MC01g0088 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC01g0088
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 5399788 .. 5400023 (-)
RNA-Seq ExpressionMC01g0088
SyntenyMC01g0088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTCCACCCCGATTTGGATCCCTCCTTCTGATGGGTTCTTCAAGCTGAATGTTGACGCTGCTTGCAGGGATACCTATACTGGCTTCGGTCTCATCCTTCAAAACTCCCAACAATTCATTATTGTAACTAAATCTAAGCCTTAAATGTCAATCTCCCTCCCCTGCTTGACGAATTGGAGGTGATAATTGAAGGGTTCAAGTTCGCCAAAGATCTCAACTGCCCTAATTTACAGGTT

mRNA sequence

ACCTCCACCCCGATTTGGATCCCTCCTTCTGATGGGTTCTTCAAGCTGAATGTTGACGCTGCTTGCAGGGATACCTATACTGGCTTCGGTCTCATCCTTCAAAACTCCCAACAATTCATTATTGTAACTAAATCTAAGTTAAATGTCAATCTCCCTCCCCTGCTTGACGAATTGGAGGTGATAATTGAAGGGTTCAAGTTCGCCAAAGATCTCAACTGCCCTAATTTACAGGTT

Coding sequence (CDS)

ACCTCCACCCCGATTTGGATCCCTCCTTCTGATGGGTTCTTCAAGCTGAATGTTGACGCTGCTTGCAGGGATACCTATACTGGCTTCGGTCTCATCCTTCAAAACTCCCAACAATTCATTATTGTAACTAAATCTAAGTTAAATGTCAATCTCCCTCCCCTGCTTGACGAATTGGAGGTGATAATTGAAGGGTTCAAGTTCGCCAAAGATCTCAACTGCCCTAATTTACAGGTT

Protein sequence

TSTPIWIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSKLNVNLPPLLDELEVIIEGFKFAKDLNCPNLQV
Homology
BLAST of MC01g0088 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.31e-07
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 6   WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSK-LNVNLPPLLDELEVIIEG 65
           W+PP D   K+N DAACR T TG GLI+++    ++V KS  L + L PL  E+  I+E 
Sbjct: 115 WLPPRDSAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEA 174

Query: 66  FKFAKDLNCPNLQV 78
            K A   +   L V
Sbjct: 175 LKLAASRSYTRLVV 188

BLAST of MC01g0088 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 1.95e-07
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 6    WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQ-QFIIVTKSKLNVNLPPLLDELEVIIEG 65
            W P S    KLN DAACR   T FG I+++S    +  T  ++   L PLL E+  I+EG
Sbjct: 1294 WRPSSSVSLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEG 1353

Query: 66   FKFAKDLNCPNLQV 78
             KFA   N  +L+V
Sbjct: 1354 LKFAAASNFTHLEV 1367

BLAST of MC01g0088 vs. NCBI nr
Match: XP_021852886.1 (uncharacterized protein LOC110792393 [Spinacia oleracea])

HSP 1 Score: 50.8 bits (120), Expect = 1.39e-05
Identity = 32/74 (43.24%), Postives = 39/74 (52.70%), Query Frame = 0

Query: 7   IPPSDGFFKLNVDAACR--DTYTGFGLILQNSQQFIIVTKSKLNVNLPPLLDELEVIIEG 66
           +PPS GF KLN DAA R  D   G G+       +I+   SK NVN  PL  EL  I EG
Sbjct: 31  LPPSQGFIKLNTDAAWRSKDLACGGGVFRSIFGSWILGYSSKFNVN-TPLAAELYAIREG 90

Query: 67  FKFAKDLNCPNLQV 78
              AKD  C  +++
Sbjct: 91  LVIAKDHMCNKVEI 103

BLAST of MC01g0088 vs. NCBI nr
Match: MCI07855.1 (ribonuclease H protein [Trifolium medium])

HSP 1 Score: 48.1 bits (113), Expect = 4.79e-05
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 0

Query: 6  WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSKLNVNLPPLLDELEVIIEGF 65
          W PPS+G+  LN+D ACRD   GFG IL+      +   SKL       + EL  ++EG 
Sbjct: 14 WNPPSEGWVCLNIDGACRDGVIGFGGILRGRDVEWLRGLSKLIGRGDAYIAELWDLLEGL 73

Query: 66 KFAKDLN 72
          + A+ +N
Sbjct: 74 RLARRIN 80

BLAST of MC01g0088 vs. NCBI nr
Match: XP_031121223.1 (uncharacterized protein LOC116024469 [Ipomoea triloba])

HSP 1 Score: 50.4 bits (119), Expect = 5.79e-05
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 0

Query: 2   STPIWIPPSDGFFKLNVDAACRDTYTGFGLILQNSQ-QFIIVTKSKLNVNLPPLLDELEV 61
           S  +W PP +G+ K NVD + R++  G+G +L+N Q QF+     +L  +  P L E   
Sbjct: 91  SHAVWHPPPEGWVKCNVDVSLRESSMGYGAVLRNHQGQFVAALSGRLFCDRDPYLAESIA 150

Query: 62  IIEGFKFAKDLNCPNL 76
           + E   + KD    N+
Sbjct: 151 VKEALTWLKDRGTENV 166

BLAST of MC01g0088 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.35e-08
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 6   WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSK-LNVNLPPLLDELEVIIEG 65
           W+PP D   K+N DAACR T TG GLI+++    ++V KS  L + L PL  E+  I+E 
Sbjct: 115 WLPPRDSAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEA 174

Query: 66  FKFAKDLNCPNLQV 78
            K A   +   L V
Sbjct: 175 LKLAASRSYTRLVV 188

BLAST of MC01g0088 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.42e-08
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 6    WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQ-QFIIVTKSKLNVNLPPLLDELEVIIEG 65
            W P S    KLN DAACR   T FG I+++S    +  T  ++   L PLL E+  I+EG
Sbjct: 1294 WRPSSSVSLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEG 1353

Query: 66   FKFAKDLNCPNLQV 78
             KFA   N  +L+V
Sbjct: 1354 LKFAAASNFTHLEV 1367

BLAST of MC01g0088 vs. ExPASy TrEMBL
Match: A0A392PAD8 (Ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.32e-05
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 0

Query: 6  WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSKLNVNLPPLLDELEVIIEGF 65
          W PPS+G+  LN+D ACRD   GFG IL+      +   SKL       + EL  ++EG 
Sbjct: 14 WNPPSEGWVCLNIDGACRDGVIGFGGILRGRDVEWLRGLSKLIGRGDAYIAELWDLLEGL 73

Query: 66 KFAKDLN 72
          + A+ +N
Sbjct: 74 RLARRIN 80

BLAST of MC01g0088 vs. ExPASy TrEMBL
Match: A0A1J6KT82 (RNase H domain-containing protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_57124 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.90e-05
Identity = 27/73 (36.99%), Postives = 38/73 (52.05%), Query Frame = 0

Query: 6   WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSKLNVNLPPLLDELEVIIEGF 65
           WIPP D F+KLN D AC DT T  G I++NS+   I+  +        +  EL  ++ G 
Sbjct: 33  WIPPKDNFYKLNTDGACTDTTTDTGGIIRNSKAEWILGFATAIPRDTSMSAELHALLLGL 92

Query: 66  KFAKDLNCPNLQV 78
             A + N   L+V
Sbjct: 93  TLAHEHNLKPLEV 105

BLAST of MC01g0088 vs. ExPASy TrEMBL
Match: A0A2P5D4Z5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_262320 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.66e-05
Identity = 21/71 (29.58%), Postives = 37/71 (52.11%), Query Frame = 0

Query: 6   WIPPSDGFFKLNVDAACRDTYTGFGLILQNSQQFIIVTKSKLNVNLPPLLDELEVIIEGF 65
           W+PP   + K+NVD A RD +     + ++ +   +  ++   +N  PLL E   ++ GF
Sbjct: 251 WLPPPSQWIKINVDVAIRDVFAVGAAVARDDRSTFLALRTSQLLNPDPLLSEANAMLLGF 310

Query: 66  KFAKDLNCPNL 76
           K A+D    N+
Sbjct: 311 KLARDHRFKNI 321

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022131661.11.31e-0741.89uncharacterized protein LOC111004786 [Momordica charantia][more]
XP_022158377.11.95e-0741.89uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_021852886.11.39e-0543.24uncharacterized protein LOC110792393 [Spinacia oleracea][more]
MCI07855.14.79e-0538.81ribonuclease H protein [Trifolium medium][more]
XP_031121223.15.79e-0532.89uncharacterized protein LOC116024469 [Ipomoea triloba][more]
Match NameE-valueIdentityDescription
A0A6J1BQ496.35e-0841.89uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1DX309.42e-0841.89uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A392PAD82.32e-0538.81Ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A0A1J6KT822.90e-0536.99RNase H domain-containing protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=... [more]
A0A2P5D4Z58.66e-0529.58Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_262320 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC01g0088.1MC01g0088.1mRNA