MC01g0124 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0124
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Cytochrome c oxidase subunit 2
Location	MC01: 6378940 .. 6379115 (-)
RNA-Seq Expression	MC01g0124
Synteny	MC01g0124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCTCCTTGTGATGCAGCAGAACCATATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATACAATGAATAATAGACTTACATCACGATATCTTTTTCTTCTTCATTCTGATTTTTGTTTTCGTATCACAGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAA

mRNA sequence

ATTGCTCCTTGTGATGCAGCAGAATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATACAATGAATAATAGACTTACATCACGATATCTTTTTCTTCTTCATTCTGATTTTTGTTTTCGTATCACAGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAA

Coding sequence (CDS)

ATTGCTCCTTGTGATGCAGCAGAATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATACAATGAATAATAGACTTACATCACGATATCTTTTTCTTCTTCATTCTGATTTTTGTTTTCGTATCACAGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAA

Protein sequence

IAPCDAAEWQLGSQDAATPMIQUIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK

Homology

[Close]

BLAST of MC01g0124 vs. ExPASy Swiss-Prot
Match: P08744 (Cytochrome c oxidase subunit 2 OS=Pisum sativum OX=3888 GN=COX2 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-21
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          IAPCDAAE WQLG QDAATPM+Q IIDLHHDIFFF ILI VFVS+ILVRALWHFHYKK
Sbjct: 10 IAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVSRILVRALWHFHYKK 67

[Close]

BLAST of MC01g0124 vs. ExPASy Swiss-Prot
Match: P05491 (Cytochrome c oxidase subunit 2 OS=Glycine max OX=3847 GN=COX2 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-21
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          IAPCDAAE WQLG QDAATPM+Q IIDLHHDIFFF ILI VFVS+ILVRALWHFHYKK
Sbjct: 10 IAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVSRILVRALWHFHYKK 67

[Close]

BLAST of MC01g0124 vs. ExPASy Swiss-Prot
Match: P98012 (Cytochrome c oxidase subunit 2 OS=Beta vulgaris OX=161934 GN=COX2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-20
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          +APCDAAE WQLG QDAATPM+Q IIDLHHDIFFF ILI VFVS ILVRALWHFHYKK
Sbjct: 11 MAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVSWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. ExPASy Swiss-Prot
Match: P27168 (Cytochrome c oxidase subunit 2 OS=Daucus carota OX=4039 GN=COX2 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.4e-20
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 2  APCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          +PCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILI VFVS+ILVRALWHFH KK
Sbjct: 13 SPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILILVFVSRILVRALWHFHSKK 69

[Close]

BLAST of MC01g0124 vs. ExPASy Swiss-Prot
Match: P92559 (Uncharacterized mitochondrial protein AtMg01280 OS=Arabidopsis thaliana OX=3702 GN=AtMg01280 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.4e-20
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          I+PCDAAE WQLGSQDAATP++Q IIDLHHDIFFF ILI VFV  ILVRALWHFHYKK
Sbjct: 11 ISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. NCBI nr
Match: KAA0050494.1 (cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.90e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS+ILVRALWHFHY K
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSK 68

[Close]

BLAST of MC01g0124 vs. NCBI nr
Match: TYK14642.1 (cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 2.06e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS+ILVRALWHFHY K
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSK 68

[Close]

BLAST of MC01g0124 vs. NCBI nr
Match: VFQ93863.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 102 bits (253), Expect = 4.96e-26
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILI VFVS ILVRALWHFHYKK
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILILVFVSWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. NCBI nr
Match: TYK03171.1 (cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 7.26e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS+ILVRALWHFHY K
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSK 68

[Close]

BLAST of MC01g0124 vs. NCBI nr
Match: QJC70929.1 (cytochrome c oxidase subunit 2, partial [Adenocalymma acutissimum] >QJC70930.1 cytochrome c oxidase subunit 2, partial [Adenocalymma acutissimum])

HSP 1 Score: 104 bits (259), Expect = 7.29e-26
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS ILVRALWHFHYKK
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. ExPASy TrEMBL
Match: A0A5A7U5H8 (Cytochrome c oxidase subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001290 PE=3 SV=1)

HSP 1 Score: 103 bits (257), Expect = 9.21e-27
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS+ILVRALWHFHY K
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSK 68

[Close]

BLAST of MC01g0124 vs. ExPASy TrEMBL
Match: A0A5D3CT80 (Cytochrome c oxidase subunit 2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00010 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 9.99e-27
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS+ILVRALWHFHY K
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSK 68

[Close]

BLAST of MC01g0124 vs. ExPASy TrEMBL
Match: A0A484MYE2 (COX2_TM domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS35639 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 2.40e-26
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILI VFVS ILVRALWHFHYKK
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILILVFVSWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. ExPASy TrEMBL
Match: A0A5D3BTX0 (Cytochrome c oxidase subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00600 PE=3 SV=1)

HSP 1 Score: 103 bits (257), Expect = 3.51e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS+ILVRALWHFHY K
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSK 68

[Close]

BLAST of MC01g0124 vs. ExPASy TrEMBL
Match: A0A6M3QZT4 (Cytochrome c oxidase subunit 2 (Fragment) OS=Adenocalymma acutissimum OX=2099405 GN=cox2 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 3.53e-26
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 57
          IAPCDAAE WQLGSQDAATPM+Q IIDLHHDIFFF ILIFVFVS ILVRALWHFHYKK
Sbjct: 11 IAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. TAIR 10
Match: AT2G07695.1 (Cytochrome C oxidase subunit II-like, transmembrane domain )

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-21
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          I+PCDAAE WQLGSQDAATP++Q IIDLHHDIFFF ILI VFV  ILVRALWHFHYKK
Sbjct: 11 ISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. TAIR 10
Match: ATMG00160.1 (cytochrome oxidase 2 )

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-21
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          I+PCDAAE WQLGSQDAATP++Q IIDLHHDIFFF ILI VFV  ILVRALWHFHYKK
Sbjct: 11 ISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKK 68

[Close]

BLAST of MC01g0124 vs. TAIR 10
Match: ATMG01280.1 (Cytochrome C oxidase subunit II-like, transmembrane domain )

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-21
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  IAPCDAAE-WQLGSQDAATPMIQXIIDLHHDIFFFFILIFVFVSQILVRALWHFHYKK 58
          I+PCDAAE WQLGSQDAATP++Q IIDLHHDIFFF ILI VFV  ILVRALWHFHYKK
Sbjct: 11 ISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKK 68

The following BLAST results are available for this feature:

BLAST of MC01g0124 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08744	3.7e-21	87.93	Cytochrome c oxidase subunit 2 OS=Pisum sativum OX=3888 GN=COX2 PE=3 SV=2	[more]
P05491	3.7e-21	87.93	Cytochrome c oxidase subunit 2 OS=Glycine max OX=3847 GN=COX2 PE=3 SV=2	[more]
P98012	1.9e-20	86.21	Cytochrome c oxidase subunit 2 OS=Beta vulgaris OX=161934 GN=COX2 PE=2 SV=1	[more]
P27168	5.4e-20	85.96	Cytochrome c oxidase subunit 2 OS=Daucus carota OX=4039 GN=COX2 PE=3 SV=1	[more]
P92559	5.4e-20	84.48	Uncharacterized mitochondrial protein AtMg01280 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MC01g0124 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050494.1	1.90e-26	89.66	cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa]	[more]
TYK14642.1	2.06e-26	89.66	cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa]	[more]
VFQ93863.1	4.96e-26	89.66	unnamed protein product [Cuscuta campestris]	[more]
TYK03171.1	7.26e-26	89.66	cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa]	[more]
QJC70929.1	7.29e-26	91.38	cytochrome c oxidase subunit 2, partial [Adenocalymma acutissimum] >QJC70930.1 c...	[more]

BLAST of MC01g0124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U5H8	9.21e-27	89.66	Cytochrome c oxidase subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3CT80	9.99e-27	89.66	Cytochrome c oxidase subunit 2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=11...	[more]
A0A484MYE2	2.40e-26	89.66	COX2_TM domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS3...	[more]
A0A5D3BTX0	3.51e-26	89.66	Cytochrome c oxidase subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6M3QZT4	3.53e-26	91.38	Cytochrome c oxidase subunit 2 (Fragment) OS=Adenocalymma acutissimum OX=2099405...	[more]

BLAST of MC01g0124 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07695.1	3.8e-21	84.48	Cytochrome C oxidase subunit II-like, transmembrane domain	[more]
ATMG00160.1	3.8e-21	84.48	cytochrome oxidase 2	[more]
ATMG01280.1	3.8e-21	84.48	Cytochrome C oxidase subunit II-like, transmembrane domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011759	Cytochrome C oxidase subunit II, transmembrane domain	PFAM	PF02790	COX2_TM	coord: 7..56 e-value: 2.2E-10 score: 40.6
IPR036257	Cytochrome C oxidase subunit II, transmembrane domain superfamily	GENE3D	1.10.287.90		coord: 2..56 e-value: 1.4E-10 score: 43.1
IPR036257	Cytochrome C oxidase subunit II, transmembrane domain superfamily	SUPERFAMILY	81464	Cytochrome c oxidase subunit II-like, transmembrane region	coord: 4..55
None	No IPR available	PANTHER	PTHR22888	CYTOCHROME C OXIDASE, SUBUNIT II	coord: 1..53
None	No IPR available	PANTHER	PTHR22888:SF20	CYTOCHROME C OXIDASE SUBUNIT 2	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0124.1	MC01g0124.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004129	cytochrome-c oxidase activity