MC01g1683 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g1683
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionbasic helix-loop-helix (bHLH) DNA-binding superfamily protein
LocationMC01: 20974686 .. 20974772 (+)
RNA-Seq ExpressionMC01g1683
SyntenyMC01g1683
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGAAGAACCTCCATGCGGAGAGACGACGGAGGCAGAAGCTTAGTGATAGGCTATTATTATTACGTGCTACTGTCCCAATCATCACA

mRNA sequence

TCGAAGAACCTCCATGCGGAGAGACGACGGAGGCAGAAGCTTAGTGATAGGCTATTATTATTACGTGCTACTGTCCCAATCATCACA

Coding sequence (CDS)

TCGAAGAACCTCCATGCGGAGAGACGACGGAGGCAGAAGCTTAGTGATAGGCTATTATTATTACGTGCTACTGTCCCAATCATCACA

Protein sequence

SKNLHAERRRRQKLSDRLLLLRATVPIIT
Homology
BLAST of MC01g1683 vs. NCBI nr
Match: XP_022930020.1 (transcription factor DYT1 [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 1.55e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLLLLRATVPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLLLRATVPIIT 66

BLAST of MC01g1683 vs. NCBI nr
Match: KDP20835.1 (hypothetical protein JCGZ_21306 [Jatropha curcas])

HSP 1 Score: 50.4 bits (119), Expect = 5.38e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLALRAIVPIIT 66

BLAST of MC01g1683 vs. NCBI nr
Match: XP_030973145.1 (transcription factor DYT1 [Quercus lobata])

HSP 1 Score: 50.4 bits (119), Expect = 5.91e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLALRALVPIIT 66

BLAST of MC01g1683 vs. NCBI nr
Match: KAF3948530.1 (hypothetical protein CMV_025485 [Castanea mollissima])

HSP 1 Score: 50.4 bits (119), Expect = 5.91e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLALRALVPIIT 66

BLAST of MC01g1683 vs. NCBI nr
Match: ART33342.1 (dysfunctional tapetum 1 [Tapiscia sinensis])

HSP 1 Score: 50.4 bits (119), Expect = 6.00e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 40 SKNLHAERRRRQKLSDRLLALRALVPIIT 68

BLAST of MC01g1683 vs. ExPASy TrEMBL
Match: A0A6J1EVV3 (transcription factor DYT1 OS=Cucurbita moschata OX=3662 GN=LOC111436461 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.52e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLLLLRATVPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLLLRATVPIIT 66

BLAST of MC01g1683 vs. ExPASy TrEMBL
Match: A0A067JLF3 (BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_21306 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.60e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLALRAIVPIIT 66

BLAST of MC01g1683 vs. ExPASy TrEMBL
Match: A0A7N2LV27 (BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.86e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 38 SKNLHAERRRRQKLSDRLLALRALVPIIT 66

BLAST of MC01g1683 vs. ExPASy TrEMBL
Match: A0A1Y0B6D2 (Dysfunctional tapetum 1 OS=Tapiscia sinensis OX=112844 GN=DYT1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.90e-06
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LRA VPIIT
Sbjct: 40 SKNLHAERRRRQKLSDRLLALRALVPIIT 68

BLAST of MC01g1683 vs. ExPASy TrEMBL
Match: A0A6P5X4W9 (transcription factor DYT1-like OS=Durio zibethinus OX=66656 GN=LOC111280289 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.60e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 1  SKNLHAERRRRQKLSDRLLLLRATVPIIT 29
          SKNLHAERRRRQKLSDRLL LR+ VPIIT
Sbjct: 40 SKNLHAERRRRQKLSDRLLTLRSVVPIIT 68

BLAST of MC01g1683 vs. TAIR 10
Match: AT5G10570.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 38.9 bits (89), Expect = 8.2e-04
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 1   SKNLHAERRRRQKLSDRLLLLRATVPIIT 30
           SKNL AERRRR++L+DRL LLR+ VP IT
Sbjct: 150 SKNLMAERRRRKRLNDRLSLLRSIVPKIT 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022930020.11.55e-07100.00transcription factor DYT1 [Cucurbita moschata][more]
KDP20835.15.38e-0693.10hypothetical protein JCGZ_21306 [Jatropha curcas][more]
XP_030973145.15.91e-0693.10transcription factor DYT1 [Quercus lobata][more]
KAF3948530.15.91e-0693.10hypothetical protein CMV_025485 [Castanea mollissima][more]
ART33342.16.00e-0693.10dysfunctional tapetum 1 [Tapiscia sinensis][more]
Match NameE-valueIdentityDescription
A0A6J1EVV37.52e-08100.00transcription factor DYT1 OS=Cucurbita moschata OX=3662 GN=LOC111436461 PE=4 SV=... [more]
A0A067JLF32.60e-0693.10BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_21306 PE=4 S... [more]
A0A7N2LV272.86e-0693.10BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A1Y0B6D22.90e-0693.10Dysfunctional tapetum 1 OS=Tapiscia sinensis OX=112844 GN=DYT1 PE=2 SV=1[more]
A0A6P5X4W96.60e-0689.66transcription factor DYT1-like OS=Durio zibethinus OX=66656 GN=LOC111280289 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G10570.18.2e-0472.41basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 1..29
score: 8.606665
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 3..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g1683.1MC01g1683.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity