MC01g0640 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0640
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	GPI-anchor transamidase isoform X1
Location	MC01: 12718328 .. 12718516 (-)
RNA-Seq Expression	MC01g0640
Synteny	MC01g0640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATATGGTATAATGCAGCGGTGGCCCTCCTTTGGGAGCTTTGGGCAAAGAGGAATTGGAGGATTTTTCAAATGGAAGAATCAGCTAGCAACGATTTTTGGGATGTGGCTAAATATCAAGCTTGTACTTGGTGTTCCCTTAACAAATATTTTTTTAACTATGGTTTTACTCATATTTATGCCAATTGG

mRNA sequence

ATCATATGGTATAATGCAGCGGTGGCCCTCCTTTGGGAGCTTTGGGCAAAGAGGAATTGGAGGATTTTTCAAATGGAAGAATCAGCTAGCAACGATTTTTGGGATGTGGCTAAATATCAAGCTTGTACTTGGTGTTCCCTTAACAAATATTTTTTTAACTATGGTTTTACTCATATTTATGCCAATTGG

Coding sequence (CDS)

ATCATATGGTATAATGCAGCGGTGGCCCTCCTTTGGGAGCTTTGGGCAAAGAGGAATTGGAGGATTTTTCAAATGGAAGAATCAGCTAGCAACGATTTTTGGGATGTGGCTAAATATCAAGCTTGTACTTGGTGTTCCCTTAACAAATATTTTTTTAACTATGGTTTTACTCATATTTATGCCAATTGG

Protein sequence

IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIYANW

Homology

[Close]

BLAST of MC01g0640 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 51.6 bits (122), Expect = 9.15e-06
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 2   IWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIYA 61
           +W N   ALL ELW +RN R+F+ +    ++ +  AK++A  WCSL   F ++  + IYA
Sbjct: 135 LWLNVVKALLSELWFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYA 194

Query: 62  NW 63
           NW
Sbjct: 195 NW 196

[Close]

BLAST of MC01g0640 vs. NCBI nr
Match: TYK28784.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.55e-05
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIY 60
           +IW N + ALL ++W + N RIF+ +    ++  D+AK  A TWC LNK F +Y    + 
Sbjct: 585 LIWGNMSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLS 644

Query: 61  ANW 63
            NW
Sbjct: 645 VNW 647

[Close]

BLAST of MC01g0640 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.55e-05
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIY 60
           +IW N + ALL ++W + N RIF+ +    ++  D+AK  A TWC LNK F +Y    + 
Sbjct: 632 LIWGNMSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLS 691

Query: 61  ANW 63
            NW
Sbjct: 692 VNW 694

[Close]

BLAST of MC01g0640 vs. NCBI nr
Match: RVW34013.1 (hypothetical protein CK203_091968 [Vitis vinifera])

HSP 1 Score: 49.7 bits (117), Expect = 7.29e-05
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIY 60
           ++W  A +A+LW +W +RN RIF+ +   S + WD+  + A  W S +K F       I+
Sbjct: 331 VLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVFKGIPLNVIH 390

Query: 61  ANW 63
            +W
Sbjct: 391 LDW 393

[Close]

BLAST of MC01g0640 vs. NCBI nr
Match: RVW15141.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 49.7 bits (117), Expect = 7.43e-05
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYF 51
           I+W  A +ALLW +W +RN RIF+ +   S + WD+  + A  W S +K F
Sbjct: 647 ILWQAACIALLWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVF 697

[Close]

BLAST of MC01g0640 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.43e-06
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 2   IWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIYA 61
           +W N   ALL ELW +RN R+F+ +    ++ +  AK++A  WCSL   F ++  + IYA
Sbjct: 135 LWLNVVKALLSELWFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYA 194

Query: 62  NW 63
           NW
Sbjct: 195 NW 196

[Close]

BLAST of MC01g0640 vs. ExPASy TrEMBL
Match: A0A5D3DZ52 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001490 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.49e-06
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIY 60
           +IW N + ALL ++W + N RIF+ +    ++  D+AK  A TWC LNK F +Y    + 
Sbjct: 585 LIWGNMSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLS 644

Query: 61  ANW 63
            NW
Sbjct: 645 VNW 647

[Close]

BLAST of MC01g0640 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.50e-06
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIY 60
           +IW N + ALL ++W + N RIF+ +    ++  D+AK  A TWC LNK F +Y    + 
Sbjct: 632 LIWGNMSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAATWCMLNKEFIDYSIQDLS 691

Query: 61  ANW 63
            NW
Sbjct: 692 VNW 694

[Close]

BLAST of MC01g0640 vs. ExPASy TrEMBL
Match: A0A438DEV1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_091968 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.53e-05
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYFFNYGFTHIY 60
           ++W  A +A+LW +W +RN RIF+ +   S + WD+  + A  W S +K F       I+
Sbjct: 331 VLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVFKGIPLNVIH 390

Query: 61  ANW 63
            +W
Sbjct: 391 LDW 393

[Close]

BLAST of MC01g0640 vs. ExPASy TrEMBL
Match: A0A438BVX7 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1293 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.60e-05
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 1   IIWYNAAVALLWELWAKRNWRIFQMEESASNDFWDVAKYQACTWCSLNKYF 51
           I+W  A +ALLW +W +RN RIF+ +   S + WD+  + A  W S +K F
Sbjct: 647 ILWQAACIALLWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVF 697

The following BLAST results are available for this feature:

BLAST of MC01g0640 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g0640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153214.1	9.15e-06	40.32	uncharacterized protein LOC111020765 [Momordica charantia]	[more]
TYK28784.1	1.55e-05	39.68	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0062564.1	1.55e-05	39.68	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
RVW34013.1	7.29e-05	33.33	hypothetical protein CK203_091968 [Vitis vinifera]	[more]
RVW15141.1	7.43e-05	41.18	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of MC01g0640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIE2	4.43e-06	40.32	uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5D3DZ52	7.49e-06	39.68	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7V5N8	7.50e-06	39.68	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A438DEV1	3.53e-05	33.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_091968 PE=4 SV=1	[more]
A0A438BVX7	3.60e-05	41.18	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1293 ...	[more]

BLAST of MC01g0640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0640.1	MC01g0640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0016787	hydrolase activity