MC01g1542 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1542
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 19649628 .. 19649864 (+)
RNA-Seq Expression	MC01g1542
Synteny	MC01g1542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGCGATTGCGATTGGCCGGATCAAGAAGACGAAGAAGGGGAGATCCTTCAGCTTCCGGAGGCTAAGAGAGTCGTGGAAGTGGAAATTCCTTCGGGATTTCAAGAGGAAGAGATTGAATCTCCACATTGGTTTCTTGGACGCCATCATCTTCCGAATCGCCTCCCTGTTTGAGGCCATTGCGTTGGTAGGTATCGCCGGCTTCTTCTTCCTCTGTTGTGGCTGCCACTTC

mRNA sequence

ATGGATGATGCGATTGCGATTGGCCGGATCAAGAAGACGAAGAAGGGGAGATCCTTCAGCTTCCGGAGGCTAAGAGAGTCGTGGAAGTGGAAATTCCTTCGGGATTTCAAGAGGAAGAGATTGAATCTCCACATTGGTTTCTTGGACGCCATCATCTTCCGAATCGCCTCCCTGTTTGAGGCCATTGCGTTGGTAGGTATCGCCGGCTTCTTCTTCCTCTGTTGTGGCTGCCACTTC

Coding sequence (CDS)

ATGGATGATGCGATTGCGATTGGCCGGATCAAGAAGACGAAGAAGGGGAGATCCTTCAGCTTCCGGAGGCTAAGAGAGTCGTGGAAGTGGAAATTCCTTCGGGATTTCAAGAGGAAGAGATTGAATCTCCACATTGGTTTCTTGGACGCCATCATCTTCCGAATCGCCTCCCTGTTTGAGGCCATTGCGTTGGTAGGTATCGCCGGCTTCTTCTTCCTCTGTTGTGGCTGCCACTTC

Protein sequence

MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGCHF

Homology

[Close]

BLAST of MC01g1542 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (297), Expect = 4.69e-33
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKRKRLNLHIGFLDAIIFRIASLFE 60
          MDDAI     KKTKK R+FS +RLR+SWKWKFL+DFK KRLNLHIGFLDAIIFRIASLFE
Sbjct: 1  MDDAID---RKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFE 60

Query: 61 AIALVGIAGFFFLCCG-CHF 79
          AIAL+GIAGFFFLCCG C F
Sbjct: 61 AIALIGIAGFFFLCCGGCRF 77

[Close]

BLAST of MC01g1542 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (265), Expect = 6.11e-28
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKRKRLNLHIGFLDAIIFRIASLFE 60
          MDDAI     KKTKK R+FS +RLR+SWKWKFL+DFK KRLNLHIGFLDAIIFRIASLFE
Sbjct: 1  MDDAID---RKKTKKRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFE 60

Query: 61 AIALVGIAGFF 71
          AIAL+GIAGFF
Sbjct: 61 AIALIGIAGFF 68

[Close]

BLAST of MC01g1542 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 8.87e-27
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKRKRLNLHIGFLDAIIFRIASLFE 60
          MDDAI   + K  KK R FSF+RLR+SWKWKFL++FK KRLNL +GF DAIIFRI SLFE
Sbjct: 1  MDDAIDRKKTKTMKK-RVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFE 60

Query: 61 AIALVGIAGFFFLCCG-CHF 79
           +ALVGIA FFFLCCG C F
Sbjct: 61 TVALVGIASFFFLCCGGCRF 79

[Close]

BLAST of MC01g1542 vs. NCBI nr
Match: XP_023929751.1 (uncharacterized protein LOC112041078 [Quercus suber])

HSP 1 Score: 77.8 bits (190), Expect = 8.35e-17
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 14 KKGRSFSFRRLR--ESWKWKFLRD-FKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R   FRRLR   +W+WKFL   FK KRLNLH+ F+D ++FRI S+FEAI LV    F
Sbjct: 4  KKNRWIFFRRLRMQTAWRWKFLGSAFKWKRLNLHLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 74 FFLCCGCHF 79
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

[Close]

BLAST of MC01g1542 vs. NCBI nr
Match: XP_035544743.1 (uncharacterized protein LOC108990492 [Juglans regia])

HSP 1 Score: 74.3 bits (181), Expect = 1.96e-15
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 14 KKGRSFSFRRLR-ESWKWKFL--RDFKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R  SF++LR ++W+WKF     F+ KRLNL + F+D ++FRIASLFEAI LV    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 74 FFLCCGCHF 79
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

[Close]

BLAST of MC01g1542 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 4.29e-27
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MDDAIAIGRIKKTKKGRSFSFRRLRESWKWKFLRDFKRKRLNLHIGFLDAIIFRIASLFE 60
          MDDAI   + K  KK R FSF+RLR+SWKWKFL++FK KRLNL +GF DAIIFRI SLFE
Sbjct: 1  MDDAIDRKKTKTMKK-RVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFE 60

Query: 61 AIALVGIAGFFFLCCG-CHF 79
           +ALVGIA FFFLCCG C F
Sbjct: 61 TVALVGIASFFFLCCGGCRF 79

[Close]

BLAST of MC01g1542 vs. ExPASy TrEMBL
Match: A0A6P9EL64 (uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.48e-16
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 14 KKGRSFSFRRLR-ESWKWKFL--RDFKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R  SF++LR ++W+WKF     F+ KRLNL + F+D ++FRIASLFEAI LV    F
Sbjct: 4  KKNRWISFKKLRGQNWRWKFFFGSAFRWKRLNLKLSFVDDLLFRIASLFEAIVLVARLCF 63

Query: 74 FFLCCGCHF 79
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

[Close]

BLAST of MC01g1542 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.91e-15
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 14 KKGRSFSFRRLR--ESWKWKFLRD-FKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          KK R   F+RLR   +W+WKFL   FK KRLNL + F+D ++FRI S+FEAI LV    F
Sbjct: 4  KKNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCF 63

Query: 74 FFLCCGCHF 79
          F+LCCGCHF
Sbjct: 64 FYLCCGCHF 72

[Close]

BLAST of MC01g1542 vs. ExPASy TrEMBL
Match: A0A6J1B6L1 (uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC110424571 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.53e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 21 FRRL--RESWKWKFLRD-FKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGC 79
          F+RL  +ESW+WKFL   FK KRLN+ + F+D ++FRIAS+ EAI LV    FF+LCCGC
Sbjct: 10 FKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDDVLFRIASVLEAIFLVATLCFFYLCCGC 69

[Close]

BLAST of MC01g1542 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.78e-14
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 21 FRRL-RESWKWKFLRD-FKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGFFFLCCGCH 79
          F+RL +ESW+WKFL   FK KRLN+ + F D ++FRIAS+ EAI LV    FF+LCCGCH
Sbjct: 17 FKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAIYLVATLCFFYLCCGCH 76

[Close]

BLAST of MC01g1542 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 14 KKGRSFSFRRLRESWKWKFL---RDFKRKRLNLHIGFLDAIIFRIASLFEAIALVGIAGF 73
          +KG+   ++  +E  + KFL      K KRLNL + FL+ + +RI S+ EA+ LV    F
Sbjct: 3  RKGKLSIWKTTKERTRLKFLGLGGGLKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAF 62

Query: 74 FFLCCGCHF 80
          FFLCCGC F
Sbjct: 63 FFLCCGCKF 71

The following BLAST results are available for this feature:

BLAST of MC01g1542 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g1542 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034699.1	4.69e-33	81.25	hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581417.1	6.11e-28	81.69	hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49382.1	8.87e-27	71.25	hypothetical protein Csa_004198 [Cucumis sativus]	[more]
XP_023929751.1	8.35e-17	60.87	uncharacterized protein LOC112041078 [Quercus suber]	[more]
XP_035544743.1	1.96e-15	57.97	uncharacterized protein LOC108990492 [Juglans regia]	[more]

BLAST of MC01g1542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX9	4.29e-27	71.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1	[more]
A0A6P9EL64	9.48e-16	57.97	uncharacterized protein LOC108990492 OS=Juglans regia OX=51240 GN=LOC108990492 P...	[more]
A0A7N2LSF8	1.91e-15	57.97	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J1B6L1	1.53e-14	59.68	uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]
A0A1R3FVP9	1.78e-14	60.66	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1	[more]

BLAST of MC01g1542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46295.1	1.3e-06	43.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726	TRANSMEMBRANE PROTEIN	coord: 14..79
None	No IPR available	PANTHER	PTHR33726:SF3	TRANSMEMBRANE PROTEIN	coord: 14..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g1542.1	MC01g1542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane