MC00g_new0934 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0934
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Locationscaffold58: 812760 .. 813395 (+)
RNA-Seq ExpressionMC00g_new0934
SyntenyMC00g_new0934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCGCTCCAACTACGAGGGTATCTGAGGCCCTGGTCAAAGAGTTTTATGCTGCCATCAATCCCAACCGAGGGGATGTAGTGAGAATACGAGGTAAAGTGGTAAAATTTTCCCCTTCCATTATTAATACTCACTATGGTTTGTTAGATATCTTCAATACCATAGGTAATGAGATTTTGGTGTATCCATCGGACGAGCAAGTGGAGGAGGACCGTCTCAACCACGGGGAAGTTTTCCTTAAAGCCCCTTGACATCAATGAGCAAGCAAAGGTTTGGTCAAGTTGATCCCCACTTATCACGATTCCTCCATTAAGCACAATAGGGCTATGATGGTGTACATCCTCATGAAGGGCATTGAGTTCAACTTTGAGGAGCTCATAAAAAACGAGATTCGAATTTGCTCGGAGAAAATGGTAGGTCCCCTTGTTTTTCCTGGACTAATAACCGAGTTATGTTTGCAGGCGAGATTGGAGGCCGATGATACGAATGTCGTGACACCCAAGAAGCCGGTCACATCTCTAAGGCGAGTTCGGGGATATTCGATTGTTCGAGAGGAAGATTATCCCATTATCGCTGCAGATCCCGAGACCCGAGGAGTGGTGACTAAGGAGCAATATGACGAGTTTAGGTAG

mRNA sequence

ATGTTGTTCGCTCCAACTACGAGGGTATCTGAGGCCCTGGTCAAAGAGTTTTATGCTGCCATCAATCCCAACCGAGGGGATGTAGTGAGAATACGAGGTAAAGTGGTAAAATTTTCCCCTTCCATTATTAATACTCACTATGGTTTGTTAGATATCTTCAATACCATAGCAAGCAAAGGTTTGGTCAAGTTGATCCCCACTTATCACGATTCCTCCATTAAGCACAATAGGGCTATGATGGTGTACATCCTCATGAAGGGCATTGAGTTCAACTTTGAGGAGCTCATAAAAAACGAGATTCGAATTTGCTCGGAGAAAATGGTAGGTCCCCTTGTTTTTCCTGGACTAATAACCGAGTTATGTTTGCAGGCGAGATTGGAGGCCGATGATACGAATGTCGTGACACCCAAGAAGCCGGTCACATCTCTAAGGCGAGTTCGGGGATATTCGATTGTTCGAGAGGAAGATTATCCCATTATCGCTGCAGATCCCGAGACCCGAGGAGTGGTGACTAAGGAGCAATATGACGAGTTTAGGTAG

Coding sequence (CDS)

ATGTTGTTCGCTCCAACTACGAGGGTATCTGAGGCCCTGGTCAAAGAGTTTTATGCTGCCATCAATCCCAACCGAGGGGATGTAGTGAGAATACGAGGTAAAGTGGTAAAATTTTCCCCTTCCATTATTAATACTCACTATGGTTTGTTAGATATCTTCAATACCATAGCAAGCAAAGGTTTGGTCAAGTTGATCCCCACTTATCACGATTCCTCCATTAAGCACAATAGGGCTATGATGGTGTACATCCTCATGAAGGGCATTGAGTTCAACTTTGAGGAGCTCATAAAAAACGAGATTCGAATTTGCTCGGAGAAAATGGTAGGTCCCCTTGTTTTTCCTGGACTAATAACCGAGTTATGTTTGCAGGCGAGATTGGAGGCCGATGATACGAATGTCGTGACACCCAAGAAGCCGGTCACATCTCTAAGGCGAGTTCGGGGATATTCGATTGTTCGAGAGGAAGATTATCCCATTATCGCTGCAGATCCCGAGACCCGAGGAGTGGTGACTAAGGAGCAATATGACGAGTTTAGGTAG

Protein sequence

MLFAPTTRVSEALVKEFYAAINPNRGDVVRIRGKVVKFSPSIINTHYGLLDIFNTIASKGLVKLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKMVGPLVFPGLITELCLQARLEADDTNVVTPKKPVTSLRRVRGYSIVREEDYPIIAADPETRGVVTKEQYDEFR
Homology
[Close]
BLAST of MC00g_new0934 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 191 bits (484), Expect = 2.10e-52
Identity = 113/203 (55.67%), Postives = 129/203 (63.55%), Query Frame = 0 

Query: 2    LFAPTTRVSEALVKEFYAAINPNRGDVVRIRGKVVKFSPS----------IINTH----- 61
            LFAP TRVSEALVKEFY AINPNRGD VR+RG  +   PS          I   H     
Sbjct: 1156 LFAPITRVSEALVKEFYTAINPNRGDEVRVRGNEILVHPSDEQVEEARRLICRPHKTWTI 1215

Query: 62   --YGLLDI----FNTIASKGLV----KLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELI 121
               G L +     N  A+  +     +LIPT +DSSIK NRAM+VYIL+KG+EFNF ELI
Sbjct: 1216 STMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIKRNRAMIVYILVKGVEFNFGELI 1275

Query: 122  KNEIRICSEKMVGPLVFPGLITELCLQARLEADDTNVVTPKKPVTSLRRVRGYSIVREED 179
            +NEI+ CSEK+ G                +EA D NVV PKKP  SLR+VRGYSIVREED
Sbjct: 1276 RNEIQSCSEKLAG----------------VEAADANVVMPKKPFRSLRKVRGYSIVREED 1335

[Close]
BLAST of MC00g_new0934 vs. NCBI nr
Match: XP_022159289.1 (uncharacterized protein LOC111025702 [Momordica charantia])

HSP 1 Score: 164 bits (416), Expect = 3.91e-48
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 0 

Query: 64  LIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKMVGPLVFPGLITELCLQ 123
           LI T +DSSI+  R M+VYILMKGIEFNF ELI+NEI +C+EKMVGPL+FP  I ELCL+
Sbjct: 10  LISTSYDSSIQQIRVMIVYILMKGIEFNFSELIRNEIWVCAEKMVGPLIFPARIMELCLK 69

Query: 124 ARLEADDTNVVTPKKPVTSLRRVRGYSIVREEDYPIIAADPETRGVVTKEQYDEF 178
           A +EAD  +VV  KK  TS+RRVRGY IVREED PI AADP+TRGVVT+EQYDE+
Sbjct: 70  AGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDTRGVVTREQYDEY 124

[Close]
BLAST of MC00g_new0934 vs. NCBI nr
Match: KOM45579.1 (hypothetical protein LR48_Vigan06g088500 [Vigna angularis])

HSP 1 Score: 66.6 bits (161), Expect = 2.82e-09
Identity = 38/136 (27.94%), Postives = 68/136 (50.00%), Query Frame = 0 

Query: 12  ALVKEFYAAI-----NPNRGDVVRIRGKVVKFSPSIINTHYGLLDIFNTIASKGLVKLIP 71
           A+VKEFY        +PN   +  +RG ++++    IN    L  +     +     + P
Sbjct: 89  AVVKEFYTNARQLGDHPNEEYMSYVRGHIIQYDLDAINRRADLTPLAKYWMAFSHANIQP 148

Query: 72  TYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKM--VGPLVFPGLITELCLQA 131
             H S I  +RA+++Y +++G+  N  ++I N+I++C+  M    PL  P LIT LC  A
Sbjct: 149 YSHVSDITVSRALLLYCVLRGMSINIGQVIANDIQVCANTMDNKAPLGNPSLITHLCELA 208

Query: 132 RLEADDTNVVTPKKPV 140
            +     ++  P+K +
Sbjct: 209 GVNISTPSLERPRKAI 224

[Close]
BLAST of MC00g_new0934 vs. NCBI nr
Match: RYQ91580.1 (hypothetical protein Ahy_B09g097531 [Arachis hypogaea])

HSP 1 Score: 62.0 bits (149), Expect = 1.31e-08
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 0 

Query: 1   MLFAPTTRVSEALVKEFYAAINPNRGD----VVRIRGKVVKFSPSIINTHYGLLD-IFNT 60
           +L  P  +V E+LV+EFYA   P  G     +  +RGK + +SPS I     L+D I N 
Sbjct: 28  LLCNPPRKVVESLVREFYANDVPQPGQHYGYISYVRGKSIDYSPSSIERM--LMDGISNQ 87

Query: 61  IASKGLV-----KLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRIC 103
           +  + L       LIPT + S +   RA+++YI+MKG   N  E+I N I  C
Sbjct: 88  LRRRDLSPQARGSLIPTSNTSEVTKERAVLIYIIMKGENVNVGEMIANNINKC 138

[Close]
BLAST of MC00g_new0934 vs. NCBI nr
Match: KOM41071.1 (hypothetical protein LR48_Vigan04g126900 [Vigna angularis])

HSP 1 Score: 63.5 bits (153), Expect = 2.70e-08
Identity = 40/141 (28.37%), Postives = 65/141 (46.10%), Query Frame = 0 

Query: 7   TRVSEALVKEFYAAI-----NPNRGDVVRIRGKVVKFSPSIINTHYGLLDIFNTIASKGL 66
           T  + A+VKEFY        +P    +  +RG  + +    IN    L  +     +   
Sbjct: 32  TSANLAVVKEFYTNARKLGDHPTEEYMSYVRGHTIWYDLDSINRRADLTPLAKYWMTFSH 91

Query: 67  VKLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKM--VGPLVFPGLITE 126
             + P  H S I  +RA+++Y +MKG+  N  ++I NEI++C+  M    PL  P L+T 
Sbjct: 92  ANIRPCSHVSDITVSRALLLYCVMKGMSINIGQVIANEIQVCANTMNNKAPLGHPSLVTH 151

Query: 127 LCLQARLEADDTNVVTPKKPV 140
           LC  A +         P+K +
Sbjct: 152 LCGLAGVNISTLLFERPRKEI 172

[Close]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 191 bits (484), Expect = 1.02e-52
Identity = 113/203 (55.67%), Postives = 129/203 (63.55%), Query Frame = 0 

Query: 2    LFAPTTRVSEALVKEFYAAINPNRGDVVRIRGKVVKFSPS----------IINTH----- 61
            LFAP TRVSEALVKEFY AINPNRGD VR+RG  +   PS          I   H     
Sbjct: 1156 LFAPITRVSEALVKEFYTAINPNRGDEVRVRGNEILVHPSDEQVEEARRLICRPHKTWTI 1215

Query: 62   --YGLLDI----FNTIASKGLV----KLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELI 121
               G L +     N  A+  +     +LIPT +DSSIK NRAM+VYIL+KG+EFNF ELI
Sbjct: 1216 STMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIKRNRAMIVYILVKGVEFNFGELI 1275

Query: 122  KNEIRICSEKMVGPLVFPGLITELCLQARLEADDTNVVTPKKPVTSLRRVRGYSIVREED 179
            +NEI+ CSEK+ G                +EA D NVV PKKP  SLR+VRGYSIVREED
Sbjct: 1276 RNEIQSCSEKLAG----------------VEAADANVVMPKKPFRSLRKVRGYSIVREED 1335

[Close]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match: A0A6J1E204 (uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025702 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 1.89e-48
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 0 

Query: 64  LIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKMVGPLVFPGLITELCLQ 123
           LI T +DSSI+  R M+VYILMKGIEFNF ELI+NEI +C+EKMVGPL+FP  I ELCL+
Sbjct: 10  LISTSYDSSIQQIRVMIVYILMKGIEFNFSELIRNEIWVCAEKMVGPLIFPARIMELCLK 69

Query: 124 ARLEADDTNVVTPKKPVTSLRRVRGYSIVREEDYPIIAADPETRGVVTKEQYDEF 178
           A +EAD  +VV  KK  TS+RRVRGY IVREED PI AADP+TRGVVT+EQYDE+
Sbjct: 70  AGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDTRGVVTREQYDEY 124

[Close]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match: A0A0L9USR6 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g088500 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.36e-09
Identity = 38/136 (27.94%), Postives = 68/136 (50.00%), Query Frame = 0 

Query: 12  ALVKEFYAAI-----NPNRGDVVRIRGKVVKFSPSIINTHYGLLDIFNTIASKGLVKLIP 71
           A+VKEFY        +PN   +  +RG ++++    IN    L  +     +     + P
Sbjct: 89  AVVKEFYTNARQLGDHPNEEYMSYVRGHIIQYDLDAINRRADLTPLAKYWMAFSHANIQP 148

Query: 72  TYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKM--VGPLVFPGLITELCLQA 131
             H S I  +RA+++Y +++G+  N  ++I N+I++C+  M    PL  P LIT LC  A
Sbjct: 149 YSHVSDITVSRALLLYCVLRGMSINIGQVIANDIQVCANTMDNKAPLGNPSLITHLCELA 208

Query: 132 RLEADDTNVVTPKKPV 140
            +     ++  P+K +
Sbjct: 209 GVNISTPSLERPRKAI 224

[Close]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match: A0A444XPB6 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g097531 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.34e-09
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 0 

Query: 1   MLFAPTTRVSEALVKEFYAAINPNRGD----VVRIRGKVVKFSPSIINTHYGLLD-IFNT 60
           +L  P  +V E+LV+EFYA   P  G     +  +RGK + +SPS I     L+D I N 
Sbjct: 28  LLCNPPRKVVESLVREFYANDVPQPGQHYGYISYVRGKSIDYSPSSIERM--LMDGISNQ 87

Query: 61  IASKGLV-----KLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRIC 103
           +  + L       LIPT + S +   RA+++YI+MKG   N  E+I N I  C
Sbjct: 88  LRRRDLSPQARGSLIPTSNTSEVTKERAVLIYIIMKGENVNVGEMIANNINKC 138

[Close]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match: A0A0L9UEE0 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g126900 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.31e-08
Identity = 40/141 (28.37%), Postives = 65/141 (46.10%), Query Frame = 0 

Query: 7   TRVSEALVKEFYAAI-----NPNRGDVVRIRGKVVKFSPSIINTHYGLLDIFNTIASKGL 66
           T  + A+VKEFY        +P    +  +RG  + +    IN    L  +     +   
Sbjct: 32  TSANLAVVKEFYTNARKLGDHPTEEYMSYVRGHTIWYDLDSINRRADLTPLAKYWMTFSH 91

Query: 67  VKLIPTYHDSSIKHNRAMMVYILMKGIEFNFEELIKNEIRICSEKM--VGPLVFPGLITE 126
             + P  H S I  +RA+++Y +MKG+  N  ++I NEI++C+  M    PL  P L+T 
Sbjct: 92  ANIRPCSHVSDITVSRALLLYCVMKGMSINIGQVIANEIQVCANTMNNKAPLGHPSLVTH 151

Query: 127 LCLQARLEADDTNVVTPKKPV 140
           LC  A +         P+K +
Sbjct: 152 LCGLAGVNISTLLFERPRKEI 172

The following BLAST results are available for this feature:
BLAST of MC00g_new0934 vs.
Match NameE-valueIdentityDescription
BLAST of MC00g_new0934 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154847.12.10e-5255.67LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia][more]
XP_022159289.13.91e-4870.43uncharacterized protein LOC111025702 [Momordica charantia][more]
KOM45579.12.82e-0927.94hypothetical protein LR48_Vigan06g088500 [Vigna angularis][more]
RYQ91580.11.31e-0837.17hypothetical protein Ahy_B09g097531 [Arachis hypogaea][more]
KOM41071.12.70e-0828.37hypothetical protein LR48_Vigan04g126900 [Vigna angularis][more]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DMT31.02e-5255.67LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia... [more]
A0A6J1E2041.89e-4870.43uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A0L9USR61.36e-0927.94Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g088500 PE... [more]
A0A444XPB66.34e-0937.17Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g097531 PE=4 SV=1[more]
A0A0L9UEE01.31e-0828.37Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g126900 PE... [more]
BLAST of MC00g_new0934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g_new0934.1MC00g_new0934.1mRNA