MC01g0200 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0200
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 8362879 .. 8363037 (-)
RNA-Seq Expression	MC01g0200
Synteny	MC01g0200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAGCTCAACACAGACGCAACTTGGAGTAACACCCTCAATGGAGGTGGGATTGATTGGATTCTCCGCGATTGGAAAGGAAATTTCGTCTCTTCAGGATGTCACCACATTCAGAAACAGTGGTCGATCAAAACACTCGAGGGCTTGGCAATTTGCGAA

mRNA sequence

TGGAAGCTCAACACAGACGCAACTTGGAGTAACACCCTCAATGGAGGTGGGATTGATTGGATTCTCCGCGATTGGAAAGGAAATTTCGTCTCTTCAGGATGTCACCACATTCAGAAACAGTGGTCGATCAAAACACTCGAGGGCTTGGCAATTTGCGAA

Coding sequence (CDS)

TGGAAGCTCAACACAGACGCAACTTGGAGTAACACCCTCAATGGAGGTGGGATTGATTGGATTCTCCGCGATTGGAAAGGAAATTTCGTCTCTTCAGGATGTCACCACATTCAGAAACAGTGGTCGATCAAAACACTCGAGGGCTTGGCAATTTGCGAA

Protein sequence

WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE

Homology

[Close]

BLAST of MC01g0200 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 1.40e-09
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNTDA W    N GGI WILRD KG  + + C  I+ + +I  LE +AICE
Sbjct: 87  WKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICE 139

[Close]

BLAST of MC01g0200 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.55e-09
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNTDA W    N  GI WILRD KG  + +GC  I+ + +I  LE +AICE
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICE 280

[Close]

BLAST of MC01g0200 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.77e-09
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNTDA W    N  GI WILRD KG  + +GC  I+ + +I  LE +AICE
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICE 315

[Close]

BLAST of MC01g0200 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 4.85e-09
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNT+A W    N GGI WILRD KG  + + C  I+ + +I  LE +AICE
Sbjct: 87  WKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICE 139

[Close]

BLAST of MC01g0200 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 5.62e-07
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           W LN DA+WS++ + GGI WI+R W G+ V +G   ++   ++K LE  AI E
Sbjct: 79  WTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILE 131

[Close]

BLAST of MC01g0200 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.77e-10
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNTDA W    N GGI WILRD KG  + + C  I+ + +I  LE +AICE
Sbjct: 87  WKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICE 139

[Close]

BLAST of MC01g0200 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.23e-09
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNTDA W    N  GI WILRD KG  + +GC  I+ + +I  LE +AICE
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICE 280

[Close]

BLAST of MC01g0200 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.34e-09
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNTDA W    N  GI WILRD KG  + +GC  I+ + +I  LE +AICE
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICE 315

[Close]

BLAST of MC01g0200 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.35e-09
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           WKLNT+A W    N GGI WILRD KG  + + C  I+ + +I  LE +AICE
Sbjct: 87  WKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICE 139

[Close]

BLAST of MC01g0200 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.72e-07
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 1   WKLNTDATWSNTLNGGGIDWILRDWKGNFVSSGCHHIQKQWSIKTLEGLAICE 53
           W LN DA+WS++ + GGI WI+R W G+ V +G   ++   ++K LE  AI E
Sbjct: 79  WTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILE 131

The following BLAST results are available for this feature:

BLAST of MC01g0200 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g0200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	1.40e-09	52.83	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022154991.1	2.55e-09	52.83	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]
XP_022154990.1	2.77e-09	52.83	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022143535.1	4.85e-09	50.94	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022155262.1	5.62e-07	43.40	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of MC01g0200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	6.77e-10	52.83	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DQC9	1.23e-09	52.83	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DL64	1.34e-09	52.83	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CP26	2.35e-09	50.94	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DNV9	2.72e-07	43.40	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MC01g0200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 4..52 e-value: 1.7E-6 score: 27.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0200.1	MC01g0200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity