MC01g0542 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0542
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Small polypeptide DEVIL 16
Location	MC01: 11814912 .. 11815109 (+)
RNA-Seq Expression	MC01g0542
Synteny	MC01g0542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGGAGTGAAGAAGGAAAAAAGTGGGAAGAAGAACAATTCGTCAAATCAAAGTGGTAATTTTGAATGTGATCCATGTAGTTGCAAATCCTTTGGCCAAAAATGCAGCAATTTGGTGAAGAAGCAGCGGGCCAAATTCTACATTCTCCGCCGCTGTGTCGCCATGCTCGTCTGCTCCCATGACCGTGGCGAT

mRNA sequence

ATGGAAGATGGAGTGAAGAAGGAAAAAAGTGGGAAGAAGAACAATTCGTCAAATCAAAGTGGTAATTTTGAATGTGATCCATGTAGTTGCAAATCCTTTGGCCAAAAATGCAGCAATTTGGTGAAGAAGCAGCGGGCCAAATTCTACATTCTCCGCCGCTGTGTCGCCATGCTCGTCTGCTCCCATGACCGTGGCGAT

Coding sequence (CDS)

ATGGAAGATGGAGTGAAGAAGGAAAAAAGTGGGAAGAAGAACAATTCGTCAAATCAAAGTGGTAATTTTGAATGTGATCCATGTAGTTGCAAATCCTTTGGCCAAAAATGCAGCAATTTGGTGAAGAAGCAGCGGGCCAAATTCTACATTCTCCGCCGCTGTGTCGCCATGCTCGTCTGCTCCCATGACCGTGGCGAT

Protein sequence

MEDGVKKEKSGKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD

Homology

[Close]

BLAST of MC01g0542 vs. ExPASy Swiss-Prot
Match: Q7XXN8 (Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-12
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 22 NFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDR 65
          N  C+P  CK+FGQKCS++VKKQRAKFYILRRC+AMLVC HD+
Sbjct: 6  NGTCEP--CKTFGQKCSHVVKKQRAKFYILRRCIAMLVCWHDQ 46

[Close]

BLAST of MC01g0542 vs. ExPASy Swiss-Prot
Match: Q8LBB5 (Small polypeptide DEVIL 20 OS=Arabidopsis thaliana OX=3702 GN=DVL20 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 11 GKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDR 65
          G++N++S       C P   K+F  KCS++V+KQRAKFYIL RC+AMLVC   R
Sbjct: 2  GEENSTSG-----TCKP--SKTFKAKCSHMVRKQRAKFYILGRCLAMLVCGRGR 48

[Close]

BLAST of MC01g0542 vs. ExPASy Swiss-Prot
Match: Q8L7D0 (Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-06
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 10  SGKKNNSSNQSGNF-----ECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDR 67
           S   ++SS+ S +F          S  S  QK S+L K+Q+A+FYI+RRCVAMLVC H  
Sbjct: 53  SSSSSSSSSISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKH 112

[Close]

BLAST of MC01g0542 vs. ExPASy Swiss-Prot
Match: Q8S8S3 (Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 15 NSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHD 64
          +SS  S +F        +F +KC+ LVK+QRA+FYI+RRCV ML+C  D
Sbjct: 34 SSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRD 82

[Close]

BLAST of MC01g0542 vs. ExPASy Swiss-Prot
Match: Q6IM93 (Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 33 FGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 67
          F +KC  LVK+QRA+FYI+RRCV ML+C  D  +
Sbjct: 40 FTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNN 73

[Close]

BLAST of MC01g0542 vs. NCBI nr
Match: XP_010653604.1 (PREDICTED: uncharacterized protein LOC104880065 [Vitis vinifera] >XP_034694862.1 uncharacterized protein LOC117921162 [Vitis riparia] >CBI32764.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 9.11e-20
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 12 KKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          K+NN   QS   +  PC CKSFGQKCS+LVKKQRAKFYILRRC+AMLVC H+RGD
Sbjct: 4  KENNIGLQSHQQDRHPCRCKSFGQKCSHLVKKQRAKFYILRRCIAMLVCWHERGD 58

[Close]

BLAST of MC01g0542 vs. NCBI nr
Match: XP_030495617.1 (uncharacterized protein LOC115711422 [Cannabis sativa])

HSP 1 Score: 82.4 bits (202), Expect = 5.69e-19
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 16 SSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          SS+ S +++C+PC  KSFGQKCS+LVKKQRAKFYILRRC+AMLVC  DRGD
Sbjct: 13 SSSNSNSYQCEPC--KSFGQKCSHLVKKQRAKFYILRRCIAMLVCWRDRGD 61

[Close]

BLAST of MC01g0542 vs. NCBI nr
Match: XP_011657662.1 (uncharacterized protein LOC105435882 [Cucumis sativus] >KAE8647404.1 hypothetical protein Csa_004339 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 5.77e-19
Identity = 48/74 (64.86%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MEDGVKKEK--SGKKNNSSNQSG------NFECDPCSCKSFGQKCSNLVKKQRAKFYILR 60
          ME GVKKEK  SG+KN++SN S         E    S  SFGQKCSNLVKKQR KFYILR
Sbjct: 1  MEGGVKKEKKSSGRKNSNSNSSNLSKIEIGEEYPNSSSSSFGQKCSNLVKKQRTKFYILR 60

Query: 61 RCVAMLVCSHDRGD 66
          RCVA+L+CSHDR D
Sbjct: 61 RCVALLLCSHDRPD 74

[Close]

BLAST of MC01g0542 vs. NCBI nr
Match: OMO73568.1 (hypothetical protein CCACVL1_17215 [Corchorus capsularis])

HSP 1 Score: 81.6 bits (200), Expect = 1.01e-18
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 11 GKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          GK+N++   S N  C+PC  +SFGQKCSNLVK+QRAKFYILRRC+AMLVC  DRGD
Sbjct: 3  GKENDTRFSSKNHACEPC--RSFGQKCSNLVKRQRAKFYILRRCIAMLVCWRDRGD 56

[Close]

BLAST of MC01g0542 vs. NCBI nr
Match: PON60334.1 (DEVIL-like protein [Parasponia andersonii] >POO01709.1 DEVIL-like protein [Trema orientale])

HSP 1 Score: 81.3 bits (199), Expect = 1.44e-18
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 10 SGKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          SGK++N  N S +++C+PC  +SFGQKCS+LVKKQRAKFYILRRC+AMLVC  DRGD
Sbjct: 3  SGKESNI-NGSSSYQCEPC--RSFGQKCSHLVKKQRAKFYILRRCIAMLVCWRDRGD 56

[Close]

BLAST of MC01g0542 vs. ExPASy TrEMBL
Match: D7TQP4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01490 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.41e-20
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 12 KKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          K+NN   QS   +  PC CKSFGQKCS+LVKKQRAKFYILRRC+AMLVC H+RGD
Sbjct: 4  KENNIGLQSHQQDRHPCRCKSFGQKCSHLVKKQRAKFYILRRCIAMLVCWHERGD 58

[Close]

BLAST of MC01g0542 vs. ExPASy TrEMBL
Match: A0A1R3HTD0 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17215 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.91e-19
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 11 GKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          GK+N++   S N  C+PC  +SFGQKCSNLVK+QRAKFYILRRC+AMLVC  DRGD
Sbjct: 3  GKENDTRFSSKNHACEPC--RSFGQKCSNLVKRQRAKFYILRRCIAMLVCWRDRGD 56

[Close]

BLAST of MC01g0542 vs. ExPASy TrEMBL
Match: A0A2P5CH22 (DEVIL-like protein OS=Parasponia andersonii OX=3476 GN=PanDVL7 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.98e-19
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 10 SGKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          SGK++N  N S +++C+PC  +SFGQKCS+LVKKQRAKFYILRRC+AMLVC  DRGD
Sbjct: 3  SGKESNI-NGSSSYQCEPC--RSFGQKCSHLVKKQRAKFYILRRCIAMLVCWRDRGD 56

[Close]

BLAST of MC01g0542 vs. ExPASy TrEMBL
Match: A0A2P5FV95 (DEVIL-like protein OS=Trema orientale OX=63057 GN=TorDVL7 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.98e-19
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 10 SGKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          SGK++N  N S +++C+PC  +SFGQKCS+LVKKQRAKFYILRRC+AMLVC  DRGD
Sbjct: 3  SGKESNI-NGSSSYQCEPC--RSFGQKCSHLVKKQRAKFYILRRCIAMLVCWRDRGD 56

[Close]

BLAST of MC01g0542 vs. ExPASy TrEMBL
Match: A0A1R3HQ16 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17786 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.84e-18
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 11 GKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 66
          GK+N++   S N  C+PC  +SFGQKCS+LVK+QRAKFYILRRC+AMLVC  DRGD
Sbjct: 3  GKENDTRFSSKNHACEPC--RSFGQKCSHLVKRQRAKFYILRRCIAMLVCWRDRGD 56

[Close]

BLAST of MC01g0542 vs. TAIR 10
Match: AT2G36985.1 (DVL family protein )

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-13
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 22 NFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDR 65
          N  C+P  CK+FGQKCS++VKKQRAKFYILRRC+AMLVC HD+
Sbjct: 6  NGTCEP--CKTFGQKCSHVVKKQRAKFYILRRCIAMLVCWHDQ 46

[Close]

BLAST of MC01g0542 vs. TAIR 10
Match: AT3G53232.1 (ROTUNDIFOLIA like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 3.7e-07
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 11 GKKNNSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDR 65
          G++N++S       C P   K+F  KCS++V+KQRAKFYIL RC+AMLVC   R
Sbjct: 2  GEENSTSG-----TCKP--SKTFKAKCSHMVRKQRAKFYILGRCLAMLVCGRGR 48

[Close]

BLAST of MC01g0542 vs. TAIR 10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2 )

HSP 1 Score: 50.4 bits (119), Expect = 6.2e-07
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 10  SGKKNNSSNQSGNF-----ECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHDR 67
           S   ++SS+ S +F          S  S  QK S+L K+Q+A+FYI+RRCVAMLVC H  
Sbjct: 53  SSSSSSSSSISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKH 112

[Close]

BLAST of MC01g0542 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 15 NSSNQSGNFECDPCSCKSFGQKCSNLVKKQRAKFYILRRCVAMLVCSHD 64
          +SS  S +F        +F +KC+ LVK+QRA+FYI+RRCV ML+C  D
Sbjct: 34 SSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRD 82

[Close]

BLAST of MC01g0542 vs. TAIR 10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7 )

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 33 FGQKCSNLVKKQRAKFYILRRCVAMLVCSHDRGD 67
          F +KC  LVK+QRA+FYI+RRCV ML+C  D  +
Sbjct: 40 FTRKCGRLVKEQRARFYIMRRCVVMLICWTDHNN 73

The following BLAST results are available for this feature:

BLAST of MC01g0542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XXN8	6.3e-12	74.42	Small polypeptide DEVIL 16 OS=Arabidopsis thaliana OX=3702 GN=DVL16 PE=2 SV=1	[more]
Q8LBB5	5.1e-06	51.85	Small polypeptide DEVIL 20 OS=Arabidopsis thaliana OX=3702 GN=DVL20 PE=3 SV=1	[more]
Q8L7D0	8.8e-06	46.77	Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1	[more]
Q8S8S3	2.0e-05	48.98	Small polypeptide DEVIL 11 OS=Arabidopsis thaliana OX=3702 GN=DVL11 PE=3 SV=1	[more]
Q6IM93	2.0e-05	58.82	Small polypeptide DEVIL 8 OS=Arabidopsis thaliana OX=3702 GN=DVL8 PE=3 SV=1	[more]

BLAST of MC01g0542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010653604.1	9.11e-20	72.73	PREDICTED: uncharacterized protein LOC104880065 [Vitis vinifera] >XP_034694862.1...	[more]
XP_030495617.1	5.69e-19	74.51	uncharacterized protein LOC115711422 [Cannabis sativa]	[more]
XP_011657662.1	5.77e-19	64.86	uncharacterized protein LOC105435882 [Cucumis sativus] >KAE8647404.1 hypothetica...	[more]
OMO73568.1	1.01e-18	69.64	hypothetical protein CCACVL1_17215 [Corchorus capsularis]	[more]
PON60334.1	1.44e-18	70.18	DEVIL-like protein [Parasponia andersonii] >POO01709.1 DEVIL-like protein [Trema...	[more]

BLAST of MC01g0542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D7TQP4	4.41e-20	72.73	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01490 PE=4 SV=...	[more]
A0A1R3HTD0	4.91e-19	69.64	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17215 PE=4 ...	[more]
A0A2P5CH22	6.98e-19	70.18	DEVIL-like protein OS=Parasponia andersonii OX=3476 GN=PanDVL7 PE=4 SV=1	[more]
A0A2P5FV95	6.98e-19	70.18	DEVIL-like protein OS=Trema orientale OX=63057 GN=TorDVL7 PE=4 SV=1	[more]
A0A1R3HQ16	2.84e-18	67.86	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17786 PE=4 ...	[more]

BLAST of MC01g0542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36985.1	4.5e-13	74.42	DVL family protein	[more]
AT3G53232.1	3.7e-07	51.85	ROTUNDIFOLIA like 1	[more]
AT2G29125.1	6.2e-07	46.77	ROTUNDIFOLIA like 2	[more]
AT2G39705.1	1.4e-06	48.98	ROTUNDIFOLIA like 8	[more]
AT3G55515.1	1.4e-06	58.82	ROTUNDIFOLIA like 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 42..60 e-value: 1.9E-11 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR33102:SF8	DVL FAMILY PROTEIN	coord: 13..66
None	No IPR available	PANTHER	PTHR33102	DVL19-RELATED-RELATED	coord: 13..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0542.1	MC01g0542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0048367	shoot system development
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane