MC01g_new0234 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0234
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 9491296 .. 9492477 (+)
RNA-Seq ExpressionMC01g_new0234
SyntenyMC01g_new0234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACTTTTGACTCGGTCCGGAAGGAGGAATTATGTTACCTTTTGGATGCATTATAGAAAAGGGCCATAATCCATTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTTGGCCTAGAAGGAGGAATTATGTTACCTTTTGAATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTTGACCTAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACAAGTCTGAGAACCTTTGACTTGGCCCAGAAGGATGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGTCTCGGCTCAGAAGGAGGAATTATGTTACCTTTTGGATGTATTACAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

mRNA sequence

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACAAGTCTGAGAACCTTTGACTTGGCCCAGAAGGATGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGTCTCGGCTCAGAAGGAGGAATTATGTTACCTTTTGGATGTATTACAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

Coding sequence (CDS)

ATGGAGAAGGTGGTGAGTCCGAGAACCTTTGACTTGGTCCAGAAGGAGGTATTAGGTTACCTTTTGGATGCATTACAGAAAAGGTCCATAATCCCTTTGTCGGTGGAGGAGGTGATGAGTATGAGAATCTTTGACTCGGCCCAGAAGGAGGAATTAGGTTACCTTTTGGATGCATTACAAAAAATGGCCATAATCCATTCGTTGGAGGAGGAGAAAAGGGTCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACAAGTCTGAGAACCTTTGACTTGGCCCAGAAGGATGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGTCTCGGCTCAGAAGGAGGAATTATGTTACCTTTTGGATGTATTACAGAAAAGGGCCATAATCTCTTCGTTGGAGGAGGAGGTGACGAGTCTGAGAACCTTTGACTCGACCCAGAAGGAGAAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGTGGAATTATGTTACCTTTTGGATGCATTACAGAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGGTGACGAGTCCGAGAACCTTTGACTCGGCCCAGAAGGAGGAATTATGTTACCTTTTGGATGCATTACAAAAAAGGGCCATAATCCCTTCGTTGGAGGAGGAGTTGACGAGTCTGAGAACCTTTGACTCGGCCCAAAAGGAGGATTTATGTTAG

Protein sequence

MEKVVSPRTFDLVQKEVLGYLLDALQKRSIIPLSVEEVMSMRIFDSAQKEELGYLLDALQKMAIIHSLEEEKRVIISSLEEEVTSLRTFDSAQKEELCYLLDALQKRAIIPSLEEEVTSLRTFDLAQKDELCYLLDALQKRAIIPSLEEEVTSLRTFVSAQKEELCYLLDVLQKRAIISSLEEEVTSLRTFDSTQKEKLCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKEELCYLLDALQKRAIIPSLEEELTSLRTFDSAQKEDLC
Homology
[Close]
BLAST of MC01g_new0234 vs. NCBI nr
Match: WP_159911901.1 (hypothetical protein [Pantoea sp. 18069])

HSP 1 Score: 68.6 bits (166), Expect = 1.01e-08
Identity = 64/199 (32.16%), Postives = 110/199 (55.28%), Query Frame = 0 

Query: 26  QKRSIIPLSVEEVMSMRIFDSAQKEELGYLLDALQKMAIIHSLEEEKRVIISSLEEEVTS 85
           +K+ I+  S EE     I    Q++ +       +K A++ SLEEEK  +++SLEEE  +
Sbjct: 249 EKKEILISSFEEEKGELISSFKQEKIMLISSHKEEKYALVASLEEEKCALVASLEEEKCA 308

Query: 86  LRTFDSAQKEELCYLLDALQ--KRAIIPSLEEEVTSLRTFDLAQKDELCYLLDALQKRAI 145
           L    ++ +EE C L+ +L+  K A++ SLEEE  +L      +K  L   L+  +K A+
Sbjct: 309 LV---ASLEEEKCALVASLEEEKGALVASLEEEKGALVASLEEEKGALVVSLEE-EKCAL 368

Query: 146 IPSLEEEVTSLRTFVSAQKEELCYLLDVLQKRAIISSLEEEV-TSLRTFDSTQKEKLCYL 205
           + SLE E  +L + V  +KE L   L+  +K+A+ISS E++  T + +F++ +K  + +L
Sbjct: 369 LVSLEAEKGTLISSVEKEKEMLISFLEE-EKKALISSFEKDKRTLISSFENEKKSLIHFL 428

Query: 206 LDALQK--RAIIPSLEEEV 219
            +   K    ++ SL E V
Sbjct: 429 KEENNKDHERVLSSLNEVV 442

[Close]
BLAST of MC01g_new0234 vs. NCBI nr
Match: WP_033081307.1 (hypothetical protein [Colwellia psychrerythraea] >KGJ96369.1 FimV N-terminal domain-containing protein [Colwellia psychrerythraea])

HSP 1 Score: 66.2 bits (160), Expect = 6.68e-08
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 0 

Query: 76  ISSLEEEVTSLRTFDSAQKEELCYLLDALQKRAIIPSLEEEVTSLRTFDLAQKDELCYLL 135
           +  L+E+ TS+   D    +++  LLDA+   A  P +E+      T D+   D++  LL
Sbjct: 452 LGDLDEDETSVEAADVTDPDDIDALLDAVSDSAAEPEVED------TADVTDPDDIDALL 511

Query: 136 DALQKRAIIPSLEEEVTSLRTFVSAQKEELCYLLDVLQKRAIISSLEEEVTSLRTFDSTQ 195
           DA+ + A  P +E+      T      +++  LLD + + A    +E+      T D T 
Sbjct: 512 DAVSESAAEPEVED------TADVTDPDDIDALLDAVSESAAKPEVED------TADVTD 571

Query: 196 KEKLCYLLDALQKRAIIPSLEE--EVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEE-- 255
            + +  LLDA+ + A  P +E+  +VT P   D+        LLDA+ + A  P +E+  
Sbjct: 572 PDDIDALLDAVSESAAKPEVEDTADVTDPDDIDA--------LLDAVSESAAKPEVEDTA 631

Query: 256 EVTSPRTFDSAQKEELCYLLDALQKRAIIPSLEE 285
           +VT P   D+        LLDA+ + A  P +E+
Sbjct: 632 DVTDPDDIDA--------LLDAVSEPAAKPEVED 631

[Close]
BLAST of MC01g_new0234 vs. NCBI nr
Match: KAG9393778.1 (Leucine Rich repeat [Carpediemonas membranifera])

HSP 1 Score: 58.9 bits (141), Expect = 1.60e-05
Identity = 71/232 (30.60%), Postives = 113/232 (48.71%), Query Frame = 0 

Query: 74  VIISSLEEEVTSLRTFDSAQKEELCYLLDALQKRAIIPSL-----EEEVTSLRTFDLAQK 133
           V  S  EEE+ S R+  +A +EE    LD+   R+++ +      EEE+ S R+   A  
Sbjct: 571 VAASREEEELDSPRSLVAASREE--EELDS--PRSLVAASREEREEEELDSPRSLVAASH 630

Query: 134 DELCYLLDALQKRAIIPSLEEEVTSLRTFVSAQKEELCYLLDVLQKRAIISSLEEEVTSL 193
           +E    LD+ +        EEE+ S R+ V+A +EE    LD  +     S  EEE+ S 
Sbjct: 631 EE--EELDSPRSLVAASREEEELDSPRSLVAASREEREEELDSPRSLVAASREEEELDSP 690

Query: 194 RTFDSTQKEKLCYLLDALQKRAIIPSLEEEVTSPRTFDSAQKVELCYLLDALQKRAIIPS 253
           R+  +  +E+    LD+ +        EEE+ SPR+  +A + E    LD+ +       
Sbjct: 691 RSLVAASREE--EELDSPRSLVAASREEEELDSPRSLVAASREE--EELDSPRSLVAASR 750

Query: 254 LEEEVTSPRTFDSAQKEELCYLLDALQKRAIIPSLEEELTSLRTFDSAQKED 300
            EEE+ SPR+  +A +EE    LD+ +        EEEL S R+  +A +E+
Sbjct: 751 EEEELDSPRSLVAASREE--EELDSPRSLVAASHEEEELDSPRSLVAASREE 790

[Close]
BLAST of MC01g_new0234 vs. ExPASy TrEMBL
Match: A0A099L059 (FimV N-terminal domain-containing protein OS=Colwellia psychrerythraea OX=28229 GN=GAB14E_0316 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.23e-08
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 0 

Query: 76  ISSLEEEVTSLRTFDSAQKEELCYLLDALQKRAIIPSLEEEVTSLRTFDLAQKDELCYLL 135
           +  L+E+ TS+   D    +++  LLDA+   A  P +E+      T D+   D++  LL
Sbjct: 452 LGDLDEDETSVEAADVTDPDDIDALLDAVSDSAAEPEVED------TADVTDPDDIDALL 511

Query: 136 DALQKRAIIPSLEEEVTSLRTFVSAQKEELCYLLDVLQKRAIISSLEEEVTSLRTFDSTQ 195
           DA+ + A  P +E+      T      +++  LLD + + A    +E+      T D T 
Sbjct: 512 DAVSESAAEPEVED------TADVTDPDDIDALLDAVSESAAKPEVED------TADVTD 571

Query: 196 KEKLCYLLDALQKRAIIPSLEE--EVTSPRTFDSAQKVELCYLLDALQKRAIIPSLEE-- 255
            + +  LLDA+ + A  P +E+  +VT P   D+        LLDA+ + A  P +E+  
Sbjct: 572 PDDIDALLDAVSESAAKPEVEDTADVTDPDDIDA--------LLDAVSESAAKPEVEDTA 631

Query: 256 EVTSPRTFDSAQKEELCYLLDALQKRAIIPSLEE 285
           +VT P   D+        LLDA+ + A  P +E+
Sbjct: 632 DVTDPDDIDA--------LLDAVSEPAAKPEVED 631

The following BLAST results are available for this feature:
BLAST of MC01g_new0234 vs.
Match NameE-valueIdentityDescription
BLAST of MC01g_new0234 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_159911901.11.01e-0832.16hypothetical protein [Pantoea sp. 18069][more]
WP_033081307.16.68e-0828.04hypothetical protein [Colwellia psychrerythraea] >KGJ96369.1 FimV N-terminal dom... [more]
KAG9393778.11.60e-0530.60Leucine Rich repeat [Carpediemonas membranifera][more]
BLAST of MC01g_new0234 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A099L0593.23e-0828.04FimV N-terminal domain-containing protein OS=Colwellia psychrerythraea OX=28229 ... [more]
BLAST of MC01g_new0234 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0234.1MC01g_new0234.1mRNA