MC01g0225 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0225
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	auxin-regulated gene involved in organ size
Location	MC01: 8787785 .. 8787979 (+)
RNA-Seq Expression	MC01g0225
Synteny	MC01g0225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGCATTCTTTAGCTGGAGATCGGCGGTAATGTTGATTGGTGTGGCGGTGTCGCTTCTGATATTGCCGGTGGTGCTGCCGCCGCTGCCGCCGCCGCCGCTTCTGCTGCTGTTTGTTCCGGTGCTGATCATGTCGCTGCTCGTATTCTTGGCGATGTCGCCGTCGCAAGTGCCGGCGGAGGACAGCCAT

mRNA sequence

ATGGTGAGAGCATTCTTTAGCTGGAGATCGGCGGTAATGTTGATTGGTGTGGCGGTGTCGCTTCTGATATTGCCGGTGGTGCTGCCGCCGCTGCCGCCGCCGCCGCTTCTGCTGCTGTTTGTTCCGGTGCTGATCATGTCGCTGCTCGTATTCTTGGCGATGTCGCCGTCGCAAGTGCCGGCGGAGGACAGCCAT

Coding sequence (CDS)

ATGGTGAGAGCATTCTTTAGCTGGAGATCGGCGGTAATGTTGATTGGTGTGGCGGTGTCGCTTCTGATATTGCCGGTGGTGCTGCCGCCGCTGCCGCCGCCGCCGCTTCTGCTGCTGTTTGTTCCGGTGCTGATCATGTCGCTGCTCGTATTCTTGGCGATGTCGCCGTCGCAAGTGCCGGCGGAGGACAGCCAT

Protein sequence

MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAEDSH

Homology

[Close]

BLAST of MC01g0225 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 5.4e-08
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           +FS  S V+L+G+  SLLILP+VLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of MC01g0225 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           +FS  S  +L+G+  SLLILP+VLPPLPPPP +LL VP+ IM LLV LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of MC01g0225 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4   AFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           ++FS  S V+L+G+  SLLILP++LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of MC01g0225 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-06
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 9  RSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPA 62
          RS  +L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of MC01g0225 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-05
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAEDS 64
           +FS  S ++L+ V  SL+ILP+VLPPLPPPP +L+ VPV ++ LL+ LA  P+   +  S
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSS 158

[Close]

BLAST of MC01g0225 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 6.93e-20
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          MVRAFFS RS  MLI VA SLLILP+VLPPLPPPP+LLLFVPVLIM  L+FLA+SPS+VP
Sbjct: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60

Query: 61 AED 63
          AE+
Sbjct: 61 AEE 63

[Close]

BLAST of MC01g0225 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.52e-14
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 62
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MC01g0225 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.52e-14
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 62
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MC01g0225 vs. NCBI nr
Match: KAG2683596.1 (hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothetical protein I3842_10G039100 [Carya illinoinensis] >KAG7958838.1 hypothetical protein I3843_10G039300 [Carya illinoinensis])

HSP 1 Score: 67.0 bits (162), Expect = 7.58e-13
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 5  FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          +FS RS V++I +AVSL+++P++LPPLPPPPLLLLFVPVLIMSLLV LA+S S VP
Sbjct: 4  YFSARSIVVMIVLAVSLVVVPLLLPPLPPPPLLLLFVPVLIMSLLVVLALSSSHVP 59

[Close]

BLAST of MC01g0225 vs. NCBI nr
Match: KAG2687345.1 (hypothetical protein I3760_09G047200 [Carya illinoinensis] >KAG6694413.1 hypothetical protein I3842_09G047400 [Carya illinoinensis] >KAG7962070.1 hypothetical protein I3843_09G047700 [Carya illinoinensis])

HSP 1 Score: 66.2 bits (160), Expect = 1.57e-12
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          M R + S  + V+++ + VSL++LP+V+PPLPPPPLLLLFVPVLIMSLLV LA+SPSQ P
Sbjct: 1  MFRYYMSVGTIVVMVVLTVSLMVLPLVVPPLPPPPLLLLFVPVLIMSLLVVLALSPSQTP 60

[Close]

BLAST of MC01g0225 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.88e-23
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          MVR FFS RS  MLI VAVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEDSH 65
          AE+ H
Sbjct: 61 AEEHH 65

[Close]

BLAST of MC01g0225 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.35e-15
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 62
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MC01g0225 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.35e-15
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 13 MLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPAE 62
          MLI +AVSLLILP+VLPPLPPPP+LLLFVPVLIMSLL+FLA+SPS+ PAE
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAE 50

[Close]

BLAST of MC01g0225 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.93e-13
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MVRAFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
           M+  FFS R+ V+++ + VSLL+LPVVLPPLPPPPL+LLF+P+LIM++L+ LA SPSQ+P
Sbjct: 89  MLVRFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLP 148

[Close]

BLAST of MC01g0225 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.40e-13
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 6  FSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVP 60
          ++ R   +++ + VSLL+LP+VLPPLPPPPLLLLFVPVL+MSLLVFLA++PSQVP
Sbjct: 5  YTVRFITVMLLLTVSLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

[Close]

BLAST of MC01g0225 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4   AFFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           ++FS  S V+L+G+  SLLILP++LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of MC01g0225 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 5   FFSWRSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPS 58
           +FS  S  +L+G+  SLLILP+VLPPLPPPP +LL VP+ IM LLV LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of MC01g0225 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 2.8e-07
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 9  RSAVMLIGVAVSLLILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAMSPSQVPA 62
          RS  +L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of MC01g0225 vs. TAIR 10
Match: AT2G41225.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.0 bits (92), Expect = 8.3e-04
Identity = 23/44 (52.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 12 VMLIGVAVSLL-ILPVVLPPLPPPPLLLLFVPVLIMSLLVFLAM 55
          + +IGV + LL +LP VLPPLPPPP++L+ +PV++M +L++LA+
Sbjct: 1  MFVIGVVMVLLAVLPAVLPPLPPPPMILMGIPVVLMLMLIYLAI 44

The following BLAST results are available for this feature:

BLAST of MC01g0225 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7SFP6	5.4e-08	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q6NMD6	1.6e-07	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q8RXL7	1.6e-07	57.41	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q8RWS1	3.9e-06	56.60	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]
Q7X6L2	1.5e-05	48.33	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]

BLAST of MC01g0225 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603314.1	6.93e-20	79.37	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025988.1	1.52e-14	84.00	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
TYK04223.1	1.52e-14	84.00	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAG2683596.1	7.58e-13	71.43	hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothe...	[more]
KAG2687345.1	1.57e-12	65.00	hypothetical protein I3760_09G047200 [Carya illinoinensis] >KAG6694413.1 hypothe...	[more]

BLAST of MC01g0225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7	5.88e-23	81.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A5D3BWW3	7.35e-15	84.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SII5	7.35e-15	84.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5B7AL58	1.93e-13	63.33	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A2N9F7M5	7.40e-13	69.09	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1	[more]

BLAST of MC01g0225 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	1.1e-08	57.41	ARGOS-like	[more]
AT3G59900.1	1.1e-08	62.26	auxin-regulated gene involved in organ size	[more]
AT2G41230.1	2.8e-07	56.60	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT2G41225.1	8.3e-04	52.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..62
None	No IPR available	PANTHER	PTHR38928:SF8	ARGOS7	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0225.1	MC01g0225.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus