MC01g0629 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0629
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	pentatricopeptide repeat-containing protein At2g36240
Location	MC01: 12659576 .. 12659795 (+)
RNA-Seq Expression	MC01g0629
Synteny	MC01g0629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTCTTTTCTCCGGAATCTGTGCAATGTAAGGAAAACAGGGAGACCTGATAGGTTGGAGATTGTTGGCATTCACAAGGGGATTGAACCAGAGACCAGTAGAGTCCTACATTACAGTTTCTGGGTACACCATGTTAGGCAACAAGGTGGAAGGGAAAACGCCTGTGAATGAGATGTTGGATAAGGAATTCATACCTGATATTGCAGCATATAACAGGTTC

mRNA sequence

AACTCTTTTCTCCGGAATCTGTGCAATGTAAGGAAAACAGGGAGACCTGATAGGTTGGAGATTGTTGGCATTCACAAGGGGATTGAACCAGAGACCAGTAGATACATTACAGTTTCTGGGTACACCATGTTAGGCAACAAGGTGGAAGGGAAAACGCCTGTGAATGAGATGTTGGATAAGGAATTCATACCTGATATTGCAGCATATAACAGGTTC

Coding sequence (CDS)

AACTCTTTTCTCCGGAATCTGTGCAATGTAAGGAAAACAGGGAGACCTGATAGGTTGGAGATTGTTGGCATTCACAAGGGGATTGAACCAGAGACCAGTAGATACATTACAGTTTCTGGGTACACCATGTTAGGCAACAAGGTGGAAGGGAAAACGCCTGTGAATGAGATGTTGGATAAGGAATTCATACCTGATATTGCAGCATATAACAGGTTC

Protein sequence

NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYITVSGYTMLGNKVEGKTPVNEMLDKEFIPDIAAYNRF

Homology

[Close]

BLAST of MC01g0629 vs. ExPASy Swiss-Prot
Match: Q9SJN2 (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana OX=3702 GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-11
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEP-ETSRYITVSGYTMLGNKVEGKTPVNEMLD 60
           N  LR+LC+   +   +RL ++   KG EP ET+ ++ VSG+T  G + EG+  VNEMLD
Sbjct: 407 NLLLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLD 466

Query: 61  KEFIPDIAAYNR 72
           K+ +PDI  YNR
Sbjct: 467 KDMLPDIFTYNR 478

[Close]

BLAST of MC01g0629 vs. NCBI nr
Match: XP_004140672.1 (pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus] >XP_011656750.1 pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus] >KAE8646734.1 hypothetical protein Csa_005739 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 7.45e-19
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L++LCNVRKT   ++L ++   KG EP+   Y T VSGYTM GNKVEG+  V EMLD
Sbjct: 398 NSLLQDLCNVRKTVEANKLRLLASSKGFEPDNKTYYTLVSGYTMEGNKVEGQRLVEEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KEFIPDIA YNR
Sbjct: 458 KEFIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. NCBI nr
Match: XP_022132469.1 (pentatricopeptide repeat-containing protein At2g36240 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 1.09e-18
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRY-ITVSGYTMLGNKVEGKTPVNEMLD 60
           NS L++LCNV+KT   +RL ++   KG EP+T  Y I +SGYTM GNKVEG+  V+EMLD
Sbjct: 422 NSLLQDLCNVKKTEEANRLRLLASSKGFEPDTKTYYILLSGYTMEGNKVEGERLVDEMLD 481

Query: 61  KEFIPDIAAYNR 71
           KEFIPDIA +NR
Sbjct: 482 KEFIPDIATFNR 493

[Close]

BLAST of MC01g0629 vs. NCBI nr
Match: XP_022977415.1 (pentatricopeptide repeat-containing protein At2g36240 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 1.43e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L+ LCNVRKT   +RL ++   KG EP++  Y T +SGYTM GNKVEG+  V+EMLD
Sbjct: 398 NSLLQELCNVRKTVEANRLRLLASSKGFEPDSKTYYTLISGYTMEGNKVEGQRVVDEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KE IPDIA YNR
Sbjct: 458 KELIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. NCBI nr
Match: KAG7034501.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 1.43e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L+ LCNVRKT   +RL ++   KG EP++  Y T +SGYTM GNKVEG+  V+EMLD
Sbjct: 398 NSLLQELCNVRKTVEANRLRLLASSKGFEPDSKTYYTLISGYTMEGNKVEGQRVVDEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KE IPDIA YNR
Sbjct: 458 KELIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. NCBI nr
Match: XP_022925788.1 (pentatricopeptide repeat-containing protein At2g36240 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 1.43e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L+ LCNVRKT   +RL ++   KG EP++  Y T +SGYTM GNKVEG+  V+EMLD
Sbjct: 398 NSLLQELCNVRKTVEANRLRLLASSKGFEPDSKTYYTLISGYTMEGNKVEGQRVVDEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KE IPDIA YNR
Sbjct: 458 KELIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. ExPASy TrEMBL
Match: A0A0A0KA47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087810 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.13e-19
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L++LCNVRKT   ++L ++   KG EP+   Y T VSGYTM GNKVEG+  V EMLD
Sbjct: 289 NSLLQDLCNVRKTVEANKLRLLASSKGFEPDNKTYYTLVSGYTMEGNKVEGQRLVEEMLD 348

Query: 61  KEFIPDIAAYNR 71
           KEFIPDIA YNR
Sbjct: 349 KEFIPDIATYNR 360

[Close]

BLAST of MC01g0629 vs. ExPASy TrEMBL
Match: A0A6J1BT52 (pentatricopeptide repeat-containing protein At2g36240 OS=Momordica charantia OX=3673 GN=LOC111005319 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.27e-19
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRY-ITVSGYTMLGNKVEGKTPVNEMLD 60
           NS L++LCNV+KT   +RL ++   KG EP+T  Y I +SGYTM GNKVEG+  V+EMLD
Sbjct: 422 NSLLQDLCNVKKTEEANRLRLLASSKGFEPDTKTYYILLSGYTMEGNKVEGERLVDEMLD 481

Query: 61  KEFIPDIAAYNR 71
           KEFIPDIA +NR
Sbjct: 482 KEFIPDIATFNR 493

[Close]

BLAST of MC01g0629 vs. ExPASy TrEMBL
Match: A0A6J1IM91 (pentatricopeptide repeat-containing protein At2g36240 OS=Cucurbita maxima OX=3661 GN=LOC111477762 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.94e-19
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L+ LCNVRKT   +RL ++   KG EP++  Y T +SGYTM GNKVEG+  V+EMLD
Sbjct: 398 NSLLQELCNVRKTVEANRLRLLASSKGFEPDSKTYYTLISGYTMEGNKVEGQRVVDEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KE IPDIA YNR
Sbjct: 458 KELIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. ExPASy TrEMBL
Match: A0A6J1EG86 (pentatricopeptide repeat-containing protein At2g36240 OS=Cucurbita moschata OX=3662 GN=LOC111433093 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.94e-19
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L+ LCNVRKT   +RL ++   KG EP++  Y T +SGYTM GNKVEG+  V+EMLD
Sbjct: 398 NSLLQELCNVRKTVEANRLRLLASSKGFEPDSKTYYTLISGYTMEGNKVEGQRVVDEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KE IPDIA YNR
Sbjct: 458 KELIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. ExPASy TrEMBL
Match: A0A1S3CB10 (pentatricopeptide repeat-containing protein At2g36240 OS=Cucumis melo OX=3656 GN=LOC103498941 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.29e-18
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEPETSRYIT-VSGYTMLGNKVEGKTPVNEMLD 60
           NS L++LCNV KT   ++L ++   KG EP+   Y T VSGYTM GNKVEG+  V EMLD
Sbjct: 398 NSLLQDLCNVGKTVEANKLRLLASSKGFEPDNKTYYTLVSGYTMEGNKVEGQRLVEEMLD 457

Query: 61  KEFIPDIAAYNR 71
           KEFIPDIA YNR
Sbjct: 458 KEFIPDIATYNR 469

[Close]

BLAST of MC01g0629 vs. TAIR 10
Match: AT2G36240.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1   NSFLRNLCNVRKTGRPDRLEIVGIHKGIEP-ETSRYITVSGYTMLGNKVEGKTPVNEMLD 60
           N  LR+LC+   +   +RL ++   KG EP ET+ ++ VSG+T  G + EG+  VNEMLD
Sbjct: 407 NLLLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLD 466

Query: 61  KEFIPDIAAYNR 72
           K+ +PDI  YNR
Sbjct: 467 KDMLPDIFTYNR 478

The following BLAST results are available for this feature:

BLAST of MC01g0629 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJN2	4.4e-11	45.83	Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC01g0629 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140672.1	7.45e-19	62.50	pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus] >XP_0116...	[more]
XP_022132469.1	1.09e-18	61.11	pentatricopeptide repeat-containing protein At2g36240 [Momordica charantia]	[more]
XP_022977415.1	1.43e-18	61.11	pentatricopeptide repeat-containing protein At2g36240 [Cucurbita maxima]	[more]
KAG7034501.1	1.43e-18	61.11	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022925788.1	1.43e-18	61.11	pentatricopeptide repeat-containing protein At2g36240 [Cucurbita moschata]	[more]

BLAST of MC01g0629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA47	2.13e-19	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087810 PE=4 SV=1	[more]
A0A6J1BT52	5.27e-19	61.11	pentatricopeptide repeat-containing protein At2g36240 OS=Momordica charantia OX=...	[more]
A0A6J1IM91	6.94e-19	61.11	pentatricopeptide repeat-containing protein At2g36240 OS=Cucurbita maxima OX=366...	[more]
A0A6J1EG86	6.94e-19	61.11	pentatricopeptide repeat-containing protein At2g36240 OS=Cucurbita moschata OX=3...	[more]
A0A1S3CB10	3.29e-18	61.11	pentatricopeptide repeat-containing protein At2g36240 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of MC01g0629 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36240.1	3.1e-12	45.83	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 1..72
None	No IPR available	PANTHER	PTHR47932:SF50	FERTILITY RESTORER HOMOLOGUE A-LIKE	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0629.1	MC01g0629.1	mRNA