MC01g0323 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0323
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L13, putative
Location	MC01: 9922062 .. 9922163 (-)
RNA-Seq Expression	MC01g0323
Synteny	MC01g0323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGGAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG

mRNA sequence

TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGGAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG

Coding sequence (CDS)

TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGGAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG

Protein sequence

YVGNLKERSLKDQLAKPTEVIWKALLCMLPRNKL

Homology

[Close]

BLAST of MC01g0323 vs. NCBI nr
Match: XP_021284648.1 (uncharacterized protein LOC110416852 isoform X2 [Herrania umbratica])

HSP 1 Score: 56.6 bits (135), Expect = 1.37e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQ+AK PTEVI KA+L MLPRNKL
Sbjct: 96  YVGNLKERSLKDQMAKDPTEVIRKAVLRMLPRNKL 130

[Close]

BLAST of MC01g0323 vs. NCBI nr
Match: XP_017980818.1 (PREDICTED: 50S ribosomal protein L13 isoform X2 [Theobroma cacao])

HSP 1 Score: 56.6 bits (135), Expect = 1.37e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQ+AK PTEVI KA+L MLPRNKL
Sbjct: 96  YVGNLKERSLKDQMAKDPTEVIRKAVLRMLPRNKL 130

[Close]

BLAST of MC01g0323 vs. NCBI nr
Match: MQM23610.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 57.4 bits (137), Expect = 1.62e-08
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 89  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 123

[Close]

BLAST of MC01g0323 vs. NCBI nr
Match: XP_015570542.1 (uncharacterized protein LOC8269842 isoform X1 [Ricinus communis] >EEF49983.1 50S ribosomal protein L13, putative [Ricinus communis])

HSP 1 Score: 57.4 bits (137), Expect = 1.79e-08
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MC01g0323 vs. NCBI nr
Match: XP_002509553.1 (uncharacterized protein LOC8271774 [Ricinus communis] >EEF50940.1 50S ribosomal protein L13, putative [Ricinus communis])

HSP 1 Score: 57.4 bits (137), Expect = 1.79e-08
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MC01g0323 vs. ExPASy TrEMBL
Match: A0A5K1B9M7 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS15017 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.64e-09
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1  YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
          YVG+LK+RSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 1  YVGHLKQRSLKDQLAKDPTEVIRKAVLRMLPRNKL 35

[Close]

BLAST of MC01g0323 vs. ExPASy TrEMBL
Match: A0A6J1ACG3 (uncharacterized protein LOC110416852 isoform X2 OS=Herrania umbratica OX=108875 GN=LOC110416852 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.64e-09
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQ+AK PTEVI KA+L MLPRNKL
Sbjct: 96  YVGNLKERSLKDQMAKDPTEVIRKAVLRMLPRNKL 130

[Close]

BLAST of MC01g0323 vs. ExPASy TrEMBL
Match: B9RBL9 (50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1678530 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.67e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MC01g0323 vs. ExPASy TrEMBL
Match: B9RFL2 (50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1435670 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.67e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MC01g0323 vs. ExPASy TrEMBL
Match: A0A6J1BUX0 (uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005959 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.88e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 34
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 95  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 129

[Close]

BLAST of MC01g0323 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 35
           Y+G+LKERSLKDQ+AK PTEVI KA+  MLP N L
Sbjct: 97  YIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNL 131

[Close]

BLAST of MC01g0323 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVIWKALLCMLPRNKL 35
           Y+G+LKERSLKDQ+AK PTEVI KA+  MLP N L
Sbjct: 97  YIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNL 131

The following BLAST results are available for this feature:

BLAST of MC01g0323 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g0323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021284648.1	1.37e-08	85.71	uncharacterized protein LOC110416852 isoform X2 [Herrania umbratica]	[more]
XP_017980818.1	1.37e-08	85.71	PREDICTED: 50S ribosomal protein L13 isoform X2 [Theobroma cacao]	[more]
MQM23610.1	1.62e-08	88.57	hypothetical protein [Colocasia esculenta]	[more]
XP_015570542.1	1.79e-08	88.57	uncharacterized protein LOC8269842 isoform X1 [Ricinus communis] >EEF49983.1 50S...	[more]
XP_002509553.1	1.79e-08	88.57	uncharacterized protein LOC8271774 [Ricinus communis] >EEF50940.1 50S ribosomal ...	[more]

BLAST of MC01g0323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K1B9M7	5.64e-09	82.86	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS15...	[more]
A0A6J1ACG3	6.64e-09	85.71	uncharacterized protein LOC110416852 isoform X2 OS=Herrania umbratica OX=108875 ...	[more]
B9RBL9	8.67e-09	88.57	50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1678530 ...	[more]
B9RFL2	8.67e-09	88.57	50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1435670 ...	[more]
A0A6J1BUX0	8.88e-09	88.57	uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of MC01g0323 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01790.1	2.1e-06	71.43	Ribosomal protein L13 family protein	[more]
AT3G01790.2	2.1e-06	71.43	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 1..34 e-value: 1.8E-6 score: 29.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0323.1	MC01g0323.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome