MC01g1560 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1560
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S24
Location	MC01: 19781204 .. 19781462 (-)
RNA-Seq Expression	MC01g1560
Synteny	MC01g1560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAATGTGATCTTTGTTTTCAAGATTCTGACTCACTTCGGTCAGGCAAAATCTAGTGGGGTTTGACTTGATATATGGTGATTACATTGAGAATGCAATGAAGTACAGACTCAAATACATGCTAATAATCAGGAATGAACTTGCCACTAAGGTAGGAAAACCAAGAAAGCAGTTGAAGGAAAGAAAGAACAGGGCCAGCAAAATCTGTGGAATTGAAAGACCAAGGCAACAGATTCTTACCAATGCAATGAAGAAGAAG

mRNA sequence

CCAAATGTGATCTTTGTTTTCAAGATTCTGACTCACTTCGGTCAGGCAAAATCTGGGTTTGACTTGATATATGGTGATTACATTGAGAATGCAATGAAGTACAGACTCAAATACATGCTAATAATCAGGAATGAACTTGCCACTAAGGTAGGAAAACCAAGAAAGCAGTTGAAGGAAAGAAAGAACAGGGCCAGCAAAATCTGTGGAATTGAAAGACCAAGGCAACAGATTCTTACCAATGCAATGAAGAAGAAG

Coding sequence (CDS)

CCAAATGTGATCTTTGTTTTCAAGATTCTGACTCACTTCGGTCAGGCAAAATCTGGGTTTGACTTGATATATGGTGATTACATTGAGAATGCAATGAAGTACAGACTCAAATACATGCTAATAATCAGGAATGAACTTGCCACTAAGGTAGGAAAACCAAGAAAGCAGTTGAAGGAAAGAAAGAACAGGGCCAGCAAAATCTGTGGAATTGAAAGACCAAGGCAACAGATTCTTACCAATGCAATGAAGAAGAAG

Protein sequence

PNVIFVFKILTHFGQAKSGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

Homology

[Close]

BLAST of MC01g1560 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  K SGF LIY D +E+A K+  KY L IRN L TK+ K RKQ+KE
Sbjct: 54  PNAIFVFKFRTHFGGGKSSGFGLIY-DTVESAKKFEPKYRL-IRNGLDTKIEKSRKQIKE 113

Query: 61  RKNRASKICGIERPR 75
           RKNRA KI G+++ +
Sbjct: 114 RKNRAKKIRGVKKTK 126

[Close]

BLAST of MC01g1560 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-13
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IF FK  THFG  K SG+ LIY D +ENA K+  KY L IRN L TK+ K RKQ+KE
Sbjct: 54  PNAIFCFKFRTHFGGGKSSGYGLIY-DTVENAKKFEPKYRL-IRNGLDTKIEKSRKQIKE 113

Query: 61  RKNRASKICGIERPR 75
           RKNRA KI G+++ +
Sbjct: 114 RKNRAKKIRGVKKTK 126

[Close]

BLAST of MC01g1560 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 4.3e-05
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           P+VIFVF   THFG  K +GF +IY D ++ A K   K+ L  R+ L  K    RKQ KE
Sbjct: 52  PDVIFVFGFRTHFGGGKTTGFGMIY-DSLDYAKKNEPKHRL-ARHGLYEKKKTSRKQRKE 111

Query: 61  RKNRASKICG 70
           RKNR  K+ G
Sbjct: 112 RKNRMKKVRG 119

[Close]

BLAST of MC01g1560 vs. ExPASy Swiss-Prot
Match: P62847 (40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.3e-05
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           P+VIFVF   THFG  K +GF +IY D ++ A K   K+ L  R+ L  K    RKQ KE
Sbjct: 52  PDVIFVFGFRTHFGGGKTTGFGMIY-DSLDYAKKNEPKHRL-ARHGLYEKKKTSRKQRKE 111

Query: 61  RKNRASKICG 70
           RKNR  K+ G
Sbjct: 112 RKNRMKKVRG 119

[Close]

BLAST of MC01g1560 vs. ExPASy Swiss-Prot
Match: Q4R5H5 (40S ribosomal protein S24 OS=Macaca fascicularis OX=9541 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.3e-05
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           P+VIFVF   THFG  K +GF +IY D ++ A K   K+ L  R+ L  K    RKQ KE
Sbjct: 52  PDVIFVFGFRTHFGGGKTTGFGMIY-DSLDYAKKNEPKHRL-ARHGLYEKKKTSRKQRKE 111

Query: 61  RKNRASKICG 70
           RKNR  K+ G
Sbjct: 112 RKNRMKKVRG 119

[Close]

BLAST of MC01g1560 vs. NCBI nr
Match: EPS72548.1 (hypothetical protein M569_02208, partial [Genlisea aurea])

HSP 1 Score: 86.7 bits (213), Expect = 1.01e-19
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 30  PNAIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 89

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +      A KKK
Sbjct: 90  RKNRAKKIRGVKKTKASEAAKAGKKK 113

[Close]

BLAST of MC01g1560 vs. NCBI nr
Match: EPS57470.1 (hypothetical protein M569_17346 [Genlisea aurea])

HSP 1 Score: 86.7 bits (213), Expect = 1.91e-19
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 54  PNAIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +      A KKK
Sbjct: 114 RKNRAKKIRGVKKTKASEAAKAGKKK 137

[Close]

BLAST of MC01g1560 vs. NCBI nr
Match: KAF7142846.1 (hypothetical protein RHSIM_Rhsim05G0160100 [Rhododendron simsii])

HSP 1 Score: 85.1 bits (209), Expect = 7.68e-19
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQ+KE
Sbjct: 54  PNAIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQMKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +      A KKK
Sbjct: 114 RKNRAKKIRGVKKTKAGDAAKAGKKK 137

[Close]

BLAST of MC01g1560 vs. NCBI nr
Match: XP_015875449.1 (40S ribosomal protein S24-1 [Ziziphus jujuba])

HSP 1 Score: 85.1 bits (209), Expect = 7.68e-19
Identity = 53/86 (61.63%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 54  PNTIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +        KKK
Sbjct: 114 RKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]

BLAST of MC01g1560 vs. NCBI nr
Match: KAG5549426.1 (hypothetical protein RHGRI_014687 [Rhododendron griersonianum])

HSP 1 Score: 85.1 bits (209), Expect = 7.68e-19
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQ+KE
Sbjct: 54  PNAIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQMKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +      A KKK
Sbjct: 114 RKNRAKKIRGVKKTKAGDAAKAGKKK 137

[Close]

BLAST of MC01g1560 vs. ExPASy TrEMBL
Match: S8E9K2 (40S ribosomal protein S24 (Fragment) OS=Genlisea aurea OX=192259 GN=M569_02208 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.89e-20
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 30  PNAIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 89

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +      A KKK
Sbjct: 90  RKNRAKKIRGVKKTKASEAAKAGKKK 113

[Close]

BLAST of MC01g1560 vs. ExPASy TrEMBL
Match: S8BSC9 (40S ribosomal protein S24 OS=Genlisea aurea OX=192259 GN=M569_17346 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.23e-20
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 54  PNAIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +      A KKK
Sbjct: 114 RKNRAKKIRGVKKTKASEAAKAGKKK 137

[Close]

BLAST of MC01g1560 vs. ExPASy TrEMBL
Match: A0A2P2KRF0 (40S ribosomal protein S24 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.96e-19
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 32  PNTIFVFKFRTHFGGGKSTGFGLIY-DNVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 91

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA K+ G+++ +      A KKK
Sbjct: 92  RKNRAKKVRGVKKTKAGDAGKAGKKK 115

[Close]

BLAST of MC01g1560 vs. ExPASy TrEMBL
Match: A0A6P3ZCU6 (40S ribosomal protein S24 OS=Ziziphus jujuba OX=326968 GN=LOC107412236 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.72e-19
Identity = 53/86 (61.63%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKE
Sbjct: 54  PNTIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQLKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA KI G+++ +        KKK
Sbjct: 114 RKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]

BLAST of MC01g1560 vs. ExPASy TrEMBL
Match: A0A6I9QUI8 (40S ribosomal protein S24 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105040491 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.26e-19
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQ+KE
Sbjct: 54  PNTIFVFKFRTHFGGGKSTGFGLIY-DSVENAKKYEPKYRLI-RNGLATKVEKSRKQMKE 113

Query: 61  RKNRASKICGIERPRQQILTNAMKKK 85
           RKNRA K+ G+++ +      A KKK
Sbjct: 114 RKNRAKKVRGVKKAKAGDAAKAGKKK 137

[Close]

BLAST of MC01g1560 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IFVFK  THFG  K SGF LIY D +E+A K+  KY L IRN L TK+ K RKQ+KE
Sbjct: 54  PNAIFVFKFRTHFGGGKSSGFGLIY-DTVESAKKFEPKYRL-IRNGLDTKIEKSRKQIKE 113

Query: 61  RKNRASKICGIERPR 75
           RKNRA KI G+++ +
Sbjct: 114 RKNRAKKIRGVKKTK 126

[Close]

BLAST of MC01g1560 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-14
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKE 60
           PN IF FK  THFG  K SG+ LIY D +ENA K+  KY L IRN L TK+ K RKQ+KE
Sbjct: 54  PNAIFCFKFRTHFGGGKSSGYGLIY-DTVENAKKFEPKYRL-IRNGLDTKIEKSRKQIKE 113

Query: 61  RKNRASKICGIERPR 75
           RKNRA KI G+++ +
Sbjct: 114 RKNRAKKIRGVKKTK 126

The following BLAST results are available for this feature:

BLAST of MC01g1560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	1.9e-13	60.00	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	4.3e-13	58.67	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q56JU9	4.3e-05	48.57	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
P62847	4.3e-05	48.57	40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1	[more]
Q4R5H5	4.3e-05	48.57	40S ribosomal protein S24 OS=Macaca fascicularis OX=9541 GN=RPS24 PE=2 SV=1	[more]

BLAST of MC01g1560 vs. NCBI nr


Match Name	E-value	Identity	Description
EPS72548.1	1.01e-19	62.79	hypothetical protein M569_02208, partial [Genlisea aurea]	[more]
EPS57470.1	1.91e-19	62.79	hypothetical protein M569_17346 [Genlisea aurea]	[more]
KAF7142846.1	7.68e-19	61.63	hypothetical protein RHSIM_Rhsim05G0160100 [Rhododendron simsii]	[more]
XP_015875449.1	7.68e-19	61.63	40S ribosomal protein S24-1 [Ziziphus jujuba]	[more]
KAG5549426.1	7.68e-19	61.63	hypothetical protein RHGRI_014687 [Rhododendron griersonianum]	[more]

BLAST of MC01g1560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
S8E9K2	4.89e-20	62.79	40S ribosomal protein S24 (Fragment) OS=Genlisea aurea OX=192259 GN=M569_02208 P...	[more]
S8BSC9	9.23e-20	62.79	40S ribosomal protein S24 OS=Genlisea aurea OX=192259 GN=M569_17346 PE=3 SV=1	[more]
A0A2P2KRF0	2.96e-19	61.63	40S ribosomal protein S24 OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
A0A6P3ZCU6	3.72e-19	61.63	40S ribosomal protein S24 OS=Ziziphus jujuba OX=326968 GN=LOC107412236 PE=3 SV=1	[more]
A0A6I9QUI8	5.26e-19	60.47	40S ribosomal protein S24 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105040...	[more]

BLAST of MC01g1560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.4e-14	60.00	Ribosomal protein S24e family protein	[more]
AT5G28060.1	3.0e-14	58.67	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..77 e-value: 3.0E-12 score: 48.3
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..76
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 1..49 e-value: 4.0E-6 score: 26.7
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g1560.1	MC01g1560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome