MC00g_new0668 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0668
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Locationscaffold31: 174450 .. 175439 (-)
RNA-Seq ExpressionMC00g_new0668
SyntenyMC00g_new0668
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCAAGTAAAATGTAGCTCATTCTTTCAACAGTTCAAACAAATTCCCCAATTTAGGGGAAAAAGACAAAATCTCTAATCGTTCAACGGCTAGTGAAGCAGAGCCGTCGGATCATTCGACCGTTACAAGTCCAACGCTTAAAAATGTCAAAATTACAATTCTACCCTCAAAAGCGTTTTCCTCGAGATCTCCGCCGCCGCACATTTCCCGATTAAATCCAACGGTAATCTCCTCCCCTCCGCTCTATAAATTCAGCCTTTCGTCGTCTCCTTCAATTCGCAGACAAGAAAAAGAAAAAAACAAAGCTTTCTTCTCTGTTCTTCATTCAATTCTGTAAATTCTCTCCAGAAATTTAATTTAATTCTCTCAATGGCCGTTTCGAGAAGTATCGTTGTTCTTGTGTTGGCGCTGCTGATTTCTTCTGCTGCGGCAGCGCATCATTCACACACAATTAAGCCGCCGGCTCCTGCGCCGTCTCCGGCAGCCGTGCAGCCTCCGTCGTCTTTGCCGCCGTCGATAGCTGGTCCTCCTGCTGAAGCGCCCGGACCGGCTGCAAGCGGCGCCGTTTTGGGTAGAGGATTTAGTGTTGCTGGATCTATGGCTTTTGGGATTTTCGCTGCTGCTTTGATTGTTTAAGTTATTATTATTTTTTACCTCTCTGATGGGCTCTTTCTCATGTTTTTTTAATACTTATTAATCATATTAATTTATTTTTATTAATTTTTATATCATTGAGATTATGATTATTTGCCTTATGGACTCATTTTGAGTTATCGACGATCATTGTCGTAGCTGATGGTTAAAGACATTTAACTCCTTTCCGGAGGTTTGATCTTTCATTTCCACCTCCCACCTTGTAAGTCCTAAATTTTTTTGATCTGTTTTGGATTAAATTCTCACACCTTCCCATAGAAATTGTAATAATTAAAAAAAATTACAATGGCTCGCATATCTATTTTTGACGAAAGAAAAAAAATTGTTAGTTCGAAT

mRNA sequence

ATGGCCGTTTCGAGAAGTATCGTTGTTCTTGTGTTGGCGCTGCTGATTTCTTCTGCTGCGGCAGCGCATCATTCACACACAATTAAGCCGCCGGCTCCTGCGCCGTCTCCGGCAGCCGTGCAGCCTCCGTCGTCTTTGCCGCCGTCGATAGCTGGTCCTCCTGCTGAAGCGCCCGGACCGGCTGCAAGCGGCGCCGTTTTGGGTAGAGGATTTAGTGTTGCTGGATCTATGGCTTTTGGGATTTTCGCTGCTGCTTTGATTGTTTAA

Coding sequence (CDS)

ATGGCCGTTTCGAGAAGTATCGTTGTTCTTGTGTTGGCGCTGCTGATTTCTTCTGCTGCGGCAGCGCATCATTCACACACAATTAAGCCGCCGGCTCCTGCGCCGTCTCCGGCAGCCGTGCAGCCTCCGTCGTCTTTGCCGCCGTCGATAGCTGGTCCTCCTGCTGAAGCGCCCGGACCGGCTGCAAGCGGCGCCGTTTTGGGTAGAGGATTTAGTGTTGCTGGATCTATGGCTTTTGGGATTTTCGCTGCTGCTTTGATTGTTTAA

Protein sequence

MAVSRSIVVLVLALLISSAAAAHHSHTIKPPAPAPSPAAVQPPSSLPPSIAGPPAEAPGPAASGAVLGRGFSVAGSMAFGIFAAALIV
Homology
BLAST of MC00g_new0668 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.47e-08
Identity = 52/90 (57.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 4   SRSIVVL--VLALLISSAAAAHHSHTIKPPAPAPSPAAVQPPSSLPPSIAGPPAEAPGPA 63
           SRS +VL  VLAL+ SSA A HH    K PAPAPSPA V+ PS  P SI+G P EAP PA
Sbjct: 92  SRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPA 151

Query: 64  ASGAVLGRGFSVAGSMAFGI---FAAALIV 88
           A+GA L     V+GSMA  +   FAAAL V
Sbjct: 152 ANGAGL-----VSGSMAVSVGIFFAAALFV 176

BLAST of MC00g_new0668 vs. NCBI nr
Match: KAE8009232.1 (hypothetical protein FH972_005681 [Carpinus fangiana])

HSP 1 Score: 52.8 bits (125), Expect = 1.65e-06
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 15 LISSAAAAH-HSHTIKP-PAPAPSPAAVQPPSSLPPSIAGPPAEAPGPAASGAVLGR-GF 74
          L+S  + AH HSH+  P P+P PS A    P+S P SIA PP+EAPGPA +GAVL R GF
Sbjct: 30 LLSPKSPAHSHSHSSSPSPSPVPSGA----PASSPTSIAAPPSEAPGPAQNGAVLNRVGF 89

Query: 75 SVAGSMAFGIFAAALI 87
            AGS+A G+FAAAL+
Sbjct: 90 --AGSVAVGVFAAALV 99

BLAST of MC00g_new0668 vs. NCBI nr
Match: CAB4320065.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 50.1 bits (118), Expect = 3.27e-05
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  APAPSPAAVQPPS---------SLPPS-IAGPPAEAPGPAASGAVLGRGFSVAGSMAFGI 88
           AP+ SPAA  PPS         ++PPS ++GPP+EAP PA +GAVL R FS AGSMA G+
Sbjct: 64  APSQSPAAGSPPSPPSASPQSPAIPPSSVSGPPSEAPAPATNGAVLNR-FSAAGSMAVGV 123

BLAST of MC00g_new0668 vs. NCBI nr
Match: XP_034229389.1 (classical arabinogalactan protein 1-like [Prunus dulcis])

HSP 1 Score: 49.3 bits (116), Expect = 6.47e-05
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 32  APAPSPAAVQPPSSL----------PPSIAGPPAEAPGPAASGAVLGRGFSVAGSMAFGI 88
           AP+ SP AV PPS L          P S++GPP+EAP PA +GAVL R FS AGS+A G+
Sbjct: 64  APSQSPVAVSPPSPLSVSPESPAIPPSSVSGPPSEAPAPATNGAVLNR-FSAAGSVAVGV 123

BLAST of MC00g_new0668 vs. NCBI nr
Match: CAB4289697.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 48.5 bits (114), Expect = 1.28e-04
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  APAPSPAAVQPPS---------SLPPS-IAGPPAEAPGPAASGAVLGRGFSVAGSMAFGI 88
           AP+ SPAA  PPS         ++PPS ++GPP+EAP PA +GAVL R FS AGS+A G+
Sbjct: 64  APSQSPAAGSPPSPPSASPQSPAIPPSSVSGPPSEAPAPATNGAVLNR-FSAAGSVAVGV 123

BLAST of MC00g_new0668 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.14e-09
Identity = 52/90 (57.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 4  SRSIVVL--VLALLISSAAAAHHSHTIKPPAPAPSPAAVQPPSSLPPSIAGPPAEAPGPA 63
          SRS +VL  VLAL+ SSA A HH    K PAPAPSPA V+ PS  P SI+G P EAP PA
Sbjct: 3  SRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPA 62

Query: 64 ASGAVLGRGFSVAGSMAFGI---FAAALIV 88
          A+GA L     V+GSMA  +   FAAAL V
Sbjct: 63 ANGAGL-----VSGSMAVSVGIFFAAALFV 87

BLAST of MC00g_new0668 vs. ExPASy TrEMBL
Match: A0A5N6QTH5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005681 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.98e-07
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 15 LISSAAAAH-HSHTIKP-PAPAPSPAAVQPPSSLPPSIAGPPAEAPGPAASGAVLGR-GF 74
          L+S  + AH HSH+  P P+P PS A    P+S P SIA PP+EAPGPA +GAVL R GF
Sbjct: 30 LLSPKSPAHSHSHSSSPSPSPVPSGA----PASSPTSIAAPPSEAPGPAQNGAVLNRVGF 89

Query: 75 SVAGSMAFGIFAAALI 87
            AGS+A G+FAAAL+
Sbjct: 90 --AGSVAVGVFAAALV 99

BLAST of MC00g_new0668 vs. ExPASy TrEMBL
Match: A0A6J5Y7W9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS48489 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.58e-05
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  APAPSPAAVQPPS---------SLPPS-IAGPPAEAPGPAASGAVLGRGFSVAGSMAFGI 88
           AP+ SPAA  PPS         ++PPS ++GPP+EAP PA +GAVL R FS AGSMA G+
Sbjct: 64  APSQSPAAGSPPSPPSASPQSPAIPPSSVSGPPSEAPAPATNGAVLNR-FSAAGSMAVGV 123

BLAST of MC00g_new0668 vs. ExPASy TrEMBL
Match: M5VY26 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G065400 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.19e-05
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  APAPSPAAVQPPS---------SLPPS-IAGPPAEAPGPAASGAVLGRGFSVAGSMAFGI 88
           AP+ SP AV PPS         ++PPS ++GPP+EAP P+ +GAVL R FS AGS+A G+
Sbjct: 64  APSQSPVAVSPPSPPSASPESPAIPPSSVSGPPSEAPAPSTNGAVLNR-FSAAGSVAVGV 123

BLAST of MC00g_new0668 vs. ExPASy TrEMBL
Match: A0A6J5VPS2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49105 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.19e-05
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  APAPSPAAVQPPS---------SLPPS-IAGPPAEAPGPAASGAVLGRGFSVAGSMAFGI 88
           AP+ SPAA  PPS         ++PPS ++GPP+EAP PA +GAVL R FS AGS+A G+
Sbjct: 64  APSQSPAAGSPPSPPSASPQSPAIPPSSVSGPPSEAPAPATNGAVLNR-FSAAGSVAVGV 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN43805.21.47e-0857.78hypothetical protein Csa_017194, partial [Cucumis sativus][more]
KAE8009232.11.65e-0657.89hypothetical protein FH972_005681 [Carpinus fangiana][more]
CAB4320065.13.27e-0555.22unnamed protein product [Prunus armeniaca][more]
XP_034229389.16.47e-0552.24classical arabinogalactan protein 1-like [Prunus dulcis][more]
CAB4289697.11.28e-0453.73unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
A0A0A0K4271.14e-0957.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1[more]
A0A5N6QTH57.98e-0757.89Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005681 PE=4 SV=1[more]
A0A6J5Y7W91.58e-0555.22Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS48489 PE=... [more]
M5VY266.19e-0552.24Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G065400 PE=4 SV=1[more]
A0A6J5VPS26.19e-0553.73Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49105 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g_new0668.1MC00g_new0668.1mRNA