
Sbjct: 717 MITRTKSGIFKPKFFIVAVREPSSVAT----------ALQQDEWKKAMVVEYDALQRNNT 773

Query: 61  WSLVSLP 65
           WSLV LP
Sbjct: 777 WSLVPLP 773

BLAST of MC01g_new0253 vs. ExPASy TrEMBL
Match: A0A438JCR0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1900 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.14e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   MITRLKAGIFKPEAWLSAL--PSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNT 60
           MITR K+GI KP+ +++A+  PSSV            AL+  +WK AMVAEYDAL RNNT
Sbjct: 704 MITRAKSGIVKPKIFIAAIREPSSV----------SAALQQDEWKKAMVAEYDALQRNNT 760

Query: 61  WSLVSLP 65
           WSLV LP
Sbjct: 764 WSLVPLP 760

BLAST of MC01g_new0253 vs. ExPASy TrEMBL
Match: A5BFT3 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_017741 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.18e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   MITRLKAGIFKPEAWLSAL--PSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNT 60
           MITR K+GI KP+ +++A+  PSSV            AL+  +WK AMVAEYDAL RNNT
Sbjct: 916 MITRAKSGIVKPKIFIAAIREPSSV----------SAALQQDEWKKAMVAEYDALQRNNT 972

Query: 61  WSLVSLP 65
           WSLV LP
Sbjct: 976 WSLVPLP 972

BLAST of MC01g_new0253 vs. ExPASy TrEMBL
Match: A0A438ES13 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4202 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.39e-11
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 1   MITRLKAGIFKPEAWLSAL--PSSVLTLPLELTNYKVALENSDWKLAMVAEYDALIRNNT 60
           MITR K+GI KP+ +++A+  PSSV            AL+  +WK AMVAEYDAL RNNT
Sbjct: 803 MITRAKSGIVKPKIFIAAVREPSSV----------SAALQQDEWKKAMVAEYDALQRNNT 859

Query: 61  WSLVSLP 65
           WSLV LP
Sbjct: 863 WSLVPLP 859

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038885719.11.15e-2065.15uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida][more]
KYP34165.11.03e-1154.55Copia protein [Cajanus cajan][more]
KAG8481098.16.71e-1154.55hypothetical protein CXB51_025888 [Gossypium anomalum][more]
CAN64002.16.81e-1156.72hypothetical protein VITISV_023116 [Vitis vinifera][more]
KAG8500586.16.86e-1154.55hypothetical protein CXB51_002693 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
A0A151QVD24.97e-1254.55Copia protein OS=Cajanus cajan OX=3821 GN=KK1_044911 PE=4 SV=1[more]
A5BYA63.30e-1156.72Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A438JCR06.14e-1155.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5BFT36.18e-1155.22Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A438ES138.39e-1155.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0253.1MC01g_new0253.1mRNA