MC00g_new0588 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0588
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	scaffold15: 396480 .. 397117 (-)
RNA-Seq Expression	MC00g_new0588
Synteny	MC00g_new0588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGGAAATCATGCAAAAAGAGGGAGTGACAAAGGGAAGAAGATTGTAGAAGATTTGGTAGAAGAGGATGTTCGAGAAGAGGCCCCTCCAATGGACGATGTTGTGGCCAATGAAGAAGGAAATGACGGACAAACGCCAGACAAGAAGACGAAGAAGAAGAAATTCAAGAAGAGGATCAGTAGATGGTTGAGGAGGCTCAGTGATCGTGTTGGTGCTATTGAGGCCACCTTGGGTGGCATTGAAATCGCCCTGAAAGGTATCCAAAGGACCTTAAGAAAATGTCAAAGGTAAGCATCTTTTTTATTATATAAACTTCATTTAGTTTAGTTTTTACTGTTTTACTACAATAACTCTTATGGATCGTATTTTTTCTTCATGGGAAGTTCCCCAATCCGAGTAAATATTTTGGAGGTGGGGGTGGGCCCGATGGAGATGGTCACTCAAATGAAAGGCCTGATGAGGACTCGAAGACAATTGGAGGTCTAAAGAATATGGATGAGGACCAAAGACCTGATGAGGTTTCGAAGACTCCCGAGGAATCGAAGAATACAGACGAGTATCAGAAAGATGGATCAGGGTCCAAAAAACATGAACGAGGATCCGAAGACGGATCAGGGTCCGAAAACGGATGA

mRNA sequence

ATGGAAAGGGGAAATCATGCAAAAAGAGGGAGTGACAAAGGGAAGAAGATTGTAGAAGATTTGGTAGAAGAGGATGTTCGAGAAGAGGCCCCTCCAATGGACGATGTTGTGGCCAATGAAGAAGGAAATGACGGACAAACGCCAGACAAGAAGACGAAGAAGAAGAAATTCAAGAAGAGGATCAGTAGATGGTTGAGGAGGCTCAGTGATCGTGTTGGTGCTATTGAGGCCACCTTGGGTGGCATTGAAATCGCCCTGAAAGGTGGGGGTGGGCCCGATGGAGATGGTCACTCAAATGAAAGGCCTGATGAGGACTCGAAGACAATTGGAGGTCTAAAGAATATGGATGAGGACCAAAGACCTGATGAGGTTTCGAAGACTCCCGAGGAATCGAAGAATACAGACGAGTATCAGAAAGATGGATCAGGGTCCAAAAAACATGAACGAGGATCCGAAGACGGATCAGGGTCCGAAAACGGATGA

Coding sequence (CDS)

ATGGAAAGGGGAAATCATGCAAAAAGAGGGAGTGACAAAGGGAAGAAGATTGTAGAAGATTTGGTAGAAGAGGATGTTCGAGAAGAGGCCCCTCCAATGGACGATGTTGTGGCCAATGAAGAAGGAAATGACGGACAAACGCCAGACAAGAAGACGAAGAAGAAGAAATTCAAGAAGAGGATCAGTAGATGGTTGAGGAGGCTCAGTGATCGTGTTGGTGCTATTGAGGCCACCTTGGGTGGCATTGAAATCGCCCTGAAAGGTGGGGGTGGGCCCGATGGAGATGGTCACTCAAATGAAAGGCCTGATGAGGACTCGAAGACAATTGGAGGTCTAAAGAATATGGATGAGGACCAAAGACCTGATGAGGTTTCGAAGACTCCCGAGGAATCGAAGAATACAGACGAGTATCAGAAAGATGGATCAGGGTCCAAAAAACATGAACGAGGATCCGAAGACGGATCAGGGTCCGAAAACGGATGA

Protein sequence

MERGNHAKRGSDKGKKIVEDLVEEDVREEAPPMDDVVANEEGNDGQTPDKKTKKKKFKKRISRWLRRLSDRVGAIEATLGGIEIALKGGGGPDGDGHSNERPDEDSKTIGGLKNMDEDQRPDEVSKTPEESKNTDEYQKDGSGSKKHERGSEDGSGSENG

Homology

[Close]

BLAST of MC00g_new0588 vs. NCBI nr
Match: XP_022153201.1 (uncharacterized protein LOC111020757 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 5.14e-15
Identity = 55/115 (47.83%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 38  ANEEGNDGQTPDKKTKKKKFKKRISRWLRRLSDRVGAIEATLGGIEIALKG--------- 97
           A    NDG+  +K+ KK KFKKRISR L+RL + VGAIE  LG   +ALKG         
Sbjct: 354 ARPSANDGEGLEKRLKKNKFKKRISRRLKRLDNCVGAIEDKLGDFGVALKGIQIYLKKLA 413

Query: 98  -------------GGGPDGDGHSNERPDEDSKTIGGLKNMDEDQRPDEVSKTPEE 130
                        GGGPD DG S++RPDE  K  GG K+MDEDQR DE  +T E+
Sbjct: 414 KGKFPDSSKYFGGGGGPDDDGPSDQRPDESPKPDGGRKSMDEDQRSDEDQRTDED 468

[Close]

BLAST of MC00g_new0588 vs. ExPASy TrEMBL
Match: A0A6J1DJX9 (uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020757 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.49e-15
Identity = 55/115 (47.83%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 38  ANEEGNDGQTPDKKTKKKKFKKRISRWLRRLSDRVGAIEATLGGIEIALKG--------- 97
           A    NDG+  +K+ KK KFKKRISR L+RL + VGAIE  LG   +ALKG         
Sbjct: 354 ARPSANDGEGLEKRLKKNKFKKRISRRLKRLDNCVGAIEDKLGDFGVALKGIQIYLKKLA 413

Query: 98  -------------GGGPDGDGHSNERPDEDSKTIGGLKNMDEDQRPDEVSKTPEE 130
                        GGGPD DG S++RPDE  K  GG K+MDEDQR DE  +T E+
Sbjct: 414 KGKFPDSSKYFGGGGGPDDDGPSDQRPDESPKPDGGRKSMDEDQRSDEDQRTDED 468

The following BLAST results are available for this feature:

BLAST of MC00g_new0588 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0588 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153201.1	5.14e-15	47.83	uncharacterized protein LOC111020757 [Momordica charantia]	[more]

BLAST of MC00g_new0588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJX9	2.49e-15	47.83	uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of MC00g_new0588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0588.1	MC00g_new0588.1	mRNA