MC01g0767 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0767
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ATP synthase subunit 9, mitochondrial
Location	MC01: 13778027 .. 13778221 (+)
RNA-Seq Expression	MC01g0767
Synteny	MC01g0767

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACCTTTTTGATCTCATCCGTATTC

mRNA sequence

CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACCTTTTTGATCTCATCCGTATTC

Coding sequence (CDS)

CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACCTTTTTGATCTCATCCGTATTC

Protein sequence

LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

Homology

[Close]

BLAST of MC01g0767 vs. ExPASy Swiss-Prot
Match: Q37550 (ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.9e-19
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 66
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. ExPASy Swiss-Prot
Match: P17254 (ATP synthase subunit 9, mitochondrial OS=Helianthus annuus OX=4232 GN=ATP9 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 8.3e-17
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNV SS IHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVLSSSIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 73

Query: 61 ISSV 65
          ISSV
Sbjct: 75 ISSV 73

[Close]

BLAST of MC01g0767 vs. ExPASy Swiss-Prot
Match: P60113 (ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-16
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA-----FL 74

Query: 61 ISSVF 66
          I  VF
Sbjct: 75 ILFVF 74

[Close]

BLAST of MC01g0767 vs. ExPASy Swiss-Prot
Match: P60118 (ATP synthase subunit 9, mitochondrial OS=Petunia hybrida OX=4102 GN=ATP9 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-15
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 5  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSV 64
          GAA+GIGNVFSSLIHSVARNPSLAKQ FGYAILGFALTEAIA FA   A     FLIS V
Sbjct: 19 GAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMA-----FLISFV 74

Query: 65 F 66
          F
Sbjct: 79 F 74

[Close]

BLAST of MC01g0767 vs. ExPASy Swiss-Prot
Match: P60117 (ATP synthase subunit 9, mitochondrial OS=Solanum lycopersicum OX=4081 GN=ATP9 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-15
Identity = 49/61 (80.33%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 5  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSV 64
          GAA+GIGNVFSSLIHSVARNPSLAKQ FGYAILGFALTEAIA FA   A     FLIS V
Sbjct: 19 GAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMA-----FLISFV 74

Query: 65 F 66
          F
Sbjct: 79 F 74

[Close]

BLAST of MC01g0767 vs. NCBI nr
Match: WP_131796660.1 (ATP synthase subunit C family protein [Candidatus Frankia datiscae])

HSP 1 Score: 105 bits (262), Expect = 4.41e-27
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQL 57
          LSGRGAA GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASK L
Sbjct: 37 LSGRGAAFGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKPL 93

[Close]

BLAST of MC01g0767 vs. NCBI nr
Match: AKE34108.1 (ATP synthase subunit 9, partial [Fragaria chiloensis])

HSP 1 Score: 95.5 bits (236), Expect = 3.46e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 1  IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 60

Query: 61 ISSVF 65
          ISSVF
Sbjct: 61 ISSVF 60

[Close]

BLAST of MC01g0767 vs. NCBI nr
Match: YP_009241667.1 (ATPase subunit 9 [Ziziphus jujuba] >AMP43650.1 ATPase subunit 9 [Ziziphus jujuba])

HSP 1 Score: 95.9 bits (237), Expect = 3.53e-24
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. NCBI nr
Match: YP_002608407.1 (ATPase subunit 9 [Vitis vinifera] >ACS15186.1 ATPase subunit 9 [Vitis vinifera] >CAQ77677.1 ATPase subunit 9 [Vitis vinifera] >VZL70178.1 atp9 [Vitis riparia x Vitis cinerea])

HSP 1 Score: 95.5 bits (236), Expect = 4.88e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. NCBI nr
Match: AHF22792.1 (ATP synthase subunit 9, partial [Fragaria iinumae] >AHF22793.1 ATP synthase subunit 9, partial [Fragaria mandshurica] >AHF22795.1 ATP synthase subunit 9, partial [Fragaria chiloensis] >AHF22796.1 ATP synthase subunit 9, partial [Fragaria virginiana] >AHF22797.1 ATP synthase subunit 9, partial [Fragaria vesca subsp. vesca] >AKE34106.1 ATP synthase subunit 9, partial [Fragaria vesca subsp. bracteata])

HSP 1 Score: 95.5 bits (236), Expect = 5.01e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. ExPASy TrEMBL
Match: A0A0F6T772 (ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria chiloensis OX=101007 GN=atp9 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.67e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 1  IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 60

Query: 61 ISSVF 65
          ISSVF
Sbjct: 61 ISSVF 60

[Close]

BLAST of MC01g0767 vs. ExPASy TrEMBL
Match: A0A142BZ06 (ATP synthase subunit 9, mitochondrial OS=Ziziphus jujuba OX=326968 GN=atp9 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.71e-24
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. ExPASy TrEMBL
Match: B6VJY9 (ATP synthase subunit 9, mitochondrial OS=Vitis vinifera OX=29760 GN=atp9 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.36e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. ExPASy TrEMBL
Match: A0A654ICJ0 (ATP synthase subunit 9, mitochondrial OS=Vitis riparia x Vitis cinerea OX=2018007 GN=atp9 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.36e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. ExPASy TrEMBL
Match: A0A0B4L0M8 (ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria iinumae OX=64939 GN=atp9 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.43e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FL
Sbjct: 15 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMA-----FL 74

Query: 61 ISSVF 65
          ISSVF
Sbjct: 75 ISSVF 74

[Close]

BLAST of MC01g0767 vs. TAIR 10
Match: AT2G07671.1 (ATP synthase subunit C family protein )

HSP 1 Score: 86.7 bits (213), Expect = 7.7e-18
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A     FL
Sbjct: 26 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA-----FL 85

Query: 61 ISSVF 66
          I  VF
Sbjct: 86 ILFVF 85

[Close]

BLAST of MC01g0767 vs. TAIR 10
Match: ATMG01080.1 (mitochondrial F0-ATPase subunit 9 )

HSP 1 Score: 86.7 bits (213), Expect = 7.7e-18
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFL 60
          ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A     FL
Sbjct: 26 IASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA-----FL 85

Query: 61 ISSVF 66
          I  VF
Sbjct: 86 ILFVF 85

[Close]

BLAST of MC01g0767 vs. TAIR 10
Match: ATMG00040.1 (ATP synthase subunit C family protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.0e-06
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASF 49
          ++  GAA+GIGNVFSSLIHSVARNPSLA  +    ++   L   +A+F
Sbjct: 26 IASAGAAIGIGNVFSSLIHSVARNPSLATTT--VLVVTLTLLGGVAAF 71

The following BLAST results are available for this feature:

BLAST of MC01g0767 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q37550	8.9e-19	81.54	ATP synthase subunit 9, mitochondrial OS=Malus domestica OX=3750 GN=ATP9 PE=3 SV...	[more]
P17254	8.3e-17	78.13	ATP synthase subunit 9, mitochondrial OS=Helianthus annuus OX=4232 GN=ATP9 PE=3 ...	[more]
P60113	1.1e-16	76.92	ATP synthase subunit 9, mitochondrial OS=Brassica napus OX=3708 GN=ATP9 PE=2 SV=...	[more]
P60118	2.7e-15	80.33	ATP synthase subunit 9, mitochondrial OS=Petunia hybrida OX=4102 GN=ATP9 PE=2 SV...	[more]
P60117	2.7e-15	80.33	ATP synthase subunit 9, mitochondrial OS=Solanum lycopersicum OX=4081 GN=ATP9 PE...	[more]

BLAST of MC01g0767 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_131796660.1	4.41e-27	96.49	ATP synthase subunit C family protein [Candidatus Frankia datiscae]	[more]
AKE34108.1	3.46e-24	81.54	ATP synthase subunit 9, partial [Fragaria chiloensis]	[more]
YP_009241667.1	3.53e-24	83.08	ATPase subunit 9 [Ziziphus jujuba] >AMP43650.1 ATPase subunit 9 [Ziziphus jujuba...	[more]
YP_002608407.1	4.88e-24	81.54	ATPase subunit 9 [Vitis vinifera] >ACS15186.1 ATPase subunit 9 [Vitis vinifera] ...	[more]
AHF22792.1	5.01e-24	81.54	ATP synthase subunit 9, partial [Fragaria iinumae] >AHF22793.1 ATP synthase subu...	[more]

BLAST of MC01g0767 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0F6T772	1.67e-24	81.54	ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria chiloensis OX=10100...	[more]
A0A142BZ06	1.71e-24	83.08	ATP synthase subunit 9, mitochondrial OS=Ziziphus jujuba OX=326968 GN=atp9 PE=3 ...	[more]
B6VJY9	2.36e-24	81.54	ATP synthase subunit 9, mitochondrial OS=Vitis vinifera OX=29760 GN=atp9 PE=3 SV...	[more]
A0A654ICJ0	2.36e-24	81.54	ATP synthase subunit 9, mitochondrial OS=Vitis riparia x Vitis cinerea OX=201800...	[more]
A0A0B4L0M8	2.43e-24	81.54	ATP synthase subunit 9, mitochondrial (Fragment) OS=Fragaria iinumae OX=64939 GN...	[more]

BLAST of MC01g0767 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07671.1	7.7e-18	76.92	ATP synthase subunit C family protein	[more]
ATMG01080.1	7.7e-18	76.92	mitochondrial F0-ATPase subunit 9	[more]
ATMG00040.1	4.0e-06	54.17	ATP synthase subunit C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000454	ATP synthase, F0 complex, subunit C	PRINTS	PR00124	ATPASEC	coord: 15..30 score: 50.37 coord: 32..57 score: 45.48
IPR000454	ATP synthase, F0 complex, subunit C	PANTHER	PTHR10031	ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL	coord: 4..62
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 1..46 e-value: 1.9E-7 score: 31.3
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 1..59 e-value: 5.3E-19 score: 70.1
None	No IPR available	PANTHER	PTHR10031:SF38	ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL	coord: 4..62
None	No IPR available	CDD	cd18182	ATP-synt_Fo_c_ATP5G3	coord: 5..49 e-value: 1.67861E-15 score: 61.3715
IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	PROSITE	PS00605	ATPASE_C	coord: 22..43
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0767.1	MC01g0767.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0015078	proton transmembrane transporter activity