MC01g0718 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0718
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein IDA-LIKE 2
Location	MC01: 13311788 .. 13311913 (+)
RNA-Seq Expression	MC01g0718
Synteny	MC01g0718

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGCTCAGAAGAGCCTCATTTTTTTGGCCATTTCTTTGGATTCTTGCCCAGAAGAATACCGATTCCAGCCTCTGGCCCCTCCAGAAAACACAACGATATTGGCTTGAGGAGTTGGAGATCGCCC

mRNA sequence

CCAAGCTCAGAAGAGCCTCATTTTTTTGGCCATTTCTTTGGATTCTTGCCCAGAAGAATACCGATTCCAGCCTCTGGCCCCTCCAGAAAACACAACGATATTGGCTTGAGGAGTTGGAGATCGCCC

Coding sequence (CDS)

CCAAGCTCAGAAGAGCCTCATTTTTTTGGCCATTTCTTTGGATTCTTGCCCAGAAGAATACCGATTCCAGCCTCTGGCCCCTCCAGAAAACACAACGATATTGGCTTGAGGAGTTGGAGATCGCCC

Protein sequence

PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP

Homology

[Close]

BLAST of MC01g0718 vs. ExPASy Swiss-Prot
Match: Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-08
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 10 GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 43
          GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 61 GHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of MC01g0718 vs. ExPASy Swiss-Prot
Match: Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-08
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 12 FFGFLPRRIPIPASGPSRKHNDIGLRSW 40
          F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 63 FLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of MC01g0718 vs. ExPASy Swiss-Prot
Match: Q6DUW7 (Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-05
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 5  EPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRS 42
          + H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 63 QDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]

BLAST of MC01g0718 vs. NCBI nr
Match: KAG7034431.1 (Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.60e-20
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 2  SSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
            ++PH +GHFFGFLPRRIPIPASGPSRKHNDIGLRSWR+P
Sbjct: 45 KPKKPHSYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRAP 85

[Close]

BLAST of MC01g0718 vs. NCBI nr
Match: KAE8647464.1 (hypothetical protein Csa_004278 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 8.09e-20
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1   PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
           P +   +++GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 78  PKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 119

[Close]

BLAST of MC01g0718 vs. NCBI nr
Match: KAE7998278.1 (hypothetical protein FH972_002837 [Carpinus fangiana])

HSP 1 Score: 78.6 bits (192), Expect = 9.92e-18
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
          P+S+   F GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 38 PNSQ---FSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MC01g0718 vs. NCBI nr
Match: KAF3970106.1 (hypothetical protein CMV_006161 [Castanea mollissima])

HSP 1 Score: 77.0 bits (188), Expect = 4.04e-17
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
          P S+   + GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 38 PKSQ---YSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MC01g0718 vs. NCBI nr
Match: KAB2002380.1 (hypothetical protein ES319_D11G062600v1 [Gossypium barbadense] >KAG4119131.1 hypothetical protein ERO13_D11G059900v2 [Gossypium hirsutum] >TYG44028.1 hypothetical protein ES288_D11G065300v1 [Gossypium darwinii] >TYH42464.1 hypothetical protein ES332_D11G064600v1 [Gossypium tomentosum] >TYI54296.1 hypothetical protein E1A91_D11G064600v1 [Gossypium mustelinum])

HSP 1 Score: 76.6 bits (187), Expect = 5.89e-17
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 3  SEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
            +P + GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 38 KPKPQYEGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]

BLAST of MC01g0718 vs. ExPASy TrEMBL
Match: A0A0A0KFQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.74e-20
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
          P +   +++GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP
Sbjct: 48 PKNGNNYYYGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 89

[Close]

BLAST of MC01g0718 vs. ExPASy TrEMBL
Match: A0A5N6QG36 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002837 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.80e-18
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
          P+S+   F GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 38 PNSQ---FSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MC01g0718 vs. ExPASy TrEMBL
Match: A0A7N2LYR6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.96e-17
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  PSSEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
          P S+   + GHF GFLPRRIPIPASGPSRKHNDIGL+SWRSP
Sbjct: 38 PKSQ---YSGHFLGFLPRRIPIPASGPSRKHNDIGLKSWRSP 76

[Close]

BLAST of MC01g0718 vs. ExPASy TrEMBL
Match: A0A5D2NA22 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G065900v1 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.85e-17
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 3  SEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
            +P + GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 38 KPKPQYKGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]

BLAST of MC01g0718 vs. ExPASy TrEMBL
Match: A0A5D2IIM6 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G064600v1 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.85e-17
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 3  SEEPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 42
            +P + GHF GFLPRR PIPASGPSRKHND+GL+SWRSP
Sbjct: 38 KPKPQYEGHFLGFLPRRFPIPASGPSRKHNDLGLQSWRSP 77

[Close]

BLAST of MC01g0718 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-09
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 10 GHFFGFLPRRIPIPASGPSRKHNDIGLRSWRSP 43
          GHF GFLPR +P+PAS PSRKHNDIG+++  SP
Sbjct: 61 GHFLGFLPRHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of MC01g0718 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-09
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 12 FFGFLPRRIPIPASGPSRKHNDIGLRSW 40
          F GFLPR  P+PASGPSRKHNDIGL SW
Sbjct: 63 FLGFLPRHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of MC01g0718 vs. TAIR 10
Match: AT5G09805.1 (inflorescence deficient in abscission (IDA)-like 3 )

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-06
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 5  EPHFFGHFFGFLPRRIPIPASGPSRKHNDIGLRSWRS 42
          + H    F G LPR+ P+P SGPSRKHN+IGL S ++
Sbjct: 63 QDHKSVQFLGSLPRQFPVPTSGPSRKHNEIGLSSTKT 99

[Close]

BLAST of MC01g0718 vs. TAIR 10
Match: AT1G76952.1 (inflorescence deficient in abscission (IDA)-like 5 )

HSP 1 Score: 42.0 bits (97), Expect = 1.4e-04
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0


Query: 12 FFGFLPRRIPIPASGPSRKHNDIGLRSWRS 42
          F GFLP+ +PIP S PSRKHN  GL+   S
Sbjct: 70 FSGFLPKTLPIPHSAPSRKHNVYGLQRTNS 99

The following BLAST results are available for this feature:

BLAST of MC01g0718 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DUW6	2.0e-08	69.70	Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1	[more]
Q6DUW9	4.6e-08	82.14	Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1	[more]
Q6DUW7	2.8e-05	54.05	Protein IDA-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=IDL3 PE=2 SV=1	[more]

BLAST of MC01g0718 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034431.1	1.60e-20	82.93	Protein IDA-LIKE 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAE8647464.1	8.09e-20	80.95	hypothetical protein Csa_004278 [Cucumis sativus]	[more]
KAE7998278.1	9.92e-18	80.95	hypothetical protein FH972_002837 [Carpinus fangiana]	[more]
KAF3970106.1	4.04e-17	78.57	hypothetical protein CMV_006161 [Castanea mollissima]	[more]
KAB2002380.1	5.89e-17	75.00	hypothetical protein ES319_D11G062600v1 [Gossypium barbadense] >KAG4119131.1 hyp...	[more]

BLAST of MC01g0718 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ3	1.74e-20	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G484020 PE=4 SV=1	[more]
A0A5N6QG36	4.80e-18	80.95	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002837 PE=4 SV=1	[more]
A0A7N2LYR6	1.96e-17	78.57	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5D2NA22	2.85e-17	75.00	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G065900v1 P...	[more]
A0A5D2IIM6	2.85e-17	75.00	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G064600v1 P...	[more]

BLAST of MC01g0718 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18715.1	1.5e-09	69.70	inflorescence deficient in abscission (IDA)-like 4	[more]
AT5G64667.1	3.2e-09	82.14	inflorescence deficient in abscission (IDA)-like 2	[more]
AT5G09805.1	2.0e-06	54.05	inflorescence deficient in abscission (IDA)-like 3	[more]
AT1G76952.1	1.4e-04	60.00	inflorescence deficient in abscission (IDA)-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..42
None	No IPR available	PANTHER	PTHR33599:SF15	PROTEIN IDA-LIKE 2	coord: 4..42
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 4..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0718.1	MC01g0718.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0016021	integral component of membrane