MC01g0892 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g0892
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 14731184 .. 14731444 (+)
RNA-Seq ExpressionMC01g0892
SyntenyMC01g0892
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGATGAGGACCCCCTCCTTGGTTCTAATCATTATGCTAATGGCCGCCGCCGCCGCACACTCCCTTCTTCTTGTAGATTGCAGACCGCTCCCATCCGAAACAACAGAGCGCCACCGTGCTGATCAAACGCCGCAAACTGCACCATCGCCACCCAGTGATTCTGCCAGCCGTACGACCGAAGACGGCGGCGGCGGCGGCGGCGGTGGCGTATTCTTTACGTTGGCTTCGGGACCAAGCAGGAAGGGCGCTGGCCAT

mRNA sequence

ATGGCGAAGATGAGGACCCCCTCCTTGGTTCTAATCATTATGCTAATGGCCGCCGCCGCCGCACACTCCCTTCTTCTTGTAGATTGCAGACCGCTCCCATCCGAAACAACAGAGCGCCACCGTGCTGATCAAACGCCGCAAACTGCACCATCGCCACCCAGTGATTCTGCCAGCCGTACGACCGAAGACGGCGGCGGCGGCGGCGGCGGTGGCGTATTCTTTACGTTGGCTTCGGGACCAAGCAGGAAGGGCGCTGGCCAT

Coding sequence (CDS)

ATGGCGAAGATGAGGACCCCCTCCTTGGTTCTAATCATTATGCTAATGGCCGCCGCCGCCGCACACTCCCTTCTTCTTGTAGATTGCAGACCGCTCCCATCCGAAACAACAGAGCGCCACCGTGCTGATCAAACGCCGCAAACTGCACCATCGCCACCCAGTGATTCTGCCAGCCGTACGACCGAAGACGGCGGCGGCGGCGGCGGCGGTGGCGTATTCTTTACGTTGGCTTCGGGACCAAGCAGGAAGGGCGCTGGCCAT

Protein sequence

MAKMRTPSLVLIIMLMAAAAAHSLLLVDCRPLPSETTERHRADQTPQTAPSPPSDSASRTTEDGGGGGGGGVFFTLASGPSRKGAGH
Homology
BLAST of MC01g0892 vs. NCBI nr
Match: KAG6604156.1 (hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 5.98e-11
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 1  MAKMRTPSLVLIIMLMAAAAAHSLLLVDCRPLPSETTERHR------ADQTPQTAPSPPS 60
          M KM+  SL+LI++LMAA     L LVDCRPL S +T  H+      A  + + A S P 
Sbjct: 11 MPKMKNSSLLLIMVLMAAT--RFLPLVDCRPLRSGSTIEHQRTNNGSAISSSEIAASSPE 70

Query: 61 DSASRTTEDGGGGGGGGVFFTLASGPSRKGAGH 87
          DS SR++ DGG      V FTLASGPSRKGAGH
Sbjct: 71 DSGSRSSGDGG------VAFTLASGPSRKGAGH 95

BLAST of MC01g0892 vs. NCBI nr
Match: KAG6595007.1 (hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 3.85e-08
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 1  MAKMRTPSLVLIIMLMAAAAAHSLLLVDCRPLPS-ETTERHRADQTPQTAPSPPSDSASR 60
          MA +++ SL+LI+ L+AA     +LLVD RPL S  T + H  +     A  P + +AS 
Sbjct: 1  MANVKSSSLLLIVALIAATGF--VLLVDGRPLRSGSTNQSHPINNGSALAEKPETAAASP 60

Query: 61 TTEDG---GGGGGGGVFFTLASGPSRKGAGH 87
          T++      GGGGGGV FTL SGPSRKGAGH
Sbjct: 61 TSDSDIHQSGGGGGGVVFTLVSGPSRKGAGH 89

BLAST of MC01g0892 vs. NCBI nr
Match: KAE8647506.1 (hypothetical protein Csa_003725 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 1.44e-05
Identity = 42/91 (46.15%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 5   RTPSLVLIIMLMAAAAAHSLLLVDCRPL-PSETTERHR----ADQTPQTAPSPPSDSASR 64
           R  S +LII L+AA      L VDCRPL P    +RH     A   P  AP     +A+ 
Sbjct: 18  RISSFLLIIFLIAAP--RFFLYVDCRPLRPGSPIDRHHVHDNASALPHNAPPETQKAATA 77

Query: 65  TTEDGG---GGGGGGVFFTLASGPSRKGAGH 87
             + G    G  GGGV FT+ASGPSRKGAGH
Sbjct: 78  PIDSGAPPIGDEGGGVAFTMASGPSRKGAGH 106

BLAST of MC01g0892 vs. NCBI nr
Match: TYK12856.1 (hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa])

HSP 1 Score: 49.7 bits (117), Expect = 2.75e-05
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 0

Query: 5   RTPSLVLIIMLMAAAAAHSLLLVDCRPL-PSETTERHR---ADQTPQTAPSPPSDSASRT 64
           R  S +LII+LMAA      L VDCRPL P    +RH    A   P   P     +A+  
Sbjct: 18  RISSFLLIILLMAAP--RFFLSVDCRPLRPGSPIDRHHVHNASAIPHDGPETQK-AATAL 77

Query: 65  TEDGG---GGGGGGVFFTLASGPSRKGAGH 87
            + GG   G  GGGV FT+ASGPSRKGAGH
Sbjct: 78  IDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

BLAST of MC01g0892 vs. ExPASy TrEMBL
Match: A0A5D3CR30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004480 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.33e-05
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 0

Query: 5   RTPSLVLIIMLMAAAAAHSLLLVDCRPL-PSETTERHR---ADQTPQTAPSPPSDSASRT 64
           R  S +LII+LMAA      L VDCRPL P    +RH    A   P   P     +A+  
Sbjct: 18  RISSFLLIILLMAAP--RFFLSVDCRPLRPGSPIDRHHVHNASAIPHDGPETQK-AATAL 77

Query: 65  TEDGG---GGGGGGVFFTLASGPSRKGAGH 87
            + GG   G  GGGV FT+ASGPSRKGAGH
Sbjct: 78  IDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6604156.15.98e-1151.61hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595007.13.85e-0848.35hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647506.11.44e-0546.15hypothetical protein Csa_003725 [Cucumis sativus][more]
TYK12856.12.75e-0547.78hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3CR301.33e-0547.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g0892.1MC01g0892.1mRNA