MC00g_new0667 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0667
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	scaffold31: 159705 .. 160531 (+)
RNA-Seq Expression	MC00g_new0667
Synteny	MC00g_new0667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATTACGTGAAAAAAAGAAGAAATAATTCGAACAAAAATGGAAATAATACTAAGATCGGATGAAACTGGAAGCTCCCTTTACAAACGCCAAACTACAACTTCAAAAAAAAAATAATAATAAAATTAAAATAAATAAATAAAATGAAGGACAGAATAGTAATTTGGCACATAAAAGCGAAACCGAACGCCGGAGCGGGGACCTACATGAGGAAAGCCGCGGCGAAGAGAGAACCGGCGACGGCGAAAGAATTGGAAGCAGCAGTGTTTCCGGCAGCAGCCGGAGCATCGGCGGGAGGGGAGGAGATGGAGGATGGAGGGAGGGCCGGTGACGGAGAAGACGAAGGCGGACCAGCGAGAGAATGCTTACCGGTGGCCGGCGACGGCGCGGATTTCGGCGAAACCCTAGGCGAATCGGCGGCCGGCGAAGGAGAAGCGGCGTGCGAATGTTTCTTCGGAGACTGAGCGGCGGCGGAGGTTATCAGTATGAGCGCCATTAGGGCAAGGACTGTAAATCGTACGGAAGCCATTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTAGAGAGAGATTTCTGAGGGAAGAGGGTGAGAGATGGGAGGGGAATATATAGAGAAGGAGAAAAAGAGGAGTTGAAGTTGCACAAGGAGCGCGTGCTGCTGACGCCCCTACATTTTGGACATTTTGGACATTTTGGACATTTCTCATGCTATTATATTTCTGACGACACCTAGTATTTCTAATTCTTTCTCCAAATTTTTTAAAATTATCAGAATTTTTTAATCTTTTTC

mRNA sequence

ATGAAGGACAGAATAGTAATTTGGCACATAAAAGCGAAACCGAACGCCGGAGCGGGGACCTACATGAGGAAAGCCGCGGCGAAGAGAGAACCGGCGACGGCGAAAGAATTGGAAGCAGCAGTGTTTCCGGCAGCAGCCGGAGCATCGGCGGGAGGGGAGGAGATGGAGGATGGAGGGAGGGCCGGTGACGGAGAAGACGAAGGCGGACCAGCGAGAGAATGCTTACCGGTGGCCGGCGACGGCGCGGATTTCGGCGAAACCCTAGGCGAATCGGCGGCCGGCGAAGGAGAAGCGGCGTGCGAATGTTTCTTCGGAGACTGA

Coding sequence (CDS)

ATGAAGGACAGAATAGTAATTTGGCACATAAAAGCGAAACCGAACGCCGGAGCGGGGACCTACATGAGGAAAGCCGCGGCGAAGAGAGAACCGGCGACGGCGAAAGAATTGGAAGCAGCAGTGTTTCCGGCAGCAGCCGGAGCATCGGCGGGAGGGGAGGAGATGGAGGATGGAGGGAGGGCCGGTGACGGAGAAGACGAAGGCGGACCAGCGAGAGAATGCTTACCGGTGGCCGGCGACGGCGCGGATTTCGGCGAAACCCTAGGCGAATCGGCGGCCGGCGAAGGAGAAGCGGCGTGCGAATGTTTCTTCGGAGACTGA

Protein sequence

MKDRIVIWHIKAKPNAGAGTYMRKAAAKREPATAKELEAAVFPAAAGASAGGEEMEDGGRAGDGEDEGGPARECLPVAGDGADFGETLGESAAGEGEAACECFFGD

Homology

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BLAST of MC00g_new0667 vs. NCBI nr
Match: XP_027339431.1 (circumsporozoite protein-like [Abrus precatorius])

HSP 1 Score: 46.6 bits (109), Expect = 7.77e-04
Identity = 40/85 (47.06%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 34  AKELEAAVFPAAAGASAGGEEMEDGGRAGDGEDEG---GPARECLPVAGDGADFGET--- 93
           A  LE A F    GASAGGEEMEDGG AGDGED     G   E    AGDGA  G     
Sbjct: 2   ANPLETAPFSDGPGASAGGEEMEDGGTAGDGEDGDVGVGDGGELTTEAGDGAAAGGVFDE 61

Query: 94  ----------LGESAAGEGEAACEC 102
                     LG +AAG G+ A +C
Sbjct: 62  GGDEALGVADLGAAAAGLGDDAGDC 86

The following BLAST results are available for this feature:

BLAST of MC00g_new0667 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027339431.1	7.77e-04	47.06	circumsporozoite protein-like [Abrus precatorius]	[more]

BLAST of MC00g_new0667 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC00g_new0667 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0667.1	MC00g_new0667.1	mRNA