MC00g_new0612 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0612
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptioncinnamoyl-CoA reductase-like SNL6
Locationscaffold15: 1091976 .. 1092326 (+)
RNA-Seq ExpressionMC00g_new0612
SyntenyMC00g_new0612
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATTCGTATACTTGTGAAATCGGACAACAGAGACCTTAGAGGACTAGTAGCATTGATGGCTAGTACAGATCAGGAGAATCTGACATCAGCTCAAGTTAAACGGTTGGGAAGTACAGAGAAAAAGGGAAATGAGAATTTAATAGGTCATCGAGTTCATACCTCAACTGTCAGACGTTCAGGTAAGCTGGTGAAGTCGCATAGACGAATTAGTGCATTGAAGGGTACGAATTCTGATTTTAGTGTGGCGACATGCTTGGGTGGGACTGCTAAGCCTAATGTAGAGAGAAAATCTTCTTTCAGAAGTCAGTGGGTTCGATCAATGAAAGAAGCAGCGGGAATCACTTAG

mRNA sequence

ATGACTATTCGTATACTTGTGAAATCGGACAACAGAGACCTTAGAGGACTAGTAGCATTGATGGCTAGTACAGATCAGGAGAATCTGACATCAGCTCAAGTTAAACGGTTGGGAAGTACAGAGAAAAAGGGAAATGAGAATTTAATAGGTCATCGAGTTCATACCTCAACTGTCAGACGTTCAGGTAAGCTGGTGAAGTCGCATAGACGAATTAGTGCATTGAAGGGTACGAATTCTGATTTTAGTGTGGCGACATGCTTGGGTGGGACTGCTAAGCCTAATGTAGAGAGAAAATCTTCTTTCAGAAGTCAGTGGGTTCGATCAATGAAAGAAGCAGCGGGAATCACTTAG

Coding sequence (CDS)

ATGACTATTCGTATACTTGTGAAATCGGACAACAGAGACCTTAGAGGACTAGTAGCATTGATGGCTAGTACAGATCAGGAGAATCTGACATCAGCTCAAGTTAAACGGTTGGGAAGTACAGAGAAAAAGGGAAATGAGAATTTAATAGGTCATCGAGTTCATACCTCAACTGTCAGACGTTCAGGTAAGCTGGTGAAGTCGCATAGACGAATTAGTGCATTGAAGGGTACGAATTCTGATTTTAGTGTGGCGACATGCTTGGGTGGGACTGCTAAGCCTAATGTAGAGAGAAAATCTTCTTTCAGAAGTCAGTGGGTTCGATCAATGAAAGAAGCAGCGGGAATCACTTAG

Protein sequence

MTIRILVKSDNRDLRGLVALMASTDQENLTSAQVKRLGSTEKKGNENLIGHRVHTSTVRRSGKLVKSHRRISALKGTNSDFSVATCLGGTAKPNVERKSSFRSQWVRSMKEAAGIT
Homology
[Close]
BLAST of MC00g_new0612 vs. NCBI nr
Match: XP_022157059.1 (uncharacterized protein LOC111023870 [Momordica charantia])

HSP 1 Score: 116 bits (291), Expect = 8.26e-29
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 4   RILVKSDNRDLRGLVALMASTDQENLTSAQVKRLGSTEKKGNENLIGHRVHTSTVRRSGK 63
           R+   S  RDL+G   LMA TDQ+NL SA VK+L STEK GNENLIGH+VHTS VRRSG+
Sbjct: 61  RVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEK-GNENLIGHQVHTSAVRRSGE 120

Query: 64  LVKSHRRISALKGTNSDFSVATCLGGTAKPNVERKSSFRSQW 105
           LVKSHRRISA KGT    SV T LGG+AK + E  SSF+ +W
Sbjct: 121 LVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGE--SSFKGRW 159

[Close]
BLAST of MC00g_new0612 vs. NCBI nr
Match: XP_022152155.1 (cinnamoyl-CoA reductase-like SNL6 [Momordica charantia])

HSP 1 Score: 117 bits (292), Expect = 3.19e-28
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 0 

Query: 4   RILVKSDNRDLRGLVALMASTDQENLTSAQVKRLGSTEKKGNENLIGHRVHTSTVRRSGK 63
           +++     R LR   ALMA TDQ+NL S QVK+L ST KKGNENLIGHRVHTS VR  G+
Sbjct: 30  KVVAYGSRRYLRRPAALMAKTDQKNLPSPQVKQLRST-KKGNENLIGHRVHTSAVRCLGE 89

Query: 64  LVKSHRRISALKGTNSDFSVATCLGGTAKPNVERKSSFRSQWVRS 108
           LVKSHRRISALKGT S  SVAT L G+AK + E  SSFRS W+RS
Sbjct: 90  LVKSHRRISALKGTGSISSVATYLSGSAKSSGE--SSFRSHWIRS 131

[Close]
BLAST of MC00g_new0612 vs. ExPASy TrEMBL
Match: A0A6J1DVE9 (uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023870 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 4.00e-29
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 4   RILVKSDNRDLRGLVALMASTDQENLTSAQVKRLGSTEKKGNENLIGHRVHTSTVRRSGK 63
           R+   S  RDL+G   LMA TDQ+NL SA VK+L STEK GNENLIGH+VHTS VRRSG+
Sbjct: 61  RVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEK-GNENLIGHQVHTSAVRRSGE 120

Query: 64  LVKSHRRISALKGTNSDFSVATCLGGTAKPNVERKSSFRSQW 105
           LVKSHRRISA KGT    SV T LGG+AK + E  SSF+ +W
Sbjct: 121 LVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGE--SSFKGRW 159

[Close]
BLAST of MC00g_new0612 vs. ExPASy TrEMBL
Match: A0A6J1DD48 (cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.54e-28
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 0 

Query: 4   RILVKSDNRDLRGLVALMASTDQENLTSAQVKRLGSTEKKGNENLIGHRVHTSTVRRSGK 63
           +++     R LR   ALMA TDQ+NL S QVK+L ST KKGNENLIGHRVHTS VR  G+
Sbjct: 30  KVVAYGSRRYLRRPAALMAKTDQKNLPSPQVKQLRST-KKGNENLIGHRVHTSAVRCLGE 89

Query: 64  LVKSHRRISALKGTNSDFSVATCLGGTAKPNVERKSSFRSQWVRS 108
           LVKSHRRISALKGT S  SVAT L G+AK + E  SSFRS W+RS
Sbjct: 90  LVKSHRRISALKGTGSISSVATYLSGSAKSSGE--SSFRSHWIRS 131

The following BLAST results are available for this feature:
BLAST of MC00g_new0612 vs.
Match NameE-valueIdentityDescription
BLAST of MC00g_new0612 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157059.18.26e-2964.71uncharacterized protein LOC111023870 [Momordica charantia][more]
XP_022152155.13.19e-2865.71cinnamoyl-CoA reductase-like SNL6 [Momordica charantia][more]
BLAST of MC00g_new0612 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVE94.00e-2964.71uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DD481.54e-2865.71cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944... [more]
BLAST of MC00g_new0612 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g_new0612.1MC00g_new0612.1mRNA