MC01g1410 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1410
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	MC01: 18718494 .. 18719180 (-)
RNA-Seq Expression	MC01g1410
Synteny	MC01g1410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTACAGGGGGAACAGATCGAGAAAACTACAAAGGTTGCTTTGATTGTAACATATGCTTAGACTTTGCCCATGAGCCAGTGGTCACTCTGTGCGGCCACTTGTACTGCTGGCCTTGCATCTATAAATGGCTCCACGTCCAGAGTGCCTCTCTTGCCACTGATGAGCACCCGCAATGCCCTGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAATCTGCCGAGGAAGTCGAGCCGGAGGCCAAAGCAATCCATCGAGACATTGATATACCTCCAAGACCATCAGCTTGTGGTAACCATATGCTTGCTACTCCCAGCATAGACCACCAACAGCAGCAGCTTCCATATCGAAATCCTTACCAGCGACCAAACCATGACCCTCTTCTTTTCAGCAATTATGAAGAAGACTCATCAGCAGCTCCATTGCTGAACCTTGCAAGAACTTCATTTAGCAATTTTCACCATCCAGTGGTCGGGATGATCGGCGACTTGATGTATACGAGGGTGTTCGGGAACTCGGAAAACTTGTATTCTTATCGAAACTCTTACCATGTAACAGGGAGCAGCAGTAACCGGTTGAGAAGACAGGAAATGCAGGCATCCAAGTCATTGAACAGAATCTCCATATTCCTCCTCTGCTGTGTCATTCTGTGTGTTCTCGTCTTC

mRNA sequence

AGTACAGGGGGAACAGATCGAGAAAACTACAAAGGTTGCTTTGATTGTAACATATGCTTAGACTTTGCCCATGAGCCAGTGGTCACTCTGTGCGGCCACTTGTACTGCTGGCCTTGCATCTATAAATGGCTCCACGTCCAGAGTGCCTCTCTTGCCACTGATGAGCACCCGCAATGCCCTGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAATCTGCCGAGGAAGTCGAGCCGGAGGCCAAAGCAATCCATCGAGACATTGATATACCTCCAAGACCATCAGCTTGTGGTAACCATATGCTTGCTACTCCCAGCATAGACCACCAACAGCAGCAGCTTCCATATCGAAATCCTTACCAGCGACCAAACCATGACCCTCTTCTTTTCAGCAATTATGAAGAAGACTCATCAGCAGCTCCATTGCTGAACCTTGCAAGAACTTCATTTAGCAATTTTCACCATCCAGTGGTCGGGATGATCGGCGACTTGATGTATACGAGGGTGTTCGGGAACTCGGAAAACTTGTATTCTTATCGAAACTCTTACCATGTAACAGGGAGCAGCAGTAACCGGTTGAGAAGACAGGAAATGCAGGCATCCAAGTCATTGAACAGAATCTCCATATTCCTCCTCTGCTGTGTCATTCTGTGTGTTCTCGTCTTC

Coding sequence (CDS)

AGTACAGGGGGAACAGATCGAGAAAACTACAAAGGTTGCTTTGATTGTAACATATGCTTAGACTTTGCCCATGAGCCAGTGGTCACTCTGTGCGGCCACTTGTACTGCTGGCCTTGCATCTATAAATGGCTCCACGTCCAGAGTGCCTCTCTTGCCACTGATGAGCACCCGCAATGCCCTGTTTGCAAGGCTGATATTTCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAATCTGCCGAGGAAGTCGAGCCGGAGGCCAAAGCAATCCATCGAGACATTGATATACCTCCAAGACCATCAGCTTGTGGTAACCATATGCTTGCTACTCCCAGCATAGACCACCAACAGCAGCAGCTTCCATATCGAAATCCTTACCAGCGACCAAACCATGACCCTCTTCTTTTCAGCAATTATGAAGAAGACTCATCAGCAGCTCCATTGCTGAACCTTGCAAGAACTTCATTTAGCAATTTTCACCATCCAGTGGTCGGGATGATCGGCGACTTGATGTATACGAGGGTGTTCGGGAACTCGGAAAACTTGTATTCTTATCGAAACTCTTACCATGTAACAGGGAGCAGCAGTAACCGGTTGAGAAGACAGGAAATGCAGGCATCCAAGTCATTGAACAGAATCTCCATATTCCTCCTCTGCTGTGTCATTCTGTGTGTTCTCGTCTTC

Protein sequence

STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF

Homology

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BLAST of MC01g1410 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-48
Identity = 105/227 (46.26%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 8   ENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASL--ATDEHPQCPVCKAD 67
           EN  G FDCNICLD  HEPV+TLCGHLYCWPCIYKW++ QS S   +  + PQCPVCKA+
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 68  ISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSA--CGNHMLATPSIDHQQQQLPY 127
           +S  T++PLYGRG  + +   E KA +  I IP RP +  CG H L  P+ D    QL  
Sbjct: 93  VSEKTLIPLYGRGGQSTK-PSEGKAPNLGIVIPQRPPSPRCGGHFL-LPTTDSNPSQLLQ 152

Query: 128 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSE-N 187
           R  YQ+ +        Y+    ++P+L+    + +   H    MIG++ Y R+FGNS   
Sbjct: 153 RRGYQQQSQTRQ--PAYQGSYMSSPMLSPGGATANMLQH---SMIGEVAYARIFGNSSTT 212

Query: 188 LYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           +Y+Y NSY++  SSS R+RRQ  QA +SL RI  FL CC + C+++F
Sbjct: 213 MYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

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BLAST of MC01g1410 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-46
Identity = 102/225 (45.33%), Postives = 135/225 (60.00%), Query Frame = 0


Query: 9   NYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHP-QCPVCKADIS 68
           N  GCFDCNICLD AH+PVVTLCGHL+CWPCIYKWLHVQ +S++ D+H   CPVCK++I+
Sbjct: 37  NESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNIT 96

Query: 69  HTTMVPLYGRGQSAEEVEPEAK---AIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPYR 128
            T++VPLYGRG S+      +K   A+  DI   P PSA  N + +  S++   Q     
Sbjct: 97  ITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLS 156

Query: 129 NPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENLY 188
             +    + P  F+  E         +LA     +F +PV+GM GDL+YTR+FG   N  
Sbjct: 157 PSFHNHQYSPRGFTTTES-------TDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTI 216

Query: 189 SYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           +           S R+    MQ  KSLNR+SIF LCC+ILC+L+F
Sbjct: 217 A-------QPYQSQRM----MQREKSLNRVSIFFLCCIILCLLLF 243

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BLAST of MC01g1410 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.4e-39
Identity = 90/219 (41.10%), Postives = 130/219 (59.36%), Query Frame = 0


Query: 14  FDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATD--EHPQCPVCKADISHTTM 73
           FDCNICLD   EPVVTLCGHL+CWPCI+KWL VQS S + +   H QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 74  VPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPYRNPYQRPN 133
           VPLYGRG+   + E +         +P RP          P    +    PY +   R +
Sbjct: 106 VPLYGRGRCTTQEEGKN-------SVPKRP--------VGPVYRLEMPNSPYASTDLRLS 165

Query: 134 HDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS-ENLYSYRNSY 193
                 S  E     + +++    S+S    PV+ M+G+++ TR+FG    + ++Y ++Y
Sbjct: 166 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 225

Query: 194 HVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           ++ G+S  R+RR+ MQA KSL RI  F +CCV+LC+L+F
Sbjct: 226 NLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

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BLAST of MC01g1410 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-28
Identity = 78/228 (34.21%), Postives = 115/228 (50.44%), Query Frame = 0


Query: 12  GCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA-------TDEHPQCPVCKA 71
           G FDCNICLD   +PVVTLCGHL+CWPCI+KW +  + S           E P+CPVCK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 72  DISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSI--DHQQQQLP 131
           D+S  T+VP+YGRGQ         KA     ++P RP+     +        + + Q+  
Sbjct: 77  DVSEATLVPIYGRGQ---------KAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQRYM 136

Query: 132 YRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFG-NSE 191
           YR P                                    PV+G++ +++Y R+FG +S 
Sbjct: 137 YRMP-----------------------------------DPVMGVVCEMVYRRLFGESSS 193

Query: 192 NLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           N+  YR+        + R RR+ MQA +SL+R+ +FLLC + +C+ +F
Sbjct: 197 NMAPYRD-------MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of MC01g1410 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-19
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 1   STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP 60
           S G  D  N    F+CNICLD A + V++LCGHL+CWPC+++WL  +           CP
Sbjct: 26  SNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR------PNRQVCP 85

Query: 61  VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRP 102
           VCKA IS   ++PLYGRG + ++ +P  K        PPRP
Sbjct: 86  VCKAGISRDKVIPLYGRGSTGQQ-DPREKT-------PPRP 112

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BLAST of MC01g1410 vs. NCBI nr
Match: XP_022142014.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022142015.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022142017.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022142018.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 481 bits (1239), Expect = 1.44e-171
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP 60
           STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP
Sbjct: 17  STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP 76

Query: 61  VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQ 120
           VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQ
Sbjct: 77  VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQ 136

Query: 121 LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS 180
           LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS
Sbjct: 137 LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS 196

Query: 181 ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF
Sbjct: 197 ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 245

[Close]

BLAST of MC01g1410 vs. NCBI nr
Match: XP_038881993.1 (E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida] >XP_038881994.1 E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida] >XP_038881995.1 E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida] >XP_038881996.1 E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida] >XP_038881997.1 E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida] >XP_038881998.1 E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida])

HSP 1 Score: 424 bits (1091), Expect = 4.55e-149
Identity = 203/228 (89.04%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 2   TGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPV 61
           TGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPV
Sbjct: 17  TGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPV 76

Query: 62  CKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQL 121
           CKADISHTTMVPLYGRGQ+AEEVEPEAKA+H DI+IPPRPSACGN MLATPSI   QQQL
Sbjct: 77  CKADISHTTMVPLYGRGQTAEEVEPEAKAMHHDINIPPRPSACGNQMLATPSI--HQQQL 136

Query: 122 PYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSE 181
           PYRNPYQ+PNHDPLLF NYEEDS AAPLLNLARTSFS FHHP+VGMIGD ++ RVFGNS+
Sbjct: 137 PYRNPYQQPNHDPLLFGNYEEDS-AAPLLNLARTSFSGFHHPLVGMIGDFVHARVFGNSD 196

Query: 182 NLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           NLYSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 197 NLYSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 241

[Close]

BLAST of MC01g1410 vs. NCBI nr
Match: XP_004134707.1 (E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >XP_031743484.1 E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >XP_031743485.1 E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >XP_031743486.1 E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >XP_031743487.1 E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >XP_031743488.1 E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >KGN49224.1 hypothetical protein Csa_003905 [Cucumis sativus])

HSP 1 Score: 415 bits (1067), Expect = 1.86e-145
Identity = 198/226 (87.61%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 4   GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCK 63
           GT+RENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPVCK
Sbjct: 16  GTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCK 75

Query: 64  ADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPY 123
           ADISHTTMVPLYGRGQ+AEEVEPE KA+H DI+IPPRPSACGN +LATPS    QQQLPY
Sbjct: 76  ADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATPST--HQQQLPY 135

Query: 124 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENL 183
           RNPYQRPNHDPLLF+NYEEDS A+PLLNLARTSFS+FHHPVVGMIGD ++ RVFGNS+NL
Sbjct: 136 RNPYQRPNHDPLLFANYEEDS-ASPLLNLARTSFSSFHHPVVGMIGDFVHARVFGNSDNL 195

Query: 184 YSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           YSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 196 YSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of MC01g1410 vs. NCBI nr
Match: XP_004134706.1 (E3 ubiquitin-protein ligase RMA1H1 isoform X1 [Cucumis sativus] >XP_031743482.1 E3 ubiquitin-protein ligase RMA1H1 isoform X1 [Cucumis sativus] >XP_031743483.1 E3 ubiquitin-protein ligase RMA1H1 isoform X1 [Cucumis sativus])

HSP 1 Score: 415 bits (1067), Expect = 3.68e-145
Identity = 198/226 (87.61%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 4   GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCK 63
           GT+RENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPVCK
Sbjct: 35  GTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCK 94

Query: 64  ADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPY 123
           ADISHTTMVPLYGRGQ+AEEVEPE KA+H DI+IPPRPSACGN +LATPS    QQQLPY
Sbjct: 95  ADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATPST--HQQQLPY 154

Query: 124 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENL 183
           RNPYQRPNHDPLLF+NYEEDS A+PLLNLARTSFS+FHHPVVGMIGD ++ RVFGNS+NL
Sbjct: 155 RNPYQRPNHDPLLFANYEEDS-ASPLLNLARTSFSSFHHPVVGMIGDFVHARVFGNSDNL 214

Query: 184 YSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           YSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 215 YSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 257

[Close]

BLAST of MC01g1410 vs. NCBI nr
Match: XP_008439861.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >KAA0052689.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa] >TYK13135.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 414 bits (1063), Expect = 7.57e-145
Identity = 199/226 (88.05%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 4   GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCK 63
           GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPVCK
Sbjct: 16  GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCK 75

Query: 64  ADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPY 123
           ADISHTTMVPLYGRGQ AEEVE EAKA+HRDI+IPPRPSACGN +LATPS    QQQLPY
Sbjct: 76  ADISHTTMVPLYGRGQMAEEVELEAKAMHRDINIPPRPSACGNQILATPST--HQQQLPY 135

Query: 124 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENL 183
           RNPYQRPNHDPLLF+NYEE S A+PLLNLARTSFS+FHHPVVGMIGD ++ RVFGNS+NL
Sbjct: 136 RNPYQRPNHDPLLFANYEEHS-ASPLLNLARTSFSSFHHPVVGMIGDFVHARVFGNSDNL 195

Query: 184 YSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           YSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 196 YSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of MC01g1410 vs. ExPASy TrEMBL
Match: A0A6J1CKD0 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111012249 PE=4 SV=1)

HSP 1 Score: 481 bits (1239), Expect = 6.98e-172
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP 60
           STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP
Sbjct: 17  STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP 76

Query: 61  VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQ 120
           VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQ
Sbjct: 77  VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQ 136

Query: 121 LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS 180
           LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS
Sbjct: 137 LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS 196

Query: 181 ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF
Sbjct: 197 ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 245

[Close]

BLAST of MC01g1410 vs. ExPASy TrEMBL
Match: A0A0A0KK60 (Rnf5 OS=Cucumis sativus OX=3659 GN=Csa_6G517320 PE=4 SV=1)

HSP 1 Score: 415 bits (1067), Expect = 9.00e-146
Identity = 198/226 (87.61%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 4   GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCK 63
           GT+RENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPVCK
Sbjct: 16  GTERENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCK 75

Query: 64  ADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPY 123
           ADISHTTMVPLYGRGQ+AEEVEPE KA+H DI+IPPRPSACGN +LATPS    QQQLPY
Sbjct: 76  ADISHTTMVPLYGRGQTAEEVEPEDKAMHHDINIPPRPSACGNQILATPST--HQQQLPY 135

Query: 124 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENL 183
           RNPYQRPNHDPLLF+NYEEDS A+PLLNLARTSFS+FHHPVVGMIGD ++ RVFGNS+NL
Sbjct: 136 RNPYQRPNHDPLLFANYEEDS-ASPLLNLARTSFSSFHHPVVGMIGDFVHARVFGNSDNL 195

Query: 184 YSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           YSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 196 YSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of MC01g1410 vs. ExPASy TrEMBL
Match: A0A5A7UGP7 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007450 PE=4 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 3.66e-145
Identity = 199/226 (88.05%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 4   GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCK 63
           GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPVCK
Sbjct: 16  GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCK 75

Query: 64  ADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPY 123
           ADISHTTMVPLYGRGQ AEEVE EAKA+HRDI+IPPRPSACGN +LATPS    QQQLPY
Sbjct: 76  ADISHTTMVPLYGRGQMAEEVELEAKAMHRDINIPPRPSACGNQILATPST--HQQQLPY 135

Query: 124 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENL 183
           RNPYQRPNHDPLLF+NYEE S A+PLLNLARTSFS+FHHPVVGMIGD ++ RVFGNS+NL
Sbjct: 136 RNPYQRPNHDPLLFANYEEHS-ASPLLNLARTSFSSFHHPVVGMIGDFVHARVFGNSDNL 195

Query: 184 YSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           YSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 196 YSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of MC01g1410 vs. ExPASy TrEMBL
Match: A0A1S3AZB8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103484523 PE=4 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 3.66e-145
Identity = 199/226 (88.05%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 4   GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPVCK 63
           GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA DEHPQCPVCK
Sbjct: 16  GTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAIDEHPQCPVCK 75

Query: 64  ADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPY 123
           ADISHTTMVPLYGRGQ AEEVE EAKA+HRDI+IPPRPSACGN +LATPS    QQQLPY
Sbjct: 76  ADISHTTMVPLYGRGQMAEEVELEAKAMHRDINIPPRPSACGNQILATPST--HQQQLPY 135

Query: 124 RNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENL 183
           RNPYQRPNHDPLLF+NYEE S A+PLLNLARTSFS+FHHPVVGMIGD ++ RVFGNS+NL
Sbjct: 136 RNPYQRPNHDPLLFANYEEHS-ASPLLNLARTSFSSFHHPVVGMIGDFVHARVFGNSDNL 195

Query: 184 YSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           YSYRNSY +TGSS NRLRRQEMQ  KSLNRISIFL CCVILCVLVF
Sbjct: 196 YSYRNSYQLTGSSRNRLRRQEMQVDKSLNRISIFLFCCVILCVLVF 238

[Close]

BLAST of MC01g1410 vs. ExPASy TrEMBL
Match: A0A6J1KVR4 (E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496874 PE=4 SV=1)

HSP 1 Score: 404 bits (1039), Expect = 1.92e-141
Identity = 195/229 (85.15%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 2   TGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCPV 61
           TGGTDRE YKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHV+S SLA DEHPQCPV
Sbjct: 17  TGGTDRETYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVKSVSLAIDEHPQCPV 76

Query: 62  CKADISHTTMVPLYGRGQSAEEVEPEAKAIHRD-IDIPPRPSACGNHMLATPSIDHQQQQ 121
           CKADISHTTMVPLYGRGQ AEEV PEA+A+H+D +DIPPRPSACGN +LAT  +   QQQ
Sbjct: 77  CKADISHTTMVPLYGRGQMAEEVGPEAQALHQDNVDIPPRPSACGNQILAT--LSTHQQQ 136

Query: 122 LPYRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS 181
           L YRNPYQRPNHDPLLF NYEEDS A P LNLARTSFS FHHPVVGMIGD MY RVFGNS
Sbjct: 137 LRYRNPYQRPNHDPLLFGNYEEDSPA-PSLNLARTSFSGFHHPVVGMIGDFMYARVFGNS 196

Query: 182 ENLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 229
           +NLYSY+NSYH+TGS  NRLRRQEMQA KSLNRISIFL CCVILCVLVF
Sbjct: 197 DNLYSYQNSYHLTGSRRNRLRRQEMQAEKSLNRISIFLFCCVILCVLVF 242

[Close]

BLAST of MC01g1410 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-47
Identity = 102/225 (45.33%), Postives = 135/225 (60.00%), Query Frame = 0


Query: 9   NYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHP-QCPVCKADIS 68
           N  GCFDCNICLD AH+PVVTLCGHL+CWPCIYKWLHVQ +S++ D+H   CPVCK++I+
Sbjct: 37  NESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNIT 96

Query: 69  HTTMVPLYGRGQSAEEVEPEAK---AIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPYR 128
            T++VPLYGRG S+      +K   A+  DI   P PSA  N + +  S++   Q     
Sbjct: 97  ITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLS 156

Query: 129 NPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNSENLY 188
             +    + P  F+  E         +LA     +F +PV+GM GDL+YTR+FG   N  
Sbjct: 157 PSFHNHQYSPRGFTTTES-------TDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTI 216

Query: 189 SYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           +           S R+    MQ  KSLNR+SIF LCC+ILC+L+F
Sbjct: 217 A-------QPYQSQRM----MQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of MC01g1410 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-40
Identity = 90/219 (41.10%), Postives = 130/219 (59.36%), Query Frame = 0


Query: 14  FDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATD--EHPQCPVCKADISHTTM 73
           FDCNICLD   EPVVTLCGHL+CWPCI+KWL VQS S + +   H QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 74  VPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPYRNPYQRPN 133
           VPLYGRG+   + E +         +P RP          P    +    PY +   R +
Sbjct: 106 VPLYGRGRCTTQEEGKN-------SVPKRP--------VGPVYRLEMPNSPYASTDLRLS 165

Query: 134 HDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS-ENLYSYRNSY 193
                 S  E     + +++    S+S    PV+ M+G+++ TR+FG    + ++Y ++Y
Sbjct: 166 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 225

Query: 194 HVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           ++ G+S  R+RR+ MQA KSL RI  F +CCV+LC+L+F
Sbjct: 226 NLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of MC01g1410 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-40
Identity = 90/219 (41.10%), Postives = 130/219 (59.36%), Query Frame = 0


Query: 14  FDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATD--EHPQCPVCKADISHTTM 73
           FDCNICLD   EPVVTLCGHL+CWPCI+KWL VQS S + +   H QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 74  VPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDHQQQQLPYRNPYQRPN 133
           VPLYGRG+   + E +         +P RP          P    +    PY +   R +
Sbjct: 106 VPLYGRGRCTTQEEGKN-------SVPKRP--------VGPVYRLEMPNSPYASTDLRLS 165

Query: 134 HDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFGNS-ENLYSYRNSY 193
                 S  E     + +++    S+S    PV+ M+G+++ TR+FG    + ++Y ++Y
Sbjct: 166 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 225

Query: 194 HVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           ++ G+S  R+RR+ MQA KSL RI  F +CCV+LC+L+F
Sbjct: 226 NLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of MC01g1410 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-29
Identity = 78/228 (34.21%), Postives = 115/228 (50.44%), Query Frame = 0


Query: 12  GCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLA-------TDEHPQCPVCKA 71
           G FDCNICLD   +PVVTLCGHL+CWPCI+KW +  + S           E P+CPVCK+
Sbjct: 17  GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76

Query: 72  DISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSI--DHQQQQLP 131
           D+S  T+VP+YGRGQ         KA     ++P RP+     +        + + Q+  
Sbjct: 77  DVSEATLVPIYGRGQ---------KAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQRYM 136

Query: 132 YRNPYQRPNHDPLLFSNYEEDSSAAPLLNLARTSFSNFHHPVVGMIGDLMYTRVFG-NSE 191
           YR P                                    PV+G++ +++Y R+FG +S 
Sbjct: 137 YRMP-----------------------------------DPVMGVVCEMVYRRLFGESSS 193

Query: 192 NLYSYRNSYHVTGSSSNRLRRQEMQASKSLNRISIFLLCCVILCVLVF 230
           N+  YR+        + R RR+ MQA +SL+R+ +FLLC + +C+ +F
Sbjct: 197 NMAPYRD-------MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of MC01g1410 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-26
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 1   STGGTDRENYKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLATDEHPQCP 60
           S+G     N    F+CNICLD A +P+VTLCGHL+CWPC+YKWLH+ S S        CP
Sbjct: 8   SSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS------KDCP 67

Query: 61  VCKADISHTTMVPLYGRGQSAEEVEPEAKAIHRDIDIPPRPSACGNHMLATPSIDH 117
           VCKA I    +VPLYGRG+S+   +P +K+I   +++P RPS         P  +H
Sbjct: 68  VCKAVIEEDRLVPLYGRGKSS--ADPRSKSI-PGLEVPNRPSGQRPETAQPPDPNH 114

The following BLAST results are available for this feature:

BLAST of MC01g1410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	1.7e-48	46.26	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
Q8GUK7	2.7e-46	45.33	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
O64425	9.4e-39	41.10	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
P93030	5.7e-28	34.21	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q5ZIR9	2.8e-19	43.56	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]

BLAST of MC01g1410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142014.1	1.44e-171	100.00	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022142015.1 E3...	[more]
XP_038881993.1	4.55e-149	89.04	E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida] >XP_038881994.1 E3 u...	[more]
XP_004134707.1	1.86e-145	87.61	E3 ubiquitin-protein ligase RMA1H1 isoform X2 [Cucumis sativus] >XP_031743484.1 ...	[more]
XP_004134706.1	3.68e-145	87.61	E3 ubiquitin-protein ligase RMA1H1 isoform X1 [Cucumis sativus] >XP_031743482.1 ...	[more]
XP_008439861.1	7.57e-145	88.05	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >KAA0052689.1 ...	[more]

BLAST of MC01g1410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKD0	6.98e-172	100.00	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A0A0KK60	9.00e-146	87.61	Rnf5 OS=Cucumis sativus OX=3659 GN=Csa_6G517320 PE=4 SV=1	[more]
A0A5A7UGP7	3.66e-145	88.05	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3AZB8	3.66e-145	88.05	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103484523 ...	[more]
A0A6J1KVR4	1.92e-141	85.15	E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of MC01g1410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27470.1	1.9e-47	45.33	RING membrane-anchor 3	[more]
AT4G03510.1	6.7e-40	41.10	RING membrane-anchor 1	[more]
AT4G03510.2	6.7e-40	41.10	RING membrane-anchor 1	[more]
AT4G28270.1	4.0e-29	34.21	RING membrane-anchor 2	[more]
AT1G19310.1	5.5e-26	46.55	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 16..62 e-value: 6.7E-9 score: 45.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 16..63 score: 12.592549
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 3..120 e-value: 2.5E-16 score: 61.5
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 16..62 e-value: 3.5E-8 score: 33.2
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..229
None	No IPR available	PANTHER	PTHR12313:SF6	E3 UBIQUITIN-PROTEIN LIGASE RMA3	coord: 2..229
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 14..64 e-value: 2.70427E-25 score: 91.5967
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 10..75
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 31..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g1410.1	MC01g1410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity