MC01g0664 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g0664
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 12881494 .. 12881802 (-)
RNA-Seq ExpressionMC01g0664
SyntenyMC01g0664
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATTGTTCGTAGTGGTGAAATTGAACTGCGTGAGGGAGGCGTCGGTGGCGTGGAATTTGAGGAGATTGGGACGGAAAATCAGCCACAAGAGGAGCACAGCAATGCCGACGACAATCACAAGGGTGATGATGATTTGGCAGATGAGATTGAAGATACAGCCGCAGCAGCAGTTGAAGAGGCAGCCGAGACAGCCGCAGCAGCCGCAGCCGCAGCCGCCGCCGCGGCCGTGGCGGTGGTAGGTCTTGGCAGGAGGAGGAATAGAAGGCCCATAGTAGGCTCCATTGAGGTGAGGCTGATTGGTCGCCAT

mRNA sequence

GTTATTGTTCGTAGTGGTGAAATTGAACTGCGTGAGGGAGGCGTCGGTGGCGTGGAATTTGAGGAGATTGGGACGGAAAATCAGCCACAAGAGGAGCACAGCAATGCCGACGACAATCACAAGGGTGATGATGATTTGGCAGATGAGATTGAAGATACAGCCGCAGCAGCAGTTGAAGAGGCAGCCGAGACAGCCGCAGCAGCCGCAGCCGCAGCCGCCGCCGCGGCCGTGGCGGTGGTAGGTCTTGGCAGGAGGAGGAATAGAAGGCCCATAGTAGGCTCCATTGAGGTGAGGCTGATTGGTCGCCAT

Coding sequence (CDS)

GTTATTGTTCGTAGTGGTGAAATTGAACTGCGTGAGGGAGGCGTCGGTGGCGTGGAATTTGAGGAGATTGGGACGGAAAATCAGCCACAAGAGGAGCACAGCAATGCCGACGACAATCACAAGGGTGATGATGATTTGGCAGATGAGATTGAAGATACAGCCGCAGCAGCAGTTGAAGAGGCAGCCGAGACAGCCGCAGCAGCCGCAGCCGCAGCCGCCGCCGCGGCCGTGGCGGTGGTAGGTCTTGGCAGGAGGAGGAATAGAAGGCCCATAGTAGGCTCCATTGAGGTGAGGCTGATTGGTCGCCAT

Protein sequence

VIVRSGEIELREGGVGGVEFEEIGTENQPQEEHSNADDNHKGDDDLADEIEDTAAAAVEEAAETAAAAAAAAAAAAVAVVGLGRRRNRRPIVGSIEVRLIGRH
Homology
BLAST of MC01g0664 vs. NCBI nr
Match: KCW49000.1 (hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis])

HSP 1 Score: 56.6 bits (135), Expect = 1.51e-07
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 3   VRSGEIELREGGVGGVEFEEIGTENQPQEEHSNADDNHKGDDDLADEIEDTAAAAVEEAA 62
           V  GE+EL E  VG VE +E+G E++P++E    D +H G+D++ DE+E+ AA A +   
Sbjct: 25  VGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGDHHGEDEVEDELEEAAATAAD--- 84

Query: 63  ETAAAAAAAAAAAAVAVVGLGRRRNRRPIVGSIEVRLIGRH 103
                   AA AAA AVVG+    +   +VG++EV L+ RH
Sbjct: 85  --------AAPAAAGAVVGVLLGGHGGAVVGAVEVGLLLRH 114

BLAST of MC01g0664 vs. NCBI nr
Match: KAA8516802.1 (hypothetical protein F0562_017088 [Nyssa sinensis])

HSP 1 Score: 50.4 bits (119), Expect = 1.74e-04
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 5   SGEIELREGGVGGVEFEEIGTENQPQEEHSNADDNHKGDDDLADEIEDTAAAAVEEAAET 64
            GE+EL EG VG ++   +G E++P++E  NA D   GDDDL +E+EDTA         T
Sbjct: 68  GGEVELSEGSVGDMKLHLVGAEDEPEDEDGNAYDGDDGDDDLEEEVEDTA---------T 127

Query: 65  AAAAAAAAAAAAVAVVG 81
            AA AA AA AA AVVG
Sbjct: 128 EAATAAIAAIAAGAVVG 135

BLAST of MC01g0664 vs. NCBI nr
Match: KAG2402710.1 (uncharacterized protein HKW66_Vig0239070 [Vigna angularis])

HSP 1 Score: 47.8 bits (112), Expect = 4.63e-04
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 18  VEFEEIGTENQPQEEHSNADDNHKGDDDLADEIEDTAAAAVEEAAETAAAAAAAAAAAAV 77
           VEFE+IG  N+P+EE  + DD+    +DL DE +D    AVE+AA TAA A A+ +AA +
Sbjct: 65  VEFEDIGAHNEPKEEREHGDDDEHDGEDLVDEADD----AVEDAATTAAQAPASTSAAGL 124

Query: 78  AVVGLGRRRNRRPIVGSI 95
             VGL RRRN   +V ++
Sbjct: 125 TAVGL-RRRNGGTVVSAV 137

BLAST of MC01g0664 vs. ExPASy TrEMBL
Match: A0A059A6N3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02613 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.31e-08
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 3   VRSGEIELREGGVGGVEFEEIGTENQPQEEHSNADDNHKGDDDLADEIEDTAAAAVEEAA 62
           V  GE+EL E  VG VE +E+G E++P++E    D +H G+D++ DE+E+ AA A +   
Sbjct: 25  VGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGDHHGEDEVEDELEEAAATAAD--- 84

Query: 63  ETAAAAAAAAAAAAVAVVGLGRRRNRRPIVGSIEVRLIGRH 103
                   AA AAA AVVG+    +   +VG++EV L+ RH
Sbjct: 85  --------AAPAAAGAVVGVLLGGHGGAVVGAVEVGLLLRH 114

BLAST of MC01g0664 vs. ExPASy TrEMBL
Match: A0A5J4ZGS4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017088 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.44e-05
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 5   SGEIELREGGVGGVEFEEIGTENQPQEEHSNADDNHKGDDDLADEIEDTAAAAVEEAAET 64
            GE+EL EG VG ++   +G E++P++E  NA D   GDDDL +E+EDTA         T
Sbjct: 68  GGEVELSEGSVGDMKLHLVGAEDEPEDEDGNAYDGDDGDDDLEEEVEDTA---------T 127

Query: 65  AAAAAAAAAAAAVAVVG 81
            AA AA AA AA AVVG
Sbjct: 128 EAATAAIAAIAAGAVVG 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KCW49000.11.51e-0740.59hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis][more]
KAA8516802.11.74e-0449.35hypothetical protein F0562_017088 [Nyssa sinensis][more]
KAG2402710.14.63e-0447.44uncharacterized protein HKW66_Vig0239070 [Vigna angularis][more]
Match NameE-valueIdentityDescription
A0A059A6N37.31e-0840.59Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02613 PE=4 SV... [more]
A0A5J4ZGS48.44e-0549.35Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017088 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g0664.1MC01g0664.1mRNA