MC01g0090 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g0090
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
LocationMC01: 5468679 .. 5469247 (-)
RNA-Seq ExpressionMC01g0090
SyntenyMC01g0090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAAAATCACTCCCAAACAGCGCAACAAAATAAAATATATTGACCGGTCAACTGCTCGCGTTAACTCAAATTTAAATCTAAAAAAAAGAGAAGAAACAATAAAGAAGAAAAGAAAAAGGAAAACGAAAAGCCCTTTAGTCACATAAACTTCCTAGTACGCCATTTCCAATTTTGTATCGCGCTCAGTTACAGAGTGTTGAAGGAGCACAGTCCGTGAGAAGAAGAAGAACAGCAACAAAGATTCAACGGGAAGAAATGTCTGCAAGAGGAAAGCGAAAGGATGACGATGAACACGCATCCGAAGGGGACGCTCCTCCCAAGAAGACATCGAAGAAAGACTCTGACGAAACCGACGAAATCGTCGTCTGCGAGGTCTTTCTCCCCTTCCTCAACTCCCTGTGTTCTTAGCATCCTTACGGTTTTTTCAACATTTTAATTGATTTTTGTATTCTAGATTTCGAAAAATCGGAGGGTTATGGTGAGGAACTGGCAGGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGGAAGCAGATGCCTGGAAAAAAAGGTTCATCT

mRNA sequence

GTCAAAATCACTCCCAAACAGCGCAACAAAATAAAATATATTGACCGGTCAACTGCTCGCGTTAACTCAAATTTAAATCTAAAAAAAAGAGAAGAAACAATAAAGAAGAAAAGAAAAAGGAAAACGAAAAGCCCTTTAGTCACATAAACTTCCTAGTACGCCATTTCCAATTTTGTATCGCGCTCAGTTACAGAGTGTTGAAGGAGCACAGTCCGTGAGAAGAAGAAGAACAGCAACAAAGATTCAACGGGAAGAAATGTCTGCAAGAGGAAAGCGAAAGGATGACGATGAACACGCATCCGAAGGGGACGCTCCTCCCAAGAAGACATCGAAGAAAGACTCTGACGAAACCGACGAAATCGTCGTCTGCGAGATTTCGAAAAATCGGAGGGTTATGGTGAGGAACTGGCAGGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGGAAGCAGATGCCTGGAAAAAAAGGTTCATCT

Coding sequence (CDS)

ATGTCTGCAAGAGGAAAGCGAAAGGATGACGATGAACACGCATCCGAAGGGGACGCTCCTCCCAAGAAGACATCGAAGAAAGACTCTGACGAAACCGACGAAATCGTCGTCTGCGAGATTTCGAAAAATCGGAGGGTTATGGTGAGGAACTGGCAGGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGGAAGCAGATGCCTGGAAAAAAAGGTTCATCT

Protein sequence

MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGSS
Homology
BLAST of MC01g0090 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.6e-21
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGD----APPKKTSK--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD+D  AS+ +    AP KK +K   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGSS 78
          I +DIREFYVKDGK +PGKKG S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

BLAST of MC01g0090 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 25/72 (34.72%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 6   KRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVK 65
           + +D D+   +G+        K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y K
Sbjct: 75  EEEDGDKDCGKGN--------KEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKK 134

Query: 66  DGKQMPGKKGSS 78
           DGK++P  KG S
Sbjct: 135 DGKELPTSKGIS 138

BLAST of MC01g0090 vs. NCBI nr
Match: XP_022149411.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Momordica charantia])

HSP 1 Score: 149 bits (377), Expect = 3.71e-45
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

BLAST of MC01g0090 vs. NCBI nr
Match: XP_022149410.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Momordica charantia])

HSP 1 Score: 149 bits (377), Expect = 6.02e-45
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

BLAST of MC01g0090 vs. NCBI nr
Match: KAG7033606.1 (RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144 bits (363), Expect = 6.65e-43
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDD++H SEGDAPPKKT +KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGKQMPGKKGSS
Sbjct: 61 EFYVKDGKQMPGKKGSS 77

BLAST of MC01g0090 vs. NCBI nr
Match: XP_023518433.1 (RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo] >KAG6595609.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143 bits (361), Expect = 1.51e-42
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDD++HASEGDAPPKKT KKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTFKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGK+MPGKKG S
Sbjct: 61 EFYVKDGKEMPGKKGIS 77

BLAST of MC01g0090 vs. NCBI nr
Match: XP_022925285.1 (RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita moschata])

HSP 1 Score: 142 bits (357), Expect = 6.17e-42
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDD++HASEGDAPPKKT KKDS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGK+MPGKKG S
Sbjct: 61 EFYVKDGKEMPGKKGIS 77

BLAST of MC01g0090 vs. ExPASy TrEMBL
Match: A0A6J1D8A4 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1)

HSP 1 Score: 149 bits (377), Expect = 1.79e-45
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

BLAST of MC01g0090 vs. ExPASy TrEMBL
Match: A0A6J1D5M3 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.92e-45
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

BLAST of MC01g0090 vs. ExPASy TrEMBL
Match: A0A6J1HRT2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466134 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 2.99e-42
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDD++HASEGDAPPKKT KKDS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTFKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGK+MPGKKG S
Sbjct: 61 EFYVKDGKEMPGKKGFS 77

BLAST of MC01g0090 vs. ExPASy TrEMBL
Match: A0A6J1EHI0 (RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX=3662 GN=LOC111432568 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 2.99e-42
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDD++HASEGDAPPKKT KKDS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGK+MPGKKG S
Sbjct: 61 EFYVKDGKEMPGKKGIS 77

BLAST of MC01g0090 vs. ExPASy TrEMBL
Match: A0A6J1EYI2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439635 PE=3 SV=1)

HSP 1 Score: 139 bits (351), Expect = 2.69e-41
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
          MSARGKRKDD++H  EGDAPPKKT +KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1  MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61 EFYVKDGKQMPGKKGSS 77
          EFYVKDGKQMPGKKG S
Sbjct: 61 EFYVKDGKQMPGKKGIS 77

BLAST of MC01g0090 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 100.5 bits (249), Expect = 6.1e-22
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGD----APPKKTSK--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD+D  AS+ +    AP KK +K   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGSS 78
          I +DIREFYVKDGK +PGKKG S
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGIS 83

BLAST of MC01g0090 vs. TAIR 10
Match: AT5G09250.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 100.1 bits (248), Expect = 8.0e-22
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 1  MSARGKRKDDDEHASEGD----APPKKTSK--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRKD+D  AS+ +    AP KK +K   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKGS 77
          I +DIREFYVKDGK +PGKKG+
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGN 82

BLAST of MC01g0090 vs. TAIR 10
Match: AT5G09240.3 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-12
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 1  MSARGKRKD------DDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKD      DD   SE  APPKK + K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKVA-KPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP 72
          I + IR+F+VKDG  +P
Sbjct: 61 IWIAIRQFFVKDGITLP 76

BLAST of MC01g0090 vs. TAIR 10
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-12
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MSARGKRKD------DDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKD      DD   SE  APPKK + K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKVA-KPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP--GKKGSS 78
          I + IR+F+VKDG  +P   K+G S
Sbjct: 61 IWIAIRQFFVKDGITLPCNSKQGIS 84

BLAST of MC01g0090 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-12
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MSARGKRKD------DDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS  GKRKD      DD   SE  APPKK + K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1  MSENGKRKDEDVRASDDRDESETHAPPKKVA-KPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61 IVVDIREFYVKDGKQMP--GKKGSS 78
          I + IR+F+VKDG  +P   K+G S
Sbjct: 61 IWIAIRQFFVKDGITLPCNSKQGIS 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O651548.6e-2166.27RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37... [more]
O651556.0e-0634.72RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
XP_022149411.13.71e-4598.70RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Momordica ch... [more]
XP_022149410.16.02e-4598.70RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Momordica ch... [more]
KAG7033606.16.65e-4393.51RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp... [more]
XP_023518433.11.51e-4293.51RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. p... [more]
XP_022925285.16.17e-4292.21RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1D8A41.79e-4598.70RNA polymerase II transcriptional coactivator KIWI-like isoform X2 OS=Momordica ... [more]
A0A6J1D5M32.92e-4598.70RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica ... [more]
A0A6J1HRT22.99e-4292.21RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
A0A6J1EHI02.99e-4292.21RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX... [more]
A0A6J1EYI22.69e-4190.91RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
Match NameE-valueIdentityDescription
AT5G09250.16.1e-2266.27ssDNA-binding transcriptional regulator [more]
AT5G09250.28.0e-2265.85ssDNA-binding transcriptional regulator [more]
AT5G09240.34.4e-1250.65ssDNA-binding transcriptional regulator [more]
AT5G09240.24.4e-1249.41ssDNA-binding transcriptional regulator [more]
AT5G09240.14.4e-1249.41ssDNA-binding transcriptional regulator [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4), C-terminalPFAMPF02229PC4coord: 38..75
e-value: 7.2E-16
score: 57.6
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10Transcriptional Coactivator Pc4; Chain Acoord: 25..77
e-value: 1.0E-16
score: 62.3
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILY54447ssDNA-binding transcriptional regulator domaincoord: 37..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR13215:SF9BNAC09G47220D PROTEINcoord: 1..77
IPR045125RNA polymerase II transcriptional coactivator Sub1/Tcp4-likePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g0090.1MC01g0090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription regulator complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity