MC01g_new0123 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0123
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionlysine-specific demethylase JMJ25 isoform X5
LocationMC01: 4572762 .. 4572995 (+)
RNA-Seq ExpressionMC01g_new0123
SyntenyMC01g_new0123
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACAAGGGTAGTGAAACTGAGTTGGAGGAGAACATCGATGAGGAAATGACGAGGCAATTGCCCAATAGACTAATAGCAATTTCTTCTTCTCCATCTCTATTACAGTATAATTTAGCAATGAAGGTTCTTCTTGCGGATTCAAAATTGGGGCAGAATCAAGGCCGATTCAGCAAAGGCGATTTCGGTCCAAGAATGTCATTATTCTTCCACTTGGCTACTTGCAGGTAA

mRNA sequence

ATGAAGAACAAGGGTAGTGAAACTGAGTTGGAGGAGAACATCGATGAGGAAATGACGAGGCAATTGCCCAATAGACTAATAGCAATTTCTTCTTCTCCATCTCTATTACAGTATAATTTAGCAATGAAGGTTCTTCTTGCGGATTCAAAATTGGGGCAGAATCAAGGCCGATTCAGCAAAGGCGATTTCGGTCCAAGAATGTCATTATTCTTCCACTTGGCTACTTGCAGGTAA

Coding sequence (CDS)

ATGAAGAACAAGGGTAGTGAAACTGAGTTGGAGGAGAACATCGATGAGGAAATGACGAGGCAATTGCCCAATAGACTAATAGCAATTTCTTCTTCTCCATCTCTATTACAGTATAATTTAGCAATGAAGGTTCTTCTTGCGGATTCAAAATTGGGGCAGAATCAAGGCCGATTCAGCAAAGGCGATTTCGGTCCAAGAATGTCATTATTCTTCCACTTGGCTACTTGCAGGTAA

Protein sequence

MKNKGSETELEENIDEEMTRQLPNRLIAISSSPSLLQYNLAMKVLLADSKLGQNQGRFSKGDFGPRMSLFFHLATCR
Homology
[Close]
BLAST of MC01g_new0123 vs. NCBI nr
Match: XP_023544615.1 (lysine-specific demethylase JMJ25 isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.57e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 39 NLAMKVLLADSKLGQNQGRFSKGDFGPRMSLFFHLATCR 77
          NLAMK+L A+S LGQNQGRFS GDFGPRMS+FF L TCR
Sbjct: 14 NLAMKLLPAESSLGQNQGRFSNGDFGPRMSIFFQLVTCR 52

[Close]
BLAST of MC01g_new0123 vs. NCBI nr
Match: XP_022978354.1 (lysine-specific demethylase JMJ25 isoform X5 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.57e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 39 NLAMKVLLADSKLGQNQGRFSKGDFGPRMSLFFHLATCR 77
          NLAMK+L A+S LGQNQGRFS GDFGPRMS+FF L TCR
Sbjct: 14 NLAMKLLPAESSLGQNQGRFSNGDFGPRMSIFFQLVTCR 52

[Close]
BLAST of MC01g_new0123 vs. NCBI nr
Match: XP_022950669.1 (lysine-specific demethylase JMJ25 isoform X5 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 2.93e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 39 NLAMKVLLADSKLGQNQGRFSKGDFGPRMSLFFHLATCR 77
          NLAMK+L A+S LGQNQGRFS GDFGPRMS+FF  ATCR
Sbjct: 14 NLAMKLLPAESSLGQNQGRFSNGDFGPRMSIFFQWATCR 52

[Close]
BLAST of MC01g_new0123 vs. NCBI nr
Match: XP_022142227.1 (lysine-specific demethylase JMJ25 isoform X2 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.35e-07
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MKNKGSETELEENIDEEMTRQLPNRLIAISSSPSLLQ 37
           MKNKG+ETELEEN DEEMTRQLPN L+AIS SPS LQ
Sbjct: 143 MKNKGNETELEENSDEEMTRQLPNGLMAISPSPSPLQ 179

[Close]
BLAST of MC01g_new0123 vs. NCBI nr
Match: XP_022142226.1 (lysine-specific demethylase JMJ25 isoform X1 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.36e-07
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MKNKGSETELEENIDEEMTRQLPNRLIAISSSPSLLQ 37
           MKNKG+ETELEEN DEEMTRQLPN L+AIS SPS LQ
Sbjct: 143 MKNKGNETELEENSDEEMTRQLPNGLMAISPSPSPLQ 179

[Close]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match: A0A6J1ITV2 (lysine-specific demethylase JMJ25 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111478370 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.60e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 39 NLAMKVLLADSKLGQNQGRFSKGDFGPRMSLFFHLATCR 77
          NLAMK+L A+S LGQNQGRFS GDFGPRMS+FF L TCR
Sbjct: 14 NLAMKLLPAESSLGQNQGRFSNGDFGPRMSIFFQLVTCR 52

[Close]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match: A0A6J1GGI5 (lysine-specific demethylase JMJ25 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111453694 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.42e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 39 NLAMKVLLADSKLGQNQGRFSKGDFGPRMSLFFHLATCR 77
          NLAMK+L A+S LGQNQGRFS GDFGPRMS+FF  ATCR
Sbjct: 14 NLAMKLLPAESSLGQNQGRFSNGDFGPRMSIFFQWATCR 52

[Close]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match: A0A6J1CM61 (lysine-specific demethylase JMJ25 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012394 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.56e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MKNKGSETELEENIDEEMTRQLPNRLIAISSSPSLLQ 37
           MKNKG+ETELEEN DEEMTRQLPN L+AIS SPS LQ
Sbjct: 143 MKNKGNETELEENSDEEMTRQLPNGLMAISPSPSPLQ 179

[Close]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match: A0A6J1CLK8 (lysine-specific demethylase JMJ25 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012394 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.56e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MKNKGSETELEENIDEEMTRQLPNRLIAISSSPSLLQ 37
           MKNKG+ETELEEN DEEMTRQLPN L+AIS SPS LQ
Sbjct: 143 MKNKGNETELEENSDEEMTRQLPNGLMAISPSPSPLQ 179

[Close]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match: A0A1S3B0M7 (lysine-specific demethylase JMJ25 OS=Cucumis melo OX=3656 GN=LOC103484564 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.15e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   MKNKGSETELEENIDEEMTRQLPNRLIAISSSPSLLQ 37
           MKN G+E ELEEN D+EMTRQLPN L+AIS SPS LQ
Sbjct: 144 MKNSGNEIELEENSDKEMTRQLPNGLMAISPSPSPLQ 180

The following BLAST results are available for this feature:
BLAST of MC01g_new0123 vs.
Match NameE-valueIdentityDescription
BLAST of MC01g_new0123 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023544615.11.57e-1179.49lysine-specific demethylase JMJ25 isoform X5 [Cucurbita pepo subsp. pepo][more]
XP_022978354.11.57e-1179.49lysine-specific demethylase JMJ25 isoform X5 [Cucurbita maxima][more]
XP_022950669.12.93e-1179.49lysine-specific demethylase JMJ25 isoform X5 [Cucurbita moschata][more]
XP_022142227.11.35e-0783.78lysine-specific demethylase JMJ25 isoform X2 [Momordica charantia][more]
XP_022142226.11.36e-0783.78lysine-specific demethylase JMJ25 isoform X1 [Momordica charantia][more]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ITV27.60e-1279.49lysine-specific demethylase JMJ25 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1GGI51.42e-1179.49lysine-specific demethylase JMJ25 isoform X5 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1CM616.56e-0883.78lysine-specific demethylase JMJ25 isoform X2 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1CLK86.56e-0883.78lysine-specific demethylase JMJ25 isoform X1 OS=Momordica charantia OX=3673 GN=L... [more]
A0A1S3B0M77.15e-0675.68lysine-specific demethylase JMJ25 OS=Cucumis melo OX=3656 GN=LOC103484564 PE=4 S... [more]
BLAST of MC01g_new0123 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0123.1MC01g_new0123.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033169 histone H3-K9 demethylation
biological_process GO:0032259 methylation
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0000785 chromatin
cellular_component GO:0000118 histone deacetylase complex
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0032454 histone H3-methyl-lysine-9 demethylase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003712 transcription coregulator activity