MC01g_new0082 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g_new0082
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCytochrom_C_asm domain-containing protein
LocationMC01: 3227986 .. 3228685 (+)
RNA-Seq ExpressionMC01g_new0082
SyntenyMC01g_new0082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTGTAAGTCTCGAGGCTAAAAGTTTGAGCCTTGCCTCGAGGCTAACCTCAAGGTGTAAGCCTCAAAAGCCTTTTAAAACATGGAATAGGTGGGATAGATATTTTTTAATCTTCACATCTAAGAATTTACCAAAACAAGTATTTCTAAATTTTCTTAGATGTTTTTCTAAGAGAACGTCTTTAATGGTCTCCAACACTTCTAATTTTGAATATATTTGAAGTTTCATGCTATTTAACTACTTGTCCATTAGAAGTAACAATAGAGCATCCTTAATATAATTTAAATCTCCATGTAATTATATACCTATAATATATTTTAAAATATAACATAGTCCATAGATTATATAATACATACCTCAAGGCCTGTTATATCCAATAAAATTTCCTTTATCATATTTTCCTTCTTTTCTTCTATCTTGACAACGTCCAAATTTTTTAACCTTTTGTAATTCAATAAAGATTAGATAATCAATATCCCTAAAAAATATACTTCTACCTAAAAAAGCCATAATCACATTTTCTTTGATTATTTCATCTTCCTTCTTCTTCGCCTTAAATTTTGACATATTCTTTTCGTTTTGTACTCAGAGCCAACAATTGGCTGCCGGATTTCGTCCCGCAACTAGAAGAAGATCGCTTCGGGGGTCATAGTGGTGTGGCTGAATGTAGAGCAGTCCGCCCCTACAGCATTTGA

mRNA sequence

ATGAGAGGTGTAAGTCTCGAGGCTAAAAGTTTGAGCCTTGCCTCGAGGCTAACCTCAAGGTGTAAGCCTCAAAAGCCTTTTAAAACATGGAATAGAGCCAACAATTGGCTGCCGGATTTCGTCCCGCAACTAGAAGAAGATCGCTTCGGGGGTCATAGTGGTGTGGCTGAATGTAGAGCAGTCCGCCCCTACAGCATTTGA

Coding sequence (CDS)

ATGAGAGGTGTAAGTCTCGAGGCTAAAAGTTTGAGCCTTGCCTCGAGGCTAACCTCAAGGTGTAAGCCTCAAAAGCCTTTTAAAACATGGAATAGAGCCAACAATTGGCTGCCGGATTTCGTCCCGCAACTAGAAGAAGATCGCTTCGGGGGTCATAGTGGTGTGGCTGAATGTAGAGCAGTCCGCCCCTACAGCATTTGA

Protein sequence

MRGVSLEAKSLSLASRLTSRCKPQKPFKTWNRANNWLPDFVPQLEEDRFGGHSGVAECRAVRPYSI
Homology
BLAST of MC01g_new0082 vs. NCBI nr
Match: KAG5553333.1 (hypothetical protein RHGRI_011263 [Rhododendron griersonianum])

HSP 1 Score: 56.2 bits (134), Expect = 4.07e-07
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 34  NNWLPDFVPQLEEDRFGGHSGVAECRAVR 62
           NNWL DFVPQL+E R GGH GVAECRAVR
Sbjct: 253 NNWLSDFVPQLDEVRVGGHCGVAECRAVR 281

BLAST of MC01g_new0082 vs. NCBI nr
Match: KAE9445781.1 (hypothetical protein C3L33_22319, partial [Rhododendron williamsianum])

HSP 1 Score: 56.2 bits (134), Expect = 4.08e-07
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 34  NNWLPDFVPQLEEDRFGGHSGVAECRAVR 62
           NNWL DFVPQL+E R GGH GVAECRAVR
Sbjct: 253 NNWLSDFVPQLDEVRVGGHCGVAECRAVR 281

BLAST of MC01g_new0082 vs. NCBI nr
Match: TXG46220.1 (hypothetical protein EZV62_028251 [Acer yangbiense])

HSP 1 Score: 55.8 bits (133), Expect = 5.59e-07
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 10  SLSLASRLTSRCKPQKPFK---TWNRANNWLPDFVPQLEEDRFGGHSGVAECR 59
           S+ L S++  +   ++ +K      R +NWLPDF PQLEEDRFGGHSG+ E R
Sbjct: 530 SMILFSQMKQQASVRRTYKKEMVVARTSNWLPDFAPQLEEDRFGGHSGIKERR 582

BLAST of MC01g_new0082 vs. NCBI nr
Match: GER38289.1 (cytochrome c biogenesis FN [Striga asiatica])

HSP 1 Score: 52.0 bits (123), Expect = 1.28e-05
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 32  RANNWLPDFVPQLEEDRFGGHSGVAE 57
           RA+NWL DFVPQLEED FGGH GVAE
Sbjct: 578 RASNWLSDFVPQLEEDGFGGHCGVAE 603

BLAST of MC01g_new0082 vs. ExPASy TrEMBL
Match: A0A6N2NJ21 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS463790 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.66e-09
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 32  RANNWLPDFVPQLEEDRFGGHSGVAECRAVRP 63
           RA+NWL DF P+LE+DRFGGH GVAECRAVRP
Sbjct: 757 RASNWLLDFDPKLEKDRFGGHYGVAECRAVRP 788

BLAST of MC01g_new0082 vs. ExPASy TrEMBL
Match: A0A6N2K5R7 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS28816 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.67e-09
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 32  RANNWLPDFVPQLEEDRFGGHSGVAECRAVRP 63
           RA+NWL DF P+LE+DRFGGH GVAECRAVRP
Sbjct: 832 RASNWLLDFDPKLEKDRFGGHYGVAECRAVRP 863

BLAST of MC01g_new0082 vs. ExPASy TrEMBL
Match: A0A6A4KQR8 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22319 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.98e-07
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 34  NNWLPDFVPQLEEDRFGGHSGVAECRAVR 62
           NNWL DFVPQL+E R GGH GVAECRAVR
Sbjct: 253 NNWLSDFVPQLDEVRVGGHCGVAECRAVR 281

BLAST of MC01g_new0082 vs. ExPASy TrEMBL
Match: A0A5C7GNR1 (Cytochrom_C_asm domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_028251 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.71e-07
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 10  SLSLASRLTSRCKPQKPFK---TWNRANNWLPDFVPQLEEDRFGGHSGVAECR 59
           S+ L S++  +   ++ +K      R +NWLPDF PQLEEDRFGGHSG+ E R
Sbjct: 530 SMILFSQMKQQASVRRTYKKEMVVARTSNWLPDFAPQLEEDRFGGHSGIKERR 582

BLAST of MC01g_new0082 vs. ExPASy TrEMBL
Match: A0A5C7GQ89 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027804 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.68e-07
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 33  ANNWLPDFVPQLEEDRFGGHSGVAECR 59
           A+NWLPDF PQLEEDRFGGHSG+ E R
Sbjct: 244 ASNWLPDFAPQLEEDRFGGHSGIKERR 270

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG5553333.14.07e-0782.76hypothetical protein RHGRI_011263 [Rhododendron griersonianum][more]
KAE9445781.14.08e-0782.76hypothetical protein C3L33_22319, partial [Rhododendron williamsianum][more]
TXG46220.15.59e-0749.06hypothetical protein EZV62_028251 [Acer yangbiense][more]
GER38289.11.28e-0584.62cytochrome c biogenesis FN [Striga asiatica][more]
Match NameE-valueIdentityDescription
A0A6N2NJ214.66e-0981.25Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO... [more]
A0A6N2K5R74.67e-0981.25Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO... [more]
A0A6A4KQR81.98e-0782.76Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A5C7GNR12.71e-0749.06Cytochrom_C_asm domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62... [more]
A0A5C7GQ896.68e-0781.48Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027804 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g_new0082.1MC01g_new0082.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity