MC00g_new0677 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0677
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Locationscaffold31: 437676 .. 441892 (-)
RNA-Seq ExpressionMC00g_new0677
SyntenyMC00g_new0677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTGTATAAGTGAATGACAATACCTCCATTAGTATAAGACACTCAAGTAAAATCAAAACAAAGTCACGAGGATTTATATCCTAAAGAAGACGACAACAATACATTATGGAGGATTTTGTTTTCCTAACAAGTAGATATAAGAATCATGGGGCGTCAAATAAAGAAGTCATGCATTATAAACTTTTTAAAGTAATGAATGAGACTAAATAGATGCAATCCTAAAAGTTAAGAATATCTGTTATAAAATTTGAAAAATAGCTAAAGTAAATAGCTACACCCCAACAAAAGATAAGGCAATTTTGTGCCTAACCTTTTTTATTTTTAAGTAAAAAGTGAGAACGATGAAGTGGAAATACTTGATAGAACATCTTTCTGTGTTATTTTATTTCTTTCAAGTAACAAGAAACAAAGAAATATAAAAGAAGAAAAAAATATATCTTTCCTATTTTTCTTGCTCATCAACCAATTTAAGGATGCTCACAACAATGTGAACTCTCCTTTTTCTTGCTTGGTTTATCCATTCATTCATTCTACATTCCTCTCAACTGAATGAATCAGAAAGGCTCTTGCTTTCTTGCACAGGCAGCTGCACACCCAAGTTCTCAAGTCTTCCCATTGTAATACTGCAAAACGGCTCGGGAAGCGCCCGTCGATGAGTCGATAGCTCTTGAGCTACATTCTTCATTGTTGGCCTAAACTGAGGATTGGCATTCACACAATCCAGTGCCAATTTAGTGAGTGTGAGTATTTCTTCTCCCACTTCACTTGTAGGAGCTGATAAGCGCTTGTCTATGATATCTTCTAGCTGCAATGCTTTTATGTTCAACGGTTCGGAATGCATCGTCGCTGACAACAATGACGACGATGAGGTCGAAAGAGCATATATAAGCTCGCCAGGATGATGTCCCACGATTGTTTCAAGTATCACGACTCCAAAGCTATAGACATCACATTTTTCTGTGACCTTCATTGTATATGCAAGATCTGCAACCCGGATAAGATACAGTTAGAAGAACATTTTAATGATACTAGAGAGAAATGTTGATAGTTTGGTAAGTCAAGTACCTGGAGCTATGTATCCATAAGTACCAGCCGTTGCAGTCCAATTCGATGAGCTGAGGTTTACGAATCTAGCAATGCCGAAGTCGGAAAGGCGAGCTTCATAGTTTGTATCTAATAGTATATTGTTGCTCGAAACGTCTCGATGAATGATCGGAGGCACGCAATCATGATGCAAATAGTTCAGAGCATTGGCAACCCCTTTAACAACATTGATCCTTCTCATCCAATCCAATTCTTTTGCTCGCTCTTCGCTGCTCAAAATCTTAGCCAAGCTTCCTCTTTCCAAGTACTCGTAGACCAAGAGCGATCGCTGAGTGTGAAAACAGAATCCGTAAAGTTTAACGATGTTTCGATGTCGGATTTTTGTCAGTGCACTTATCTCACTCTCTGATATTGCTGATTGATCTTCCAAATTGGTGTGATGAACAACAGAATGCAGCTGCTTCACTGCCACAACTTGGCCTGTTGACAACTTTGCCTTGTAAACACTTCCATGTCCTCCAACCCCAATACAATGCTTCCCATCAAAGTCTTCAGTTGCAGCCCTTATGTCTTCATATACCAATCTTCCATCATAACTCCAAACTGAAAACAAATCTCCATTGTGTGAATCTCCCACCTTGGATTGCTTCTTTCTTCTTCCTTTTCTCATGGTACACACAATTCCAATGCCTATGCATAATGCCAAGACCAACACTGCAAAAGAAGGAATAACAATCAAAAGTACCATACTAATGGCTGCCTTCTTATCCTTCACAAGAACAGGGCAATTCTTCAAGCTGGTGTGGTTTCCACACAGGCCTTTGTTGTTCTCAAATGCCTCTGCTGATGCCTCTTGGAAGGCCTGGCTCTCAGGAATTGGACCTTCCAAGTCGTTATACGACAAGTCGACAAGCCGTAAACTTTCCATTCGATCTAAAGCGGATGGGATCGAACCGGAGAGCTTATTGTGGGAGAGGTTTAGTATTTCCAGTTTCATTAGATTTCCGAGTTGCCGGGGAATGACGCCGGAGAGCGCGTTGTGACTGAGATCCAACAGCAACTGCAGGGTGGCTAGATTGCCAAGCTCAACAGGGATGCTTTCTACAAAGTTGTTGTTCCTCAAGTTCAAGTATAAAAGTTTTGAGAGATCAGCTATTTGTTTTGGTATTGGCCCACTCAGGTTGTTGTCTGCTAGATCAATGTATGAAAGATCAGGAATCGTTCCAATTTCTAGAGGCATAGAACCAGAAAGCTTGTTGCTGCTCAAAGTCAGGTTGATCAATGACTTCAAATTTCCAACTTCTTGGGGAATTTGTCCTGAAAGATTGTTGAAAGACAGATCAAGAACATGCAAGACACTTGAATCTCCAAGTTCTGTTGGAATCTTCCCACCAATCTGGTTGTTGGAGATCTTCAAACTTTTGAGAAGTCGGCATTTCGCCCAATTCGGCGAAACTTCGCCGTAGAAATTATTGTAGCTCAGATCGATGTAATCCAAGTTGGGATATACGCCGAAATCTTCGGATATGTTTCCATGAAACTTGTTTCGATCGAGTCGAAGCCGAGTTAGAGCATTGCAATTCTTTAGGCCCTTTGGGACAGGACCACTGAAGTTGTTGTTACTAGCACAAAAGCATTGGAGTAAGCCTCCATGACACAAAGTTTGTGGTAAAGGGCCAGAGATGGTATTGTTTGAGAGGAAGAAATGAGTCAAATTGGTAAGTTTGTTGATCTCTTTAGGCAGCACACCAGACAACTGATTGCCAAAGAGGGACAAAACATCTAGGCCAGAAAGATCTCCAAACGACGCCGGGATCGAACCGGTCAGGTTGTTTAAGTGCAACCGGAGCTCAGCGAGAGATGTCAACTCTCCTAGCTCTGATGGGATTGAGCCAGAGAGGTGGTTTCTGCCAAGATCCAGAACTGAAAGCCTCCTCAAGTTTCGGATCCTCGTCGGGATCGAACCTGAAAGAAGGTTTTGTGATAAGCTCAACAAAGTAAGCTTCACCAGCCCTCCCAACTCCTCTGGGATACTCCCATCAAAGGCATTGCTGCTGAGGTTGAGCCTCAGCAGCTCAGGAAGCTCGCCGATGGAAGGTGGGACGGTCCCGAAAAGGCGGTTACCGTGGAGATCGAGAGTAAGGAGATTGGGGAATGAGGAGAAGTTGAAGTGTTCAAGAGTACCAATCAAACCAATGTCTGTGAGAATGATTTCTTTGACAGTTTGAGCATTGTTGCAACTGATGCCAACCCAATTGCAAGGAGTTTTTGTTAAGTTTGAATTGGGAAGTGGGAGTTTCCATGAAGGAAGGAGAGATTGAGTCTGGTTTTGAAGGCTAGACTTCCATTGCAGCAAAGCTTCAAGCTCTTCCTCTCTCTGTTTTTCAATTGAAGAACCAAATGAAAAATGAAAAATGAGGAAGATGAAGATGAAGAAAAGAGGTAAAACTGCCTTGAATTTCATGATCTAGCTAGAATTTAGAAACAAGAACGCAAAACATGAAAATTGGTACAAAAAGAACTTGGCCATCCCCAAAGATATATAAGAAACAGAGCTGAAGTTTTTTTTCCAACAACTGAAAGTGATTGGAGTGGCAATATTTGGCTGATATTGGTTTCCATTTTCTTTTTCCTTGGAGAATGGTCAGTGATGTGTTTGGATCCATGGAAAATAAAGGATTTTCTAGAATGGGATCAGTCAAAGAATAATATCATTCCACACAACCCACCAAAATTTTAAATCTCCAAAATTTTTAATGAAAATATTAATAAAATATCAACGACAGACCTAGGAATTTATATTGACAATATTTAAATTAATAGGAATTTTACCATTAAAATTTCTTATCGTATAATATCTATATTAGTAACTGGTACGTATTTTGTTCATTTTTTACAATATAATCGAAATTGTCAGATTCACTTCATAGGGTGATATCATCGAATCGTAGTTGGGATTCTCCCCCTCCCTTCCATTTAAAGACGAGTCTTGCAACATCGATTACAGTAGTGGATGATCATCGACACTTCCAAAGTTATTTTCAAGATTGGCATAGACTAGGTGATGGACTCCTCACCAAGTCAACAAGATTTGTCCTTTATTATAATTGGTTTTCTGTTCCAAAGTGGCTTCAAATCACATTTACAATGATGCCCTTAGCTGTGCATTTCC

mRNA sequence

ATGGTACACACAATTCCAATGCCTATGCATAATGCCAAGACCAACACTGCAAAAGAAGGAATAACAATCAAAAGTACCATACTAATGGCTGCCTTCTTATCCTTCACAAGAACAGGGCAATTCTTCAAGCTGGTGTGGTTTCCACACAGGCCTTTGTTGTTCTCAAATGCCTCTGCTGATGCCTCTTGGAAGGCCTGGCTCTCAGGAATTGGACCTTCCAAGTCGTTATACGACAAGTCGACAAGCCGTAAACTTTCCATTCGATCTAAAGCGGATGGGATCGAACCGGAGAGCTTATTGTGGGAGAGGTTTAGTATTTCCAGTTTCATTAGATTTCCGAGTTGCCGGGGAATGACGCCGGAGAGCGCGTTGTGA

Coding sequence (CDS)

ATGGTACACACAATTCCAATGCCTATGCATAATGCCAAGACCAACACTGCAAAAGAAGGAATAACAATCAAAAGTACCATACTAATGGCTGCCTTCTTATCCTTCACAAGAACAGGGCAATTCTTCAAGCTGGTGTGGTTTCCACACAGGCCTTTGTTGTTCTCAAATGCCTCTGCTGATGCCTCTTGGAAGGCCTGGCTCTCAGGAATTGGACCTTCCAAGTCGTTATACGACAAGTCGACAAGCCGTAAACTTTCCATTCGATCTAAAGCGGATGGGATCGAACCGGAGAGCTTATTGTGGGAGAGGTTTAGTATTTCCAGTTTCATTAGATTTCCGAGTTGCCGGGGAATGACGCCGGAGAGCGCGTTGTGA

Protein sequence

MVHTIPMPMHNAKTNTAKEGITIKSTILMAAFLSFTRTGQFFKLVWFPHRPLLFSNASADASWKAWLSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLLWERFSISSFIRFPSCRGMTPESAL
Homology
[Close]
BLAST of MC00g_new0677 vs. NCBI nr
Match: ABK94514.1 (unknown [Populus trichocarpa])

HSP 1 Score: 63.5 bits (153), Expect = 5.44e-10
Identity = 42/94 (44.68%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 11  NAKTNTAKEGITIKST----ILMAAFLSFTRTGQFFKLVWFPHRPLLFSNASADASWKAW 70
           N K+   K G TIK T     L+   L F R   F  L   PH P+L  NAS +A WKA 
Sbjct: 29  NTKSKLPKRGSTIKITSLLLFLLTVVLLFGRLHGFRPLA-LPHIPILSLNASNEALWKAL 88

Query: 71  LSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLL 100
           +SG+GP   L D ST  KL++  K  GI PES+L
Sbjct: 89  ISGMGPCSLLDDISTVVKLNMSLKVLGIRPESML 121

[Close]
BLAST of MC00g_new0677 vs. NCBI nr
Match: KAF3612326.1 (hypothetical protein FXO37_36833 [Capsicum annuum])

HSP 1 Score: 53.1 bits (126), Expect = 4.33e-06
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 48  PHRPLLFSNASADASWKAWLSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLLWERFSIS 107
           P RPLL SN   +A  KA L GIGPS SLYD +TS K    S + G+ PE  LWE F   
Sbjct: 46  PQRPLLPSN---EALIKALLLGIGPSNSLYDNTTSCKPVKLSNSSGMRPERPLWEIFKFD 105

Query: 108 SFIRFPS 114
              +  S
Sbjct: 106 KSSKLAS 109

[Close]
BLAST of MC00g_new0677 vs. NCBI nr
Match: RWR97630.1 (hypothetical protein CKAN_02707400 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 49.3 bits (116), Expect = 5.41e-05
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 69  GIGPSKSLYDKSTSRKLSIRSKADGIEPESLL 100
           G GPS SLYDKST  KLS+ SK DGIEPES+L
Sbjct: 38  GRGPSNSLYDKSTDDKLSMPSKEDGIEPESML 69

[Close]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match: A0A6N2LI34 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.12e-12
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0 

Query: 48  PHRPLLFSNASADASWKAWLSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLLWERFSIS 107
           PH+P+L  NAS +A WKA +SGIGPS SLYD ST  KL+   K  GI PES+   +F  S
Sbjct: 22  PHKPILSLNASYEALWKALISGIGPSSSLYDISTDDKLNRSLKELGIIPESMFSNKFEHS 81

Query: 108 SFIRFPSCRGMTP 120
                PSC G+ P
Sbjct: 82  -----PSCFGIDP 89

[Close]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match: A0A6N2LIF8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.65e-12
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 48  PHRPLLFSNASADASWKAWLSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLL------- 107
           PH+P+L  NAS +A WKA +SGIGPS SLYD ST  KL+   K  GI PES+L       
Sbjct: 22  PHKPILSLNASYEALWKALISGIGPSSSLYDISTDDKLNRSLKELGIIPESMLLYNSFNP 81

Query: 108 ----------W--ERFSISSFIRFPSCRGMTPESAL 124
                     W  +R    + + FPS  G++PE+ L
Sbjct: 82  PNSVGMVPCKWFEDRSIKCNRVAFPSSSGISPETLL 117

[Close]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match: A0A6N2LUD4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.93e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 48  PHRPLLFSNASADASWKAWLSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLL 100
           PH+P+L  NAS +A WKA +SGIGPS SLYD ST  KL+   K  GI PES+L
Sbjct: 22  PHKPILSLNASYEALWKALISGIGPSSSLYDISTDDKLNRSLKELGIIPESML 74

[Close]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match: A9PDR1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.63e-10
Identity = 42/94 (44.68%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 11  NAKTNTAKEGITIKST----ILMAAFLSFTRTGQFFKLVWFPHRPLLFSNASADASWKAW 70
           N K+   K G TIK T     L+   L F R   F  L   PH P+L  NAS +A WKA 
Sbjct: 29  NTKSKLPKRGSTIKITSLLLFLLTVVLLFGRLHGFRPLA-LPHIPILSLNASNEALWKAL 88

Query: 71  LSGIGPSKSLYDKSTSRKLSIRSKADGIEPESLL 100
           +SG+GP   L D ST  KL++  K  GI PES+L
Sbjct: 89  ISGMGPCSLLDDISTVVKLNMSLKVLGIRPESML 121

[Close]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match: A0A3S3PTY9 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02707400 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.62e-05
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 69  GIGPSKSLYDKSTSRKLSIRSKADGIEPESLL 100
           G GPS SLYDKST  KLS+ SK DGIEPES+L
Sbjct: 38  GRGPSNSLYDKSTDDKLSMPSKEDGIEPESML 69

The following BLAST results are available for this feature:
BLAST of MC00g_new0677 vs.
Match NameE-valueIdentityDescription
BLAST of MC00g_new0677 vs. NCBI nr
Match NameE-valueIdentityDescription
ABK94514.15.44e-1044.68unknown [Populus trichocarpa][more]
KAF3612326.14.33e-0647.76hypothetical protein FXO37_36833 [Capsicum annuum][more]
RWR97630.15.41e-0575.00hypothetical protein CKAN_02707400 [Cinnamomum micranthum f. kanehirae][more]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6N2LI342.12e-1252.05Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=... [more]
A0A6N2LIF88.65e-1242.71Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=... [more]
A0A6N2LUD45.93e-1160.38Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=... [more]
A9PDR12.63e-1044.68Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1[more]
A0A3S3PTY92.62e-0575.00Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_... [more]
BLAST of MC00g_new0677 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g_new0677.1MC00g_new0677.1mRNA