MC01g_new0240 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0240
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 9615655 .. 9615999 (+)
RNA-Seq Expression	MC01g_new0240
Synteny	MC01g_new0240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAATCGCAGCAAAAAATGGCTTCAAAATGGAACGAATCAATCTGAAATCAGAAACCCAGATGCGAAAAAACGCCGAACGATGCAGAAATGTGATCTGGGTCGTCGTTTATAAGGCAGAAGGAGCGGAAATTGACGGGAATCGAAAGTGGGGTGCGTCCGAAACAAGGATCCAGAGTCGGACACGTAGAGAGAAAACCGTAGAAAAAGAAGAGGACGAAGAACAGGAGAGTGTGGGAACAGAAGGAGGAAGTGGGAGAAGATATTATATAGAAACAGGAACAGAGGCGAAAGAGGGGAAAACCAGGGGCCATTTGGAACAGCAGGAATTGCTTCGCTAG

mRNA sequence

ATGACAAGAATCGCAGCAAAAAATGGCTTCAAAATGGAACGAATCAATCTGAAATCAGAAACCCAGATGCGAAAAAACGCCGAACGATGCAGAAATGTGATCTGGGTCGTCGTTTATAAGGCAGAAGGAGCGGAAATTGACGGGAATCGAAAGTGGGGTGCGTCCGAAACAAGGATCCAGAGTCGGACACGTAGAGAGAAAACCGTAGAAAAAGAAGAGGACGAAGAACAGGAGAGTGTGGGAACAGAAGGAGGAAGTGGGAGAAGATATTATATAGAAACAGGAACAGAGGCGAAAGAGGGGAAAACCAGGGGCCATTTGGAACAGCAGGAATTGCTTCGCTAG

Coding sequence (CDS)

ATGACAAGAATCGCAGCAAAAAATGGCTTCAAAATGGAACGAATCAATCTGAAATCAGAAACCCAGATGCGAAAAAACGCCGAACGATGCAGAAATGTGATCTGGGTCGTCGTTTATAAGGCAGAAGGAGCGGAAATTGACGGGAATCGAAAGTGGGGTGCGTCCGAAACAAGGATCCAGAGTCGGACACGTAGAGAGAAAACCGTAGAAAAAGAAGAGGACGAAGAACAGGAGAGTGTGGGAACAGAAGGAGGAAGTGGGAGAAGATATTATATAGAAACAGGAACAGAGGCGAAAGAGGGGAAAACCAGGGGCCATTTGGAACAGCAGGAATTGCTTCGCTAG

Protein sequence

MTRIAAKNGFKMERINLKSETQMRKNAERCRNVIWVVVYKAEGAEIDGNRKWGASETRIQSRTRREKTVEKEEDEEQESVGTEGGSGRRYYIETGTEAKEGKTRGHLEQQELLR

Homology

[Close]

BLAST of MC01g_new0240 vs. NCBI nr
Match: KGN53914.1 (hypothetical protein Csa_019171 [Cucumis sativus])

HSP 1 Score: 46.6 bits (109), Expect = 4.69e-04
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 66  EKTVEKEEDEEQESVGTEGGSG-RRYYIETGTEAKEGKTRGHLEQQELL 113
           EK   +EE+E  E   TE GSG R+YYIE   E KE KT GHLEQ+ELL
Sbjct: 21  EKVTSQEEEEGDEDERTEKGSGIRKYYIERRGEEKERKTGGHLEQEELL 69

[Close]

BLAST of MC01g_new0240 vs. ExPASy TrEMBL
Match: A0A0A0KYK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G188420 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.27e-04
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 66  EKTVEKEEDEEQESVGTEGGSG-RRYYIETGTEAKEGKTRGHLEQQELL 113
           EK   +EE+E  E   TE GSG R+YYIE   E KE KT GHLEQ+ELL
Sbjct: 21  EKVTSQEEEEGDEDERTEKGSGIRKYYIERRGEEKERKTGGHLEQEELL 69

The following BLAST results are available for this feature:

BLAST of MC01g_new0240 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53914.1	4.69e-04	59.18	hypothetical protein Csa_019171 [Cucumis sativus]	[more]

BLAST of MC01g_new0240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYK2	2.27e-04	59.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G188420 PE=4 SV=1	[more]

BLAST of MC01g_new0240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0240.1	MC01g_new0240.1	mRNA