MC01g0096 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g0096
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionenoyl-CoA delta isomerase 2, peroxisomal-like
LocationMC01: 5733428 .. 5733617 (-)
RNA-Seq ExpressionMC01g0096
SyntenyMC01g0096
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTCAACTCCATTTTTGGTGCTCTTTCCGAAATCAAGGCCAAGACCTCTCATGGCTTCGATCTCATCACAACTTCACATGACAAGTTCTTCTCCAACGACTTCGATCTTTGTCGGGCTCGGACACATGTTTAAGATCTTCAAGCCCGTCGTCCTCGAACTCGTCTCCCTTCCCATGCCTTCCATAGCA

mRNA sequence

ATATTCAACTCCATTTTTGGTGCTCTTTCCGAAATCAAGGCCAAGACCTCTCATGGCTTCGATCTCATCACAACTTCACATGACAAGTTCTTCTCCAACGACTTCGATCTTGTCGGGCTCGGACACATGTTTAAGATCTTCAAGCCCGTCGTCCTCGAACTCGTCTCCCTTCCCATGCCTTCCATAGCA

Coding sequence (CDS)

ATATTCAACTCCATTTTTGGTGCTCTTTCCGAAATCAAGGCCAAGACCTCTCATGGCTTCGATCTCATCACAACTTCACATGACAAGTTCTTCTCCAACGACTTCGATCTTGTCGGGCTCGGACACATGTTTAAGATCTTCAAGCCCGTCGTCCTCGAACTCGTCTCCCTTCCCATGCCTTCCATAGCA

Protein sequence

IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVGLGHMFKIFKPVVLELVSLPMPSIA
Homology
[Close]
BLAST of MC01g0096 vs. ExPASy Swiss-Prot
Match: O23300 (Enoyl-CoA delta isomerase 3 OS=Arabidopsis thaliana OX=3702 GN=ECI3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-07
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 4   SIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLV---GLGH--------MFKIFKPVVL 63
           S+   L + K++++ G  LITT H KFFSN FDL      GH        M K FKPV+ 
Sbjct: 30  SVLSLLEQAKSQSTKGSVLITTGHGKFFSNGFDLAWAQSAGHGAIKRMHQMVKSFKPVLA 89

[Close]
BLAST of MC01g0096 vs. ExPASy Swiss-Prot
Match: O23299 (Enoyl-CoA delta isomerase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ECI2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 4   SIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLV-------------GLGHMFKIFKPV 63
           +I   L + K++++ G  LITT++ KFFSN FDL               L  M + FKPV
Sbjct: 30  TILSLLEQAKSQSTRGSILITTANGKFFSNGFDLAWAQTAGSKTGAANRLHQMVESFKPV 89

[Close]
BLAST of MC01g0096 vs. NCBI nr
Match: XP_022145482.1 (enoyl-CoA delta isomerase 2, peroxisomal-like [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.18e-11
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDL-----VG--------LGHMFKIF 60
           + +SI  ALS+I+A+ S G  LITTSH KFFSN FDL      G        L HM  IF
Sbjct: 27  LIDSILAALSQIRAQASPGSVLITTSHGKFFSNGFDLRWAHAAGSVSAAADRLSHMVHIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KPVV +L+SLPMPSIA
Sbjct: 87  KPVVAQLLSLPMPSIA 102

[Close]
BLAST of MC01g0096 vs. NCBI nr
Match: KAG6582371.1 (Enoyl-CoA delta isomerase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 3.15e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+ + G  LITTSH KFFSN FDL               L H+ +IF
Sbjct: 27  LINSILKALSQVKAQATSGSVLITTSHGKFFSNGFDLPWALAAGSISGARDRLNHIIQIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KP+V +L+SLPMP+IA
Sbjct: 87  KPLVAQLLSLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. NCBI nr
Match: XP_038877355.1 (enoyl-CoA delta isomerase 2, peroxisomal-like [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 3.15e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+   G  LITTSH KFFSN FDL               L H+  IF
Sbjct: 27  LINSILKALSQVKAQAFPGSVLITTSHGKFFSNGFDLPWALTAGSVSAARDRLNHIIDIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KPVV EL+SLPMP+IA
Sbjct: 87  KPVVAELLSLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. NCBI nr
Match: XP_022979202.1 (enoyl-CoA delta isomerase 2, peroxisomal-like [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 4.39e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+ + G  LITTSH KFFSN FDL               L H+ +IF
Sbjct: 27  LINSILKALSQVKAQATPGSVLITTSHGKFFSNGFDLPWALAAGSISGARDRLNHIIQIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KP+V +L+SLPMP+IA
Sbjct: 87  KPLVAQLLSLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. NCBI nr
Match: KAG7018780.1 (Enoyl-CoA delta isomerase 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 7.79e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+ + G  LITTSH KFFSN FDL               L H+ +IF
Sbjct: 463 LINSILKALSQVKAQATSGSVLITTSHGKFFSNGFDLPWALAAGSISGARDRLNHIIQIF 522

Query: 61  KPVVLELVSLPMPSIA 63
           KP+V +L+SLPMP+IA
Sbjct: 523 KPLVAQLLSLPMPTIA 538

[Close]
BLAST of MC01g0096 vs. ExPASy TrEMBL
Match: A0A6J1CWQ4 (enoyl-CoA delta isomerase 2, peroxisomal-like OS=Momordica charantia OX=3673 GN=LOC111014917 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.73e-12
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDL-----VG--------LGHMFKIF 60
           + +SI  ALS+I+A+ S G  LITTSH KFFSN FDL      G        L HM  IF
Sbjct: 27  LIDSILAALSQIRAQASPGSVLITTSHGKFFSNGFDLRWAHAAGSVSAAADRLSHMVHIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KPVV +L+SLPMPSIA
Sbjct: 87  KPVVAQLLSLPMPSIA 102

[Close]
BLAST of MC01g0096 vs. ExPASy TrEMBL
Match: A0A6J1IN54 (enoyl-CoA delta isomerase 2, peroxisomal-like OS=Cucurbita maxima OX=3661 GN=LOC111479008 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.13e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+ + G  LITTSH KFFSN FDL               L H+ +IF
Sbjct: 27  LINSILKALSQVKAQATPGSVLITTSHGKFFSNGFDLPWALAAGSISGARDRLNHIIQIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KP+V +L+SLPMP+IA
Sbjct: 87  KPLVAQLLSLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. ExPASy TrEMBL
Match: A0A0A0L9X4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141770 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.14e-11
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+ S    LITTSH KFFSN FDL               L H+ +IF
Sbjct: 27  LINSILKALSQVKAQASPASVLITTSHGKFFSNGFDLPWALSAGSVSAARHRLNHLIEIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           K VV EL+SLPMP+IA
Sbjct: 87  KSVVAELISLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. ExPASy TrEMBL
Match: A0A6J1E8J9 (enoyl-CoA delta isomerase 2, peroxisomal-like OS=Cucurbita moschata OX=3662 GN=LOC111431761 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.14e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NS+  ALS++KA+ + G  LITTSH KFFSN FDL               L H+ +IF
Sbjct: 27  LINSLLKALSQVKAQATPGSVLITTSHGKFFSNGFDLPWALAAGSISGARDRLNHIIQIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           KP+V +L+SLPMP+IA
Sbjct: 87  KPLVAQLLSLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. ExPASy TrEMBL
Match: A0A1S3AWB3 (enoyl-CoA delta isomerase 2, peroxisomal-like OS=Cucumis melo OX=3656 GN=LOC103483618 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.77e-11
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 1   IFNSIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLVG-------------LGHMFKIF 60
           + NSI  ALS++KA+ S    LITTSH KFFSN FDL               L H+ +IF
Sbjct: 27  LINSILKALSQVKAQASPASVLITTSHGKFFSNGFDLPWALAAGSVSAARHRLNHIIEIF 86

Query: 61  KPVVLELVSLPMPSIA 63
           K VV EL+SLPMP+IA
Sbjct: 87  KSVVAELISLPMPTIA 102

[Close]
BLAST of MC01g0096 vs. TAIR 10
Match: AT4G14440.1 (3-hydroxyacyl-CoA dehydratase 1 )

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-08
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 4   SIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLV---GLGH--------MFKIFKPVVL 63
           S+   L + K++++ G  LITT H KFFSN FDL      GH        M K FKPV+ 
Sbjct: 30  SVLSLLEQAKSQSTKGSVLITTGHGKFFSNGFDLAWAQSAGHGAIKRMHQMVKSFKPVLA 89

[Close]
BLAST of MC01g0096 vs. TAIR 10
Match: AT4G14430.1 (indole-3-butyric acid response 10 )

HSP 1 Score: 50.1 bits (118), Expect = 7.8e-07
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 4   SIFGALSEIKAKTSHGFDLITTSHDKFFSNDFDLV-------------GLGHMFKIFKPV 63
           +I   L + K++++ G  LITT++ KFFSN FDL               L  M + FKPV
Sbjct: 30  TILSLLEQAKSQSTRGSILITTANGKFFSNGFDLAWAQTAGSKTGAANRLHQMVESFKPV 89

The following BLAST results are available for this feature:
BLAST of MC01g0096 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O233004.4e-0745.07Enoyl-CoA delta isomerase 3 OS=Arabidopsis thaliana OX=3702 GN=ECI3 PE=1 SV=1[more]
O232991.1e-0541.10Enoyl-CoA delta isomerase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ECI2... [more]
BLAST of MC01g0096 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145482.11.18e-1155.26enoyl-CoA delta isomerase 2, peroxisomal-like [Momordica charantia][more]
KAG6582371.13.15e-1150.00Enoyl-CoA delta isomerase 3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038877355.13.15e-1152.63enoyl-CoA delta isomerase 2, peroxisomal-like [Benincasa hispida][more]
XP_022979202.14.39e-1150.00enoyl-CoA delta isomerase 2, peroxisomal-like [Cucurbita maxima][more]
KAG7018780.17.79e-1150.00Enoyl-CoA delta isomerase 3, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
BLAST of MC01g0096 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CWQ45.73e-1255.26enoyl-CoA delta isomerase 2, peroxisomal-like OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1IN542.13e-1150.00enoyl-CoA delta isomerase 2, peroxisomal-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A0A0L9X44.14e-1151.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141770 PE=4 SV=1[more]
A0A6J1E8J94.14e-1148.68enoyl-CoA delta isomerase 2, peroxisomal-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A1S3AWB35.77e-1151.32enoyl-CoA delta isomerase 2, peroxisomal-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
BLAST of MC01g0096 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14440.13.2e-0845.073-hydroxyacyl-CoA dehydratase 1 [more]
AT4G14430.17.8e-0741.10indole-3-butyric acid response 10 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g0096.1MC01g0096.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016853 isomerase activity