MC01g1077 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1077
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	E3 ubiquitin-protein ligase RHA2B-like
Location	MC01: 16163052 .. 16163273 (+)
RNA-Seq Expression	MC01g1077
Synteny	MC01g1077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACCTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACGGAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGGTC

mRNA sequence

TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACCTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACGGAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGGTC

Coding sequence (CDS)

TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACCTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACGGAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGGTC

Protein sequence

LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVV

Homology

[Close]

BLAST of MC01g1077 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-13
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           L ++ N    FS + + + A  C VCLS+ + G++VRKL C H FHK CL+ WL+     
Sbjct: 52  LADQLNLNRLFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFN 111

Query: 61  CPLCRSKVLP 71
           CPLCRS +LP
Sbjct: 112 CPLCRSPLLP 121

[Close]

BLAST of MC01g1077 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-13
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 23  CAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVV 75
           C VCLS+ +EG++VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCV 137

[Close]

BLAST of MC01g1077 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 7   PTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 66
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 67  KVLPDD 73
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of MC01g1077 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPAD---QCAVCLSEFEEGDKVRKLQ-CNHTFHKDCLDNWLKL 60
           LI E  P I+F  +LT+S  D    CAVCL EFE   ++R L+ C H FH+ CLD W+  
Sbjct: 70  LIREILPVIKF-EELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDH 129

Query: 61  CFATCPLCRSKVLPDDV 74
              TCPLCR+  +PD++
Sbjct: 130 DQKTCPLCRTPFVPDEM 145

[Close]

BLAST of MC01g1077 vs. ExPASy Swiss-Prot
Match: Q0VD51 (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-11
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 21  DQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 71
           D CA+CL E+E+GDK+R L C+H +H  C+D WL     TCP+C+ KV+P
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287

[Close]

BLAST of MC01g1077 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia])

HSP 1 Score: 162 bits (409), Expect = 4.15e-49
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDDVV
Sbjct: 113 CPLCRSKVLPDDVV 126

[Close]

BLAST of MC01g1077 vs. NCBI nr
Match: XP_022963436.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_023517189.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7026818.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (399), Expect = 1.38e-47
Identity = 70/74 (94.59%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDD+V
Sbjct: 113 CPLCRSKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. NCBI nr
Match: XP_023003552.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 156 bits (394), Expect = 7.96e-47
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCR KVLPDD+V
Sbjct: 113 CPLCRRKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida])

HSP 1 Score: 155 bits (391), Expect = 2.58e-46
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEE+NPTIRFSNKLTSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEEKNPTIRFSNKLTSSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDD+V
Sbjct: 113 CPLCRSKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 1.07e-44
Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIE++NPTIRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDD+V
Sbjct: 113 CPLCRSKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 2.01e-49
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDDVV
Sbjct: 113 CPLCRSKVLPDDVV 126

[Close]

BLAST of MC01g1077 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 6.68e-48
Identity = 70/74 (94.59%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDD+V
Sbjct: 113 CPLCRSKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. ExPASy TrEMBL
Match: A0A6J1KMW2 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497121 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 3.85e-47
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCR KVLPDD+V
Sbjct: 113 CPLCRRKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 5.20e-45
Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIE++NPTIRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDD+V
Sbjct: 113 CPLCRSKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 5.20e-45
Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           LIE++NPTIRFSNK+T S ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFAT
Sbjct: 53  LIEDKNPTIRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFAT 112

Query: 61  CPLCRSKVLPDDVV 74
           CPLCRSKVLPDD+V
Sbjct: 113 CPLCRSKVLPDDIV 126

[Close]

BLAST of MC01g1077 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-14
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1   LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFAT 60
           L ++ N    FS + + + A  C VCLS+ + G++VRKL C H FHK CL+ WL+     
Sbjct: 52  LADQLNLNRLFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFN 111

Query: 61  CPLCRSKVLP 71
           CPLCRS +LP
Sbjct: 112 CPLCRSPLLP 121

[Close]

BLAST of MC01g1077 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-14
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 23  CAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVV 75
           C VCLS+ +EG++VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCV 137

[Close]

BLAST of MC01g1077 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 7.7e-14
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 7   PTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 66
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 67  KVLPDD 73
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of MC01g1077 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 4   ERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKL-QCNHTFHKDCLDNWLKLCFATCP 63
           E+ P   +S K   SP ++C+VCLSEFEE D+ R L +C H FH DC+D W +   ++CP
Sbjct: 94  EKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFR-SRSSCP 153

Query: 64  LCRSKVLP 71
           LCR+ V P
Sbjct: 154 LCRAPVQP 160

[Close]

BLAST of MC01g1077 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 9   IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 68
           I+   K  S    QC +CL E+EE D +R L C+H FHK C+D WLK     CPLCR  +
Sbjct: 476 IKLYTKSQSEDPSQCYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 535

Query: 69  LPDD 73
              D
Sbjct: 536 CRHD 539

The following BLAST results are available for this feature:

BLAST of MC01g1077 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU51	2.9e-13	45.71	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	6.4e-13	57.69	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q8LPN7	1.1e-12	43.94	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9XF92	1.2e-11	46.75	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q0VD51	2.0e-11	52.00	E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1	[more]

BLAST of MC01g1077 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132528.1	4.15e-49	100.00	E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]	[more]
XP_022963436.1	1.38e-47	94.59	E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_02351...	[more]
XP_023003552.1	7.96e-47	93.24	E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita maxima]	[more]
XP_038883588.1	2.58e-46	94.59	E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]	[more]
KAA0036272.1	1.07e-44	90.54	putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666....	[more]

BLAST of MC01g1077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWI1	2.01e-49	100.00	E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HG49	6.68e-48	94.59	E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KMW2	3.85e-47	93.24	E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7SYH1	5.20e-45	90.54	Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KM08	5.20e-45	90.54	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 P...	[more]

BLAST of MC01g1077 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01150.1	2.0e-14	45.71	RING-H2 finger protein 2B	[more]
AT1G15100.1	4.5e-14	57.69	RING-H2 finger A2A	[more]
AT3G19950.1	7.7e-14	43.94	RING/U-box superfamily protein	[more]
AT3G62690.1	2.2e-13	48.53	AtL5	[more]
AT5G45290.1	2.2e-13	45.31	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 23..64 e-value: 1.2E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 21..65 e-value: 6.6E-14 score: 52.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 23..65 score: 12.725326
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 2..72 e-value: 2.1E-21 score: 76.9
None	No IPR available	PANTHER	PTHR47662:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..74
None	No IPR available	PANTHER	PTHR47662	FAMILY NOT NAMED	coord: 1..74
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 22..65 e-value: 5.34518E-17 score: 65.3257
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 18..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g1077.1	MC01g1077.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane