MC01g_new0206 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0206
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 7538879 .. 7541104 (+)
RNA-Seq Expression	MC01g_new0206
Synteny	MC01g_new0206

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTATTTAAAACCTTTTCAAGCTTAGGTGAGAAGAGAAACTATTTTCAAAACTGTGGTTGTATAAATTTGCCTAAGCGGCAACAGAATCTTAATTTCAACCTACAATGGCCGGAAAATTCAAACCTTCTTGGATTTCCCATCGGCGCCGATAATCTCCGAACTCTGAACCCCAAAATTAAGGCTGTAATTTTGGGGGCTAGGTTAGGTTTTTTTTTTCCAGCTTTCTTAACTTCAATCTCTGCGGCTTTAATTTCTCGCTCTTTGAATCTGATTTTGCCTAATGTTTCTGCGTTCTTCTCTAGGTTAGAATTTAGATTTTGCTATCTATCTTCATCTCGTTTAACTAATTTAGGGCTCAATCCGTTTGATCTTCGCTGAAATTGTTCTTTATTTGCTGTTTCTGCTGTTTCTCTTCTATACGTTAATGATCAATAATCTAGGGCTCTGCGATAAAGATCAATAACAACATCATAATTGCTCTTTTCCCACATCCCACACAATTATTTTGGAACGTGTTCTGTTAATAAGTTTCATTGAGTAACATTGTTCGTTTTAGCCTTAAATTGCATTCTTGTTTCTGAAAGTAAAGTTCAAATCAGAATGATTGAGGGAGAAATTGATCATTTGCAGCTACTGAGTGGTGTGCCACACAAACACCTGTTGTGAAAATATGAATACATATTAAATCTCTGCAACTATCCACCCACTGGAATCTCTCCGCACAGCCTATTGTAGCTCACATTCAAGTATTGGAAATTCAGTTTTGTTATCTCCCCTGGAATGCCTCCAAATATCTTGTTATGGTTAAGATCCAGCGAAGTCAGGCTCTGGGTAAACACAATATTTGATAAGTTGAACTCCAACAGATTCCTTTATAAGTCAATGATCTGGATTGTCCTGTTCTCACCAAATATCATGGATGCATTGCCTTCGAGTTTGTTTTGGGACAAATCGATTACGGTGAAGTTCAGTCTGGACAAAGAGGGTGGGATTTTCCCAGAAAGTTGGTTGTGGGAAAGGTAAAGGGAAGGAGCCTGATCTCCAGGTAAGTACCCGAATGAGTTCGGGATTTGTCCTGTTAACTTGTTTCTGTCCAACTGGAGAGCGCCGAGGTTGGGGAGTTTCGCCAGCGATCTTGGGATGGTTCCGGTTAGATTGTTGAAGGACAGGCTGAGATGGGTGAGATTGCTGAGATTGCTGAGGAAGTCCGGGACCAAACCAGAAATGTTGGTCCAGTTAATCCAAAAAAACTTGAGGTGGTGAAGCTTTGCCATGCCTGGTTGGATGGGACCAGTCAGATTGGAGAGCTTGTGGAGCATGAGTGTTTCCAGGAACAGAAGGTCGCCGATCTCCGGTGGGATTTGGCCCGAGAGTTCGCTGGAGACGATCGTAAGAGAGATAACACGGTGGGAAGCCCGATCGCACTCGATGCAGTACCACTCGCAGCAGTCAGTTTCCAGGTGCCATGAAGAGAGAACGTAGGGATCATTGAATGCTTTCTTGATTTTGAGTAGGACCTTCTTGTCATCTGGGTGGCAGAGCTCTGAAAGAACAAAGTTGAAAAGGAGGAAGAAGAAGAAGAGAGGCAGCCATGGGAGCTTGAGATTAGTAACGGGAAGAGCCATGGATTTCAGTGAGACACAAAGATTTATGGATTGAAAGCTGAATACTGTAATGAGCTTATTCATGAGGATATTAATAGATTGGTAAACTCAAAGAATGAAGATATGGTTGGTTTTAATTAGTGGGGTGTAGAGATTTTTATGAAGGTGGGGACTCGGAAACTCGGGCCATTCTCATTAGAGGTAGCAAAGTCAATAGCTACAGTTGTAGTGTGATGGATTTTCTGCATACAACTTGCAGAAGAGAAGAAACTGCACTTTTTTTTTTTTTTATAACCTGAAATCTATGCGGTGTGACTTCTCCAGTTGGATCCTTAGAATTAGGGTCTGTCTACGGCCACTCAACACTGTAATTGACGTTGCGGGACTCATCTCCGAATGGAGGTGGGTGAGGGGGCGGGGCAAGCCTTGACCATGCATGCTAGAGGAAAAACCGGGGAGGGTATCCCCATTCGGCCACAAATCCACTACGCCACCAGATTTGAACTCGTTATATATTTTGAGAGTACGAAACCTAAAATAGATAGAAGTTAGGCAAGGGGCTTTGCATGGGATCTTCGAAGAAAATATTTTTTAAATAAAAATACATTTCTTACTAGCA

mRNA sequence

ATGGGTGAGATTGCTGAGATTGCTGAGGAAGTCCGGGACCAAACCAGAAATGTTGGTCCAGTTAATCCAAAAAAACTTGAGGTGGTGAAGCTTTGCCATGCCTGGTTGGATGGGACCAGTCAGATTGGAGAGCTTGTGGAGCATGAGTGTTTCCAGGAACAGAAGGTCGCCGATCTCCGGTGGGATTTGGCCCGAGAGTTCGCTGGAGACGATCGTAAGAGAGATAACACGGTGGGAAGCCCGATCGCACTCGATGCAGTACCACTCGCAGCAGTCAGTTTCCAGGTGCCATGA

Coding sequence (CDS)

ATGGGTGAGATTGCTGAGATTGCTGAGGAAGTCCGGGACCAAACCAGAAATGTTGGTCCAGTTAATCCAAAAAAACTTGAGGTGGTGAAGCTTTGCCATGCCTGGTTGGATGGGACCAGTCAGATTGGAGAGCTTGTGGAGCATGAGTGTTTCCAGGAACAGAAGGTCGCCGATCTCCGGTGGGATTTGGCCCGAGAGTTCGCTGGAGACGATCGTAAGAGAGATAACACGGTGGGAAGCCCGATCGCACTCGATGCAGTACCACTCGCAGCAGTCAGTTTCCAGGTGCCATGA

Protein sequence

MGEIAEIAEEVRDQTRNVGPVNPKKLEVVKLCHAWLDGTSQIGELVEHECFQEQKVADLRWDLAREFAGDDRKRDNTVGSPIALDAVPLAAVSFQVP

Homology

[Close]

BLAST of MC01g_new0206 vs. NCBI nr
Match: DAD30142.1 (TPA_asm: hypothetical protein HUJ06_031610 [Nelumbo nucifera])

HSP 1 Score: 67.4 bits (163), Expect = 8.30e-12
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 3   EIAEIAEEVRDQTRNVGPVNPKKLEVVKLCHAWLDGTSQIGELVEHECFQEQKVADLRWD 62
           ++ E+AEE+RD      PV  K++EV K      DGT ++G+ +E E F+  KV D  W+
Sbjct: 10  QVLELAEELRDGAGERNPVETKQIEVPKFGDGVGDGTVELGDFIEGEGFKIGKVTDGGWN 69

Query: 63  LAREFAGDDRKRDNTVGSPIALDAVPLAAVSFQVP 97
           L  +   ++ +  N+VG  +A D VP+  + F +P
Sbjct: 70  LTGDVGSEEGELGNSVGLRVADDVVPITGIDFGIP 104

[Close]

BLAST of MC01g_new0206 vs. NCBI nr
Match: DAD24830.1 (TPA_asm: hypothetical protein HUJ06_026294 [Nelumbo nucifera])

HSP 1 Score: 66.2 bits (160), Expect = 3.13e-11
Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 3   EIAEIAEEVRDQTRNVGPVNPKKLEVVKLCHAWLDGTSQIGELVEHECFQEQKVADLRWD 62
           ++ E+A E RD      P+  K+ EV K      DGT ++G+ +E E F+  KV D  W+
Sbjct: 10  QVLELAGEFRDGAGERNPIETKQFEVPKFGDGVGDGTVELGDFIEGEGFEIGKVTDGGWN 69

Query: 63  LAREFAGDDRKRDNTVGSPIALDAVPLAAVSFQVP 97
           LA +   ++ +  N++G  +A D VP+ A+ F +P
Sbjct: 70  LAGDVGSEEGELGNSIGLRVANDVVPITAIDFGIP 104

[Close]

BLAST of MC01g_new0206 vs. NCBI nr
Match: DAD43782.1 (TPA_asm: hypothetical protein HUJ06_002012 [Nelumbo nucifera])

HSP 1 Score: 65.1 bits (157), Expect = 5.25e-11
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 3   EIAEIAEEVRDQTRNVGPVNPKKLEVVKLCHAWLDGTSQIGELVEHECFQEQKVADLRWD 62
           ++ E+AEE RD  R   P+  K+ EV        DGT ++G+ +E E F+  KV +  W+
Sbjct: 10  QVLELAEEFRDGARERNPIETKQFEVPMFGDGEGDGTIELGDFIEGEGFEIGKVTNGGWN 69

Query: 63  LAREFAGDDRKRDNTVGSPIALDAVPLAAVSFQV 96
           LA +   ++ +  N+VG  +A D VP+ A+ F +
Sbjct: 70  LAGDVGSEEGELGNSVGLRVADDVVPITAIDFGI 103

[Close]

BLAST of MC01g_new0206 vs. NCBI nr
Match: DAD29915.1 (TPA_asm: hypothetical protein HUJ06_031383 [Nelumbo nucifera])

HSP 1 Score: 63.9 bits (154), Expect = 5.92e-10
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 3   EIAEIAEEVRDQTRNVGPVNPKKLEVVKLCHAWLDGTSQIGELVEHECFQEQKVADLRWD 62
           ++ E+AEE RD      PV  K+ EV K      DGT ++G+ ++ E F+  KV D  W+
Sbjct: 57  QVLELAEEFRDGAGEWSPVETKQFEVPKFGDGVGDGTIELGDFIKGEGFKIGKVTDGGWN 116

Query: 63  LAREFAGDDRKRDNTVGSPIALDAVPLAAVSFQVP 97
           LA +   ++ +  N+V   +A D VP+ A++F +P
Sbjct: 117 LAGDVGLEEGELGNSVSLRVADDVVPITAINFGIP 151

[Close]

BLAST of MC01g_new0206 vs. ExPASy TrEMBL
Match: A0A2N9F0J9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8206 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.06e-08
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 40  SQIGELVEHECFQEQKVADLRWDLAREFAGDDRKRDNTVGSPIALDAVPLAAV 92
           S++GEL E +  +E+KV DL WDLAR+ AG+D +  + VG   A DA+P+AAV
Sbjct: 79  SKVGELAELDGLEERKVTDLGWDLARKVAGEDGEGIDVVGGGAACDAIPVAAV 131

The following BLAST results are available for this feature:

BLAST of MC01g_new0206 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0206 vs. NCBI nr


Match Name	E-value	Identity	Description
DAD30142.1	8.30e-12	34.74	TPA_asm: hypothetical protein HUJ06_031610 [Nelumbo nucifera]	[more]
DAD24830.1	3.13e-11	33.68	TPA_asm: hypothetical protein HUJ06_026294 [Nelumbo nucifera]	[more]
DAD43782.1	5.25e-11	34.04	TPA_asm: hypothetical protein HUJ06_002012 [Nelumbo nucifera]	[more]
DAD29915.1	5.92e-10	34.74	TPA_asm: hypothetical protein HUJ06_031383 [Nelumbo nucifera]	[more]

BLAST of MC01g_new0206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9F0J9	7.06e-08	50.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8206 PE=4 SV=1	[more]

BLAST of MC01g_new0206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0206.1	MC01g_new0206.1	mRNA