MC01g_new0216 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0216
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing protein
Location	MC01: 8518030 .. 8521839 (+)
RNA-Seq Expression	MC01g_new0216
Synteny	MC01g_new0216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAATGGAAGAGCGTTGTCAAGTGGGCACGACCTTACTTGAACAGGATCTGTTCTATAGGTTGTACAACTGTTTCCTTGAGTTCTAAGGAGGCAAGAACTAACGTCTGGTTGATGAACCACTGCCCTGCGGCTAGAGTGTGATTGATGGCTCTACCGGATCTTGGTCCGGCGGCTGTAGAGGATCGTTCGCGGCATGGCCTCGGTCCTGCCGGGATGGTCGCAGGGCGGTCTGACAGACTCCTACAACTTTTTTTCCCTTCTGGGTTTTCTTTCTTTTTGCTTGTGTTTAAACGAATCGAAGAAGATAGAGGCGTTCGTTTTTTGAATTTGATTTGCTTCGTTTTCGTAATTTTCAGTACAGACACCATTCCCTTCCATTCCCATGTCCTCCGGCGACCTTTTCTGTTCTTCTCCATCCCTTTTAAGCCCTCTTTTTTACTCTCTTCCCATTACTTGACAACAACCATTCACTTCTCACAACCACCGACGCCTTCTCTTCTTCTTCTCCACGCATCCCGAGACCTTCATAGGCTGAAGCAAATCCATGCTTCTATCATTCTCTCATCTGGGTTCGACACTGTCTCCACCGCCTCCAAGCTCGTACGCCTCTATGCCCACTTTGACGATCTTCCCAGTGCCGTCTCTGTTCTCAATGCCTTCCCTGCACCTGAACCCGTGTTGTGGAACTCGATCATCAAGTCTCACGTTGAATCGGGTTTGTTTGTTTCTGCCCTTTTGTTATATGAAAAGATGAGGGAATTGGGAGTTGAGCACGATGGCTTTACGTTTCCGATGGTGAACCGAATTATTATGTCGATTCAGCTTGATGTGGTCTATGCGGGAATGGTTCACTGTGTTGGAATTCGGATGGGGTTTGGTGCGGATTTATATTTCTGTAATACAATGATAGAAGTTTATGGGAAATGTGGGTGTTTGGTTTCTGCTCGTAATGTGTTCGATGAAATGCCTCACAGAGACTTGGTTTCTTGGATGTCGATGATTTCGGTGTATGTTTGTAGGGGTGATGTTGTTTGTGGTCTGGATCTTTTTGAGGGAATGAGGAGGGAGTTGGAGCCGAATTCGGTGACGATAATGGTGATGGTGCAAGCGTGCTGTGCGACTGGAAATTTGAGTCTGGGAAGGTAGCTTCAGAGTCGTGTTTAAGAATGGTTTGTTGTTTGATATAGGTCTGCAGAATTCATTGTTGCGAATGTATACTTGTCTAGGCAGGGAAGATGAAGTTGGAGTTTTTTGTTCTCTGAAGTTGACCGCAAGAATGTTGTTTCTTGGAATGTTTTTATATCCTTTTATTCCTCTCGAGGGGATTTTGTGAAAGTTGTGGATATCTTCAACAAAATCATGGGTGAAGTTCTACTCAGCGTTGAGACACTAACCATACTTGTATCAGCAACCGCTACACCTGATTCCGAGCATCTGATCCTAATCTACATTCTCTAGCAATTAAAAGTGGCCTTTATGATGGTATTCTTCAGACTTCCTTTTTGGATATGTACGCCAAGTTTGGGGAGTTGGAAAATTCAACTAGGTTGTTTAAAGAAATCCCTCGTAAAAGCATCATCACCTGGGGAGCTATGATGTCTAGTTATTCAGAATGGACATTTTGATGGGGCGGTCGAGATCTTCAACCAAATGCAAGCTGCTGGCTTGAAACCCAGTGTTGGAATTTTAAAACACTTAATTGATGCATACACCCATTTGGGTGCTCTGCAATTAGGGAAAGCAATACATTGTTACCTTATCCAACTCAACGGATTGGAGATCTATAATACGCAGTTAGGAACATCTATCCTTAACATGTATGTAAGATGTGGAAGCATGGTTTCTGCTATAAAATGTTTTGATTTAATCTTAATCAAAGATGTTGTGGCATGGATTTCCAATTGAAGGATATGGTGCTCATGGACTAGGTTTCGACGCCCTCAATCTGTTCCTTCAAATGATGAGAGAAGAAGTGACCCCAAATAATGTCACTTTCTTAAGTCTGTTATCTGCTTGCAGCCACTCTGGCCTTGTAAGCGAGGGCTGTCAAATCTTTTATTCAATGAGGTCAAGATTCAACATCAAGCCCGAATTAGAACACTATACTTGTCTTATTGATCTTTTGAGTAGATCAACAAGAGTAAGGGAGGCCTTTTCAATTATATTGAGAATGACAAATTTTCATGATGGCAGGATATGGGGTGCTCTTATGGGGGCGTCCTGAGTGTATGGAGACAATAAAATCGCTAACTATGCTGCACACAGGCTTCTTGAATTAGAACCTGATAATGTAGGCTATTATACTTTGTTGAGCAATGCACAGGCTATTGTTGGGCAGTGGCATGAAGTTGAAAAATTACGAAGTGTTGTGAATGAGAAAGATCTTGCCAAGAAACCGGGTTGGAGCTTCATTGGGTTAAAAGGAATAATTCATGGATTTGTTTCAGGAGATAGATCACACGATAAGACCAAGGAGATTTATGATTTATTGGTATATCTTAATAGGATAAAATAGCATAGGATATCTGTTTATCTGAGTAACAATAATCGGTCAAGGAGGCGTTCTATGAAACTTGGAATTCTTTTGGCATCTTTATGCTCCCCAGATGAAACACGAGCATATTGGTTAACCTGCCATGCGACAATAGCATGTCATGAAATCATTTGAAATGATTGAAAGACCAGTTGGGAGCGAGCATTTGGACTATGAAAGAAATCAGAAGAATAAATATTCTTTGAAGTTTGAAGCATGAACAGATTGAAGGGAGAAACCTAATTAGTTTTGATGGTCAGGTAATGCTTTTCATTCTCTCTAAATTGTGGTTTACGGTCATTGTGTTTCATGTATTCTCCAGTAATGTGAATCATCTATTAACTTGCAAATGCATCATACTAGTTTTTCATGCAAAAATCATGTATACTGTTCCCTCAAATCGCCCCCTGCAACTGATCTGACAGGTTCCTTATTTCGTGGCTGTATCTATAATATGAAAATGTTTCGAAGAAGATCAAGTTTTTCGGGCGGTAGGTCTTTCTTGGGAAAGTTAATACCTTGGATCGTATTCAAAGGATGTGGAGTTTTTGCATGGGTCCGCAGTGGTGTGTTCTCTGTAAGAGTGCCTCGGAGAACCTTGATCATTTACTGTGGACTTGTCAGTTTGTTCAGGATCTTTGGCATTGTTTCTTTTTGTGCTTTGGTATTTCTTGGGTCCGTGCCAGGAATTGTAGGGCTATGATGGAGGAGGTGCTTTTATTCCCCCCTTTTCAGGATAAGGGTCGTTTTTTGTGGCAGACTTGCTTTCTAGCTATGTTATGGGGTATTTGGCTCGAGAGGAATCATAGAGTGTTTAAGGGGTGGAAAAATTTGTGGATTATGTTTGGACATTGTTAGATTTAACACTTCGTTATGGGGCTCGGTTTCTCATCTCTTTTGTAATTATTCACTTGGCCCATCTCTTTTGTAATTATTCACTTGGCCTTATTCTTTTGGATTGGAGCCCTTTTCTTTAGGGGGCTTCCTCTTGCTGGGCTGTTTTTTGTATGCCCTTTTTAAGCTTTTTGGTGTATATTTTGTATCCTTTTCATTTTTCTCAATGAAAGTATGGTTTCGTATAAAAAAAAAATGAAAATGTTCAGAGAAATGTGTTAAAATTTGAATTTGGAACTGCAAACCATGTTTAGCAGACAAAGAATCCCTTTAAATCATAATGTAGGTTTATTTAAAGAACAATCAACCTGATTATGGTTTCACATCCATGCTTTGGCAGCTAAATTTCCTTTCTGCATGAGCTGTACATGTAAAAGAGC

mRNA sequence

ATGCAAGCTGCTGGCTTGAAACCCAGTGTTGGAATTTTAAAACACTTAATTGATGCATACACCCATTTGGGTGCTCTGCAATTAGGGAAAGCAATACATTGTTACCTTATCCAACTCAACGGATTGGAGATCTATAATACGCAGTTAGGAACATCTATCCTTAACATGTATGTAAGATGTGGAAGCATGGTTTCTGCTATAAAATGTTTTGATTTAATCTTAATCAAAGATGTTGTGGCATGGATTTCCAATTGA

Coding sequence (CDS)

ATGCAAGCTGCTGGCTTGAAACCCAGTGTTGGAATTTTAAAACACTTAATTGATGCATACACCCATTTGGGTGCTCTGCAATTAGGGAAAGCAATACATTGTTACCTTATCCAACTCAACGGATTGGAGATCTATAATACGCAGTTAGGAACATCTATCCTTAACATGTATGTAAGATGTGGAAGCATGGTTTCTGCTATAAAATGTTTTGATTTAATCTTAATCAAAGATGTTGTGGCATGGATTTCCAATTGA

Protein sequence

MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRCGSMVSAIKCFDLILIKDVVAWISN

Homology

[Close]

BLAST of MC01g_new0216 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           M  + + P+   L  ++ A  H+GAL  G+ +HCY+I+ N +EI NT  GT+++++YV+C
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK-NSIEI-NTTAGTTLIDLYVKC 356

Query: 61  GSMVSAIKCFDLILIKDVVAW 82
           G +  AI  F+ +  K+V  W
Sbjct: 357 GCLEEAILVFERLHEKNVYTW 375

[Close]

BLAST of MC01g_new0216 vs. ExPASy Swiss-Prot
Match: Q9SV26 (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H65 PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQ AGLKPS   +  L+ A    G L+LGKAIH Y+++ N L  Y+  + T++++MY++ 
Sbjct: 216 MQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILR-NQL-WYDVYVETTLIDMYIKT 275

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 84
           G +  A   FD++  K++VAW S
Sbjct: 276 GYLPYARMVFDMMDAKNIVAWNS 296

[Close]

BLAST of MC01g_new0216 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-07
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           M+ +G +P       L+ A    GA+ LG  +H Y+I   GL++ N +LGT+++N+Y RC
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIIS-EGLDL-NVKLGTALINLYSRC 258

Query: 61  GSMVSAIKCFDLILIKDVVAW 82
           G +  A + FD +   +V AW
Sbjct: 259 GDVGKAREVFDKMKETNVAAW 277

[Close]

BLAST of MC01g_new0216 vs. ExPASy Swiss-Prot
Match: Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-07
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQ   +KP+   + +L+ A T LG+L +G+ +H Y    NG  + +  LGT++++MY +C
Sbjct: 242 MQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDY-AHKNGF-VLDCFLGTALIDMYSKC 301

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 84
           GS+  A K FD++  K +  W S
Sbjct: 302 GSLQDARKVFDVMQGKSLATWNS 322

[Close]

BLAST of MC01g_new0216 vs. ExPASy Swiss-Prot
Match: Q9SZK1 (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 27/79 (34.18%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 3   AAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRCGS 62
           ++G+KP   IL  ++ A   LGA+  G+ +H Y++   G++ ++T +GT+I++MY +CG 
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTA-GIK-WDTHIGTAIVDMYAKCGY 358

Query: 63  MVSAIKCFDLILIKDVVAW 82
           + +A++ F+ I  K+V  W
Sbjct: 359 IETALEIFNGIRSKNVFTW 375

[Close]

BLAST of MC01g_new0216 vs. NCBI nr
Match: XP_022153922.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Momordica charantia])

HSP 1 Score: 159 bits (403), Expect = 7.79e-44
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPSVGILKHLIDAYTHLG LQLGKAIHCYLI+LNGLEIYNTQLGTSILNMYVRC
Sbjct: 329 MQAAGLKPSVGILKHLIDAYTHLGVLQLGKAIHCYLIRLNGLEIYNTQLGTSILNMYVRC 388

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+VSAIKCFDLILIKDVVAW S
Sbjct: 389 GSLVSAIKCFDLILIKDVVAWTS 411

[Close]

BLAST of MC01g_new0216 vs. NCBI nr
Match: XP_022967941.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 137 bits (344), Expect = 1.84e-35
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI+++GLEI NT L TS++NMYVRC
Sbjct: 330 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIHGLEICNTHLETSLMNMYVRC 389

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLI++KDVVAW S
Sbjct: 390 GSIASARKCFDLIIVKDVVAWTS 412

[Close]

BLAST of MC01g_new0216 vs. NCBI nr
Match: KAE8637247.1 (hypothetical protein CSA_007710, partial [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 3.49e-35
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQ AGLKPSVGILKHLIDAY  LGALQLGKAIHC LI++ G  + NT+L TS+LNMYVRC
Sbjct: 109 MQVAGLKPSVGILKHLIDAYAFLGALQLGKAIHCCLIRIYGFVVCNTRLETSVLNMYVRC 168

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLI+IKDVVAW S
Sbjct: 169 GSIASARKCFDLIIIKDVVAWTS 191

[Close]

BLAST of MC01g_new0216 vs. NCBI nr
Match: XP_022932989.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 135 bits (341), Expect = 4.83e-35
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI++ GLEI NT L TS++NMYVRC
Sbjct: 330 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIYGLEICNTHLETSLMNMYVRC 389

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLI++KDVVAW S
Sbjct: 390 GSIASARKCFDLIIVKDVVAWTS 412

[Close]

BLAST of MC01g_new0216 vs. NCBI nr
Match: XP_023526509.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135 bits (341), Expect = 6.51e-35
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI++ GLEI NT L TS++NMYVRC
Sbjct: 394 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIYGLEICNTHLETSLMNMYVRC 453

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLI++KDVVAW S
Sbjct: 454 GSIASARKCFDLIIVKDVVAWTS 476

[Close]

BLAST of MC01g_new0216 vs. ExPASy TrEMBL
Match: A0A6J1DKA1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111021322 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 3.77e-44
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPSVGILKHLIDAYTHLG LQLGKAIHCYLI+LNGLEIYNTQLGTSILNMYVRC
Sbjct: 329 MQAAGLKPSVGILKHLIDAYTHLGVLQLGKAIHCYLIRLNGLEIYNTQLGTSILNMYVRC 388

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+VSAIKCFDLILIKDVVAW S
Sbjct: 389 GSLVSAIKCFDLILIKDVVAWTS 411

[Close]

BLAST of MC01g_new0216 vs. ExPASy TrEMBL
Match: A0A6J1HTH3 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467326 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 8.89e-36
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI+++GLEI NT L TS++NMYVRC
Sbjct: 330 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIHGLEICNTHLETSLMNMYVRC 389

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLI++KDVVAW S
Sbjct: 390 GSIASARKCFDLIIVKDVVAWTS 412

[Close]

BLAST of MC01g_new0216 vs. ExPASy TrEMBL
Match: A0A6J1EYH5 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439622 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 2.34e-35
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI++ GLEI NT L TS++NMYVRC
Sbjct: 330 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIYGLEICNTHLETSLMNMYVRC 389

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLI++KDVVAW S
Sbjct: 390 GSIASARKCFDLIIVKDVVAWTS 412

[Close]

BLAST of MC01g_new0216 vs. ExPASy TrEMBL
Match: A0A1S3C6I7 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497256 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 1.60e-34
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQ AGLKPSVGILKHLIDAY +LGALQLGKAIHC+LI++ GL + NT+L TS+LNMYVRC
Sbjct: 329 MQVAGLKPSVGILKHLIDAYAYLGALQLGKAIHCHLIRIYGLVVCNTRLETSVLNMYVRC 388

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 83
           GS+ SA KCFDLILIKDVVAW S
Sbjct: 389 GSIASARKCFDLILIKDVVAWTS 411

[Close]

BLAST of MC01g_new0216 vs. ExPASy TrEMBL
Match: A0A2I4GJF4 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109008401 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.02e-22
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQ--LNGLEIYNTQLGTSILNMYV 60
           MQAA ++P V IL+ ++DAYTHLGALQLGK +HCY I+  LN  +   T L TSILNMY+
Sbjct: 345 MQAANVEPGVEILRIILDAYTHLGALQLGKTVHCYFIRNLLNSSKKETTHLETSILNMYI 404

Query: 61  RCGSMVSAIKCFDLILIKDVVAW 81
           +CGS+ SA  CFD IL+KD+V W
Sbjct: 405 KCGSISSARVCFDDILVKDLVTW 427

[Close]

BLAST of MC01g_new0216 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           M  + + P+   L  ++ A  H+GAL  G+ +HCY+I+ N +EI NT  GT+++++YV+C
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK-NSIEI-NTTAGTTLIDLYVKC 356

Query: 61  GSMVSAIKCFDLILIKDVVAW 82
           G +  AI  F+ +  K+V  W
Sbjct: 357 GCLEEAILVFERLHEKNVYTW 375

[Close]

BLAST of MC01g_new0216 vs. TAIR 10
Match: AT4G01030.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQ AGLKPS   +  L+ A    G L+LGKAIH Y+++ N L  Y+  + T++++MY++ 
Sbjct: 216 MQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILR-NQL-WYDVYVETTLIDMYIKT 275

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 84
           G +  A   FD++  K++VAW S
Sbjct: 276 GYLPYARMVFDMMDAKNIVAWNS 296

[Close]

BLAST of MC01g_new0216 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           M+ +G +P       L+ A    GA+ LG  +H Y+I   GL++ N +LGT+++N+Y RC
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIIS-EGLDL-NVKLGTALINLYSRC 258

Query: 61  GSMVSAIKCFDLILIKDVVAW 82
           G +  A + FD +   +V AW
Sbjct: 259 GDVGKAREVFDKMKETNVAAW 277

[Close]

BLAST of MC01g_new0216 vs. TAIR 10
Match: AT3G26630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-08
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRC 60
           MQ   +KP+   + +L+ A T LG+L +G+ +H Y    NG  + +  LGT++++MY +C
Sbjct: 242 MQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDY-AHKNGF-VLDCFLGTALIDMYSKC 301

Query: 61  GSMVSAIKCFDLILIKDVVAWIS 84
           GS+  A K FD++  K +  W S
Sbjct: 302 GSLQDARKVFDVMQGKSLATWNS 322

[Close]

BLAST of MC01g_new0216 vs. TAIR 10
Match: AT4G38010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08
Identity = 27/79 (34.18%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 3   AAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYVRCGS 62
           ++G+KP   IL  ++ A   LGA+  G+ +H Y++   G++ ++T +GT+I++MY +CG 
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTA-GIK-WDTHIGTAIVDMYAKCGY 358

Query: 63  MVSAIKCFDLILIKDVVAW 82
           + +A++ F+ I  K+V  W
Sbjct: 359 IETALEIFNGIRSKNVFTW 375

The following BLAST results are available for this feature:

BLAST of MC01g_new0216 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX45	3.7e-09	37.04	Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX...	[more]
Q9SV26	1.4e-08	40.96	Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidop...	[more]
P93011	2.7e-07	35.80	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX...	[more]
Q38959	5.9e-07	36.14	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop...	[more]
Q9SZK1	1.3e-06	34.18	Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC01g_new0216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153922.1	7.79e-44	95.18	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Momor...	[more]
XP_022967941.1	1.84e-35	78.31	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucur...	[more]
KAE8637247.1	3.49e-35	77.11	hypothetical protein CSA_007710, partial [Cucumis sativus]	[more]
XP_022932989.1	4.83e-35	78.31	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucur...	[more]
XP_023526509.1	6.51e-35	78.31	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucur...	[more]

BLAST of MC01g_new0216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKA1	3.77e-44	95.18	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Mom...	[more]
A0A6J1HTH3	8.89e-36	78.31	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cuc...	[more]
A0A6J1EYH5	2.34e-35	78.31	pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cuc...	[more]
A0A1S3C6I7	1.60e-34	79.52	pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Cucumis ...	[more]
A0A2I4GJF4	2.02e-22	60.24	pentatricopeptide repeat-containing protein DOT4, chloroplastic-like OS=Juglans ...	[more]

BLAST of MC01g_new0216 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50270.1	2.6e-10	37.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G01030.1	1.0e-09	40.96	pentatricopeptide (PPR) repeat-containing protein	[more]
AT2G33760.1	1.9e-08	35.80	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G26630.1	4.2e-08	36.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G38010.1	9.4e-08	34.18	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..83 e-value: 2.6E-6 score: 29.1
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..83
None	No IPR available	PANTHER	PTHR47928:SF75	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0216.1	MC01g_new0216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding