MC01g0613 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g0613
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLysM domain-containing protein
LocationMC01: 12564441 .. 12564683 (-)
RNA-Seq ExpressionMC01g0613
SyntenyMC01g0613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAGAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCACACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCCATACTATTCATCCCAATTTTCTC

mRNA sequence

GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAGAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCACACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCCATACTATTCATCCCAATTTTCTC

Coding sequence (CDS)

GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAGAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCACACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCCATACTATTCATCCCAATTTTCTC

Protein sequence

VIVMVLSCCLCKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTIHPNFL
Homology
BLAST of MC01g0613 vs. NCBI nr
Match: AES82004.1 (peptidoglycan-binding LysM domain protein [Medicago truncatula])

HSP 1 Score: 105 bits (263), Expect = 1.34e-27
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
          VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 15 VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 74

Query: 61 HINDSDDVFPGLVIKITPFRH 74
          HI+D DDVFPGLVIKI PF +
Sbjct: 75 HIHDPDDVFPGLVIKINPFTN 95

BLAST of MC01g0613 vs. NCBI nr
Match: RHN48654.1 (putative LysM domain-containing protein [Medicago truncatula])

HSP 1 Score: 105 bits (263), Expect = 1.73e-27
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1   VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
           VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 24  VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 83

Query: 61  HINDSDDVFPGLVIKITPFRH 74
           HI+D DDVFPGLVIKI PF +
Sbjct: 84  HIHDPDDVFPGLVIKINPFTN 104

BLAST of MC01g0613 vs. NCBI nr
Match: XP_019186406.1 (PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil])

HSP 1 Score: 105 bits (261), Expect = 4.26e-27
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 2   IVMVLSCCLCKSQEMEMEMEM----------ACDEIYVVREGETLHTISDKCGDPFILQH 61
           +++VLSCC     E   +M +           CDEIYVVREGETLHTISDKCGDPFI++ 
Sbjct: 28  LMLVLSCCESTENEFAAKMMVERPPHAAAAGVCDEIYVVREGETLHTISDKCGDPFIVEE 87

Query: 62  NPHINDSDDVFPGLVIKITPFRHTI 76
           NPHI+D DDVFPGLVIKITPF H +
Sbjct: 88  NPHIHDPDDVFPGLVIKITPFNHRL 112

BLAST of MC01g0613 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (257), Expect = 1.03e-26
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 11 CKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKIT 70
          C SQE+ M     CDEIYVVREGETL +IS+KCGDPFI +HNPHIND DDVFPGLVIKIT
Sbjct: 26 CNSQEVLM----GCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKIT 85

Query: 71 PFRH 74
          PF H
Sbjct: 86 PFLH 85

BLAST of MC01g0613 vs. NCBI nr
Match: CAA2970656.1 (Peptidoglycan-binding lysin domain-containing [Olea europaea subsp. europaea])

HSP 1 Score: 103 bits (258), Expect = 1.06e-26
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 2   IVMVLSCCLCKS------QEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHI 61
           +++VLSCC  +       Q+M   +E  CDEIYVVREGETLHTIS+KCGDP+I++ NPHI
Sbjct: 25  LMLVLSCCESRDGEYYTLQQMNDHVERPCDEIYVVREGETLHTISEKCGDPYIVEENPHI 84

Query: 62  NDSDDVFPGLVIKITPFR 73
            D DDVFPGLVIKITPF+
Sbjct: 85  QDPDDVFPGLVIKITPFK 102

BLAST of MC01g0613 vs. ExPASy TrEMBL
Match: G7L607 (Peptidoglycan-binding LysM domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g104250 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 6.47e-28
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
          VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 15 VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 74

Query: 61 HINDSDDVFPGLVIKITPFRH 74
          HI+D DDVFPGLVIKI PF +
Sbjct: 75 HIHDPDDVFPGLVIKINPFTN 95

BLAST of MC01g0613 vs. ExPASy TrEMBL
Match: A0A396HA20 (Putative LysM domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0266071 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 8.37e-28
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1   VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNP 60
           VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NP
Sbjct: 24  VIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENP 83

Query: 61  HINDSDDVFPGLVIKITPFRH 74
           HI+D DDVFPGLVIKI PF +
Sbjct: 84  HIHDPDDVFPGLVIKINPFTN 104

BLAST of MC01g0613 vs. ExPASy TrEMBL
Match: A0A5N6LJ20 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_42020 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 6.07e-27
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 1   VIVMVLSCCLCKSQEMEMEMEM------ACDEIYVVREGETLHTISDKCGDPFILQHNPH 60
           VI++VLSCC   + E E  ++        CDEIYVVREGETLHTI DKCGDP+I++ NPH
Sbjct: 23  VIMLVLSCCESSTTENEKRVQTNVVDHRPCDEIYVVREGETLHTIGDKCGDPYIVEENPH 82

Query: 61  INDSDDVFPGLVIKITPFRH 74
           I+D DDVFPGLVIKITPF++
Sbjct: 83  IHDPDDVFPGLVIKITPFKN 102

BLAST of MC01g0613 vs. ExPASy TrEMBL
Match: A0A2G2VUW0 (LysM domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_24433 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 6.66e-27
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 0

Query: 2   IVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           I++VLSCC     + +  ++M       ACDEIYVV+EGETLHTIS+KCGDPFI++ NPH
Sbjct: 24  IMLVLSCCESSENDHQFIVQMQGNNYNKACDEIYVVKEGETLHTISEKCGDPFIVEENPH 83

Query: 62  INDSDDVFPGLVIKITPFRH 74
           I+D DDVFPGLVIKITPF++
Sbjct: 84  IHDPDDVFPGLVIKITPFKN 103

BLAST of MC01g0613 vs. ExPASy TrEMBL
Match: A0A2G3BGH4 (LysM domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_26427 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 6.66e-27
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 0

Query: 2   IVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPH 61
           I++VLSCC     + +  ++M       ACDEIYVV+EGETLHTIS+KCGDPFI++ NPH
Sbjct: 24  IMLVLSCCESSENDHQFIVQMQGNNYNKACDEIYVVKEGETLHTISEKCGDPFIVEENPH 83

Query: 62  INDSDDVFPGLVIKITPFRH 74
           I+D DDVFPGLVIKITPF++
Sbjct: 84  IHDPDDVFPGLVIKITPFKN 103

BLAST of MC01g0613 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 24 CDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF 73
          C+EIY+V EGETLHTI DKCGDPFI++ NPHI+D DDVFPGLV+KI PF
Sbjct: 48 CEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPF 96

BLAST of MC01g0613 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 23  ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITP 72
           ACDEIY V+EGETL TIS+KCGDP+I++ NPHI+D DD+FPGL+I+ITP
Sbjct: 59  ACDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

BLAST of MC01g0613 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-17
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 11  CKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKI 70
           C+    +  ME  C+E+YVV EG+TLH+IS+KCGDPFI++ NPHI+D DDVFPGL+IK+
Sbjct: 46  CEVWRGKQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AES82004.11.34e-2762.96peptidoglycan-binding LysM domain protein [Medicago truncatula][more]
RHN48654.11.73e-2762.96putative LysM domain-containing protein [Medicago truncatula][more]
XP_019186406.14.26e-2761.18PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil][more]
KAG6595189.11.03e-2676.56hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
CAA2970656.11.06e-2664.10Peptidoglycan-binding lysin domain-containing [Olea europaea subsp. europaea][more]
Match NameE-valueIdentityDescription
G7L6076.47e-2862.96Peptidoglycan-binding LysM domain protein OS=Medicago truncatula OX=3880 GN=MTR_... [more]
A0A396HA208.37e-2862.96Putative LysM domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA... [more]
A0A5N6LJ206.07e-2763.75Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_42020 PE=4 SV=1[more]
A0A2G2VUW06.66e-2762.50LysM domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_24433 PE=4... [more]
A0A2G3BGH46.66e-2762.50LysM domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_26427 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G62150.13.9e-1977.55peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.11.6e-1773.47peptidoglycan-binding LysM domain-containing protein [more]
AT4G25433.12.8e-1761.02peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainPFAMPF01476LysMcoord: 28..70
e-value: 1.2E-5
score: 25.3
IPR018392LysM domainCDDcd00118LysMcoord: 27..69
e-value: 1.13979E-6
score: 39.3909
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 18..76
e-value: 3.5E-8
score: 34.8
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 3..74
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 3..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g0613.1MC01g0613.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane