MC01g0139 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0139
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Location	MC01: 6953277 .. 6953477 (+)
RNA-Seq Expression	MC01g0139
Synteny	MC01g0139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCAGTCGCTTTCTCGGCAGTGCCATTGACGCTGTACGTGCCGCCGATTCGGAGCCTCAATCTCTTCGTCGAAACCCTAGAGGATCTTCTTCGTCACACTGCCATTCATACGCTCAGAGTTTATCCTCGGTTTCGCATCGCCTTCTCTCGCCTCTTCCGCTCCGTCTTCAGCGCCTCCTATTCT

mRNA sequence

ATGCTTCAGCTGTTCTTCGCAGTCGCTTTCTCGGCAGTGCCATTGACGCTGTACGTGCCGCCGATTCGGAGCCTCAATCTCTTCGTCGAAACCCTAGAGGATCTTCTTCGTCACACTGCCATTCATACGCTCAGAGTTTATCCTCGGTTTCGCATCGCCTTCTCTCGCCTCTTCCGCTCCGTCTTCAGCGCCTCCTATTCT

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCAGTCGCTTTCTCGGCAGTGCCATTGACGCTGTACGTGCCGCCGATTCGGAGCCTCAATCTCTTCGTCGAAACCCTAGAGGATCTTCTTCGTCACACTGCCATTCATACGCTCAGAGTTTATCCTCGGTTTCGCATCGCCTTCTCTCGCCTCTTCCGCTCCGTCTTCAGCGCCTCCTATTCT

Protein sequence

MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRSVFSASYS

Homology

[Close]

BLAST of MC01g0139 vs. NCBI nr
Match: KAA0060071.1 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK29882.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 1.76e-30
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLEDLL HTAIHT+R YPRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSASYS 67
           F  SYS
Sbjct: 61 FFRVSYS 67

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BLAST of MC01g0139 vs. NCBI nr
Match: KAE8649764.1 (hypothetical protein Csa_012384 [Cucumis sativus])

HSP 1 Score: 113 bits (283), Expect = 3.69e-30
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLEDLL HTAIHT+R YPRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSASYS 67
          VF  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MC01g0139 vs. NCBI nr
Match: KAG6603254.1 (hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (267), Expect = 1.55e-28
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSA PLT YVPPIRSLNLFVETLEDL RHTA HT R YPRFR+AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 VFSASYS 67
          VF  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MC01g0139 vs. NCBI nr
Match: KAG7037385.1 (hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107 bits (267), Expect = 1.55e-28
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSA PLT YVPPIRSLNLFVETLEDL RHTA HT R YPRFR+AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 VFSASYS 67
          VF  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MC01g0139 vs. NCBI nr
Match: KAG6595630.1 (hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027603.1 hypothetical protein SDJN02_11617, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (262), Expect = 1.95e-27
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLE+LLR +A HTLRVYPRFR AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60

Query: 61 VFSASYS 67
          +F  S S
Sbjct: 61 IFRVSNS 67

[Close]

BLAST of MC01g0139 vs. ExPASy TrEMBL
Match: A0A5A7V2T5 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001360 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 8.52e-31
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLEDLL HTAIHT+R YPRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSASYS 67
           F  SYS
Sbjct: 61 FFRVSYS 67

[Close]

BLAST of MC01g0139 vs. ExPASy TrEMBL
Match: A0A0A0KZF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 2.00e-30
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLEDLL HTAIHT+R YPRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 VFSASYS 67
          VF  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MC01g0139 vs. ExPASy TrEMBL
Match: A0A218W4I5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr000672 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.17e-26
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLR TA++TLR YPR R+A SR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRQTAVYTLRAYPRVRLACSRIFHS 60

[Close]

BLAST of MC01g0139 vs. ExPASy TrEMBL
Match: A0A2C9V7E1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.77e-26
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLN FVET+EDLLR TA ++LR YPRFR+AFSR+F +
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 VFSAS 65
          +F  S
Sbjct: 61 LFRLS 65

[Close]

BLAST of MC01g0139 vs. ExPASy TrEMBL
Match: A0A6P6AMC9 (uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.10e-25
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLNLFVET+ED+LR T ++TLR YPR R+ FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 VFSAS 65
          +F  S
Sbjct: 61 IFHLS 65

[Close]

BLAST of MC01g0139 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEDLLRHTAIHTLRVYPRFRIAFSRLFRS 60
          MLQLFF +AFSA PLTLY+PPIR L +FVET+E++     +++ R++PR RIA+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VFSAS 66
           FS+S
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of MC01g0139 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g0139 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060071.1	1.76e-30	86.57	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo ...	[more]
KAE8649764.1	3.69e-30	88.06	hypothetical protein Csa_012384 [Cucumis sativus]	[more]
KAG6603254.1	1.55e-28	83.58	hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037385.1	1.55e-28	83.58	hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595630.1	1.95e-27	85.07	hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC01g0139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2T5	8.52e-31	86.57	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis mel...	[more]
A0A0A0KZF7	2.00e-30	88.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
A0A218W4I5	6.17e-26	85.25	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr000672 PE=4 SV=1	[more]
A0A2C9V7E1	8.77e-26	78.46	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
A0A6P6AMC9	1.10e-25	76.92	uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=...	[more]

BLAST of MC01g0139 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	5.3e-14	56.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616:SF5	DIS3-EXONUCLEASE-LIKE PROTEIN	coord: 1..65
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0139.1	MC01g0139.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane