MC00g_new0431 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0431
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	disease resistance protein RGA2-like
Location	scaffold7: 660465 .. 660788 (+)
RNA-Seq Expression	MC00g_new0431
Synteny	MC00g_new0431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGAGTACCTATACCTACTCACAGCCATACGCGTAGAGGACGTCGTCAATTAGAGCAAGATGCTCCAAACGAGCCTAACATTCCTGAACCTGAAGCTATATATCATAATGTCGATGGCGTTCCACCTTTTATAAAGACACAAAATGATGTTGGCCCATGCACGCCTATGGTTATGATACCGACTCCTAGTTCGAGCCATGTTCACACACCAGTACAGTATGGTTATGATGGTGATGGATGTGGGCGTGGAGAGTATGGACAATACCTCAACCCTATTGAGGATCAACAAACATCAGAGACATTGAGAGCTCCTCGTTGA

mRNA sequence

ATGTATAGAGTACCTATACCTACTCACAGCCATACGCGTAGAGGACGTCGTCAATTAGAGCAAGATGCTCCAAACGAGCCTAACATTCCTGAACCTGAAGCTATATATCATAATGTCGATGGCGTTCCACCTTTTATAAAGACACAAAATGATGTTGGCCCATGCACGCCTATGGTTATGATACCGACTCCTAGTTCGAGCCATGTTCACACACCAGTACAGTATGGTTATGATGGTGATGGATGTGGGCGTGGAGAGTATGGACAATACCTCAACCCTATTGAGGATCAACAAACATCAGAGACATTGAGAGCTCCTCGTTGA

Coding sequence (CDS)

ATGTATAGAGTACCTATACCTACTCACAGCCATACGCGTAGAGGACGTCGTCAATTAGAGCAAGATGCTCCAAACGAGCCTAACATTCCTGAACCTGAAGCTATATATCATAATGTCGATGGCGTTCCACCTTTTATAAAGACACAAAATGATGTTGGCCCATGCACGCCTATGGTTATGATACCGACTCCTAGTTCGAGCCATGTTCACACACCAGTACAGTATGGTTATGATGGTGATGGATGTGGGCGTGGAGAGTATGGACAATACCTCAACCCTATTGAGGATCAACAAACATCAGAGACATTGAGAGCTCCTCGTTGA

Protein sequence

MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVMIPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR

Homology

[Close]

BLAST of MC00g_new0431 vs. NCBI nr
Match: XP_022152034.1 (disease resistance protein RGA2-like [Momordica charantia])

HSP 1 Score: 233 bits (593), Expect = 6.24e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 60
           MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM
Sbjct: 866 MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 925

Query: 61  IPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR 107
           IPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR
Sbjct: 926 IPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR 972

[Close]

BLAST of MC00g_new0431 vs. NCBI nr
Match: XP_022149984.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 6.09e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 60
           MY V  P      RGRRQ++QDAP E + P PE IYHNV+ +PPF +TQ+D G  TPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

Query: 61  IPTPSS 66
           IPTP S
Sbjct: 390 IPTPGS 395

[Close]

BLAST of MC00g_new0431 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 4.60e-04
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 1  MYRVPI-PTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMV 60
          MY +PI P   H  RGR ++E+         E + +YHNV+ VPP  +TQ+  G  +PM+
Sbjct: 1  MYDLPIVPPRVH--RGRVRVEEV--------ELDEVYHNVEEVPPTTQTQSQTGYGSPMM 60

Query: 61 MIPTPSSSHVHTPVQYGYDGDGCG 83
          M+PT  + +  + V  GY   G G
Sbjct: 61 MMPTFGAGYCDSEVSTGYYDAGIG 74

[Close]

BLAST of MC00g_new0431 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 4.91e-04
Identity = 31/89 (34.83%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 4  VPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVMIPT 63
          VP P H    RGR ++E+         E + +YHNV+ VPP  +TQ+  G   PM M+PT
Sbjct: 7  VPQPVH----RGRVRVEEA--------ELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPT 66

Query: 64 PSSSHVHTPVQYGYDGDGCGRGEYGQYLN 92
            + +  + V  GY   G G      Y+N
Sbjct: 67 FGAGYCDSEVDTGYYDVGVGSSS--SYMN 81

[Close]

BLAST of MC00g_new0431 vs. ExPASy TrEMBL
Match: A0A6J1DEU3 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019843 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 3.02e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 60
           MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM
Sbjct: 866 MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 925

Query: 61  IPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR 107
           IPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR
Sbjct: 926 IPTPSSSHVHTPVQYGYDGDGCGRGEYGQYLNPIEDQQTSETLRAPR 972

[Close]

BLAST of MC00g_new0431 vs. ExPASy TrEMBL
Match: A0A6J1D8N6 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018266 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.95e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 60
           MY V  P      RGRRQ++QDAP E + P PE IYHNV+ +PPF +TQ+D G  TPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

Query: 61  IPTPSS 66
           IPTP S
Sbjct: 390 IPTPGS 395

[Close]

BLAST of MC00g_new0431 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.23e-04
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 1  MYRVPI-PTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMV 60
          MY +PI P   H  RGR ++E+         E + +YHNV+ VPP  +TQ+  G  +PM+
Sbjct: 1  MYDLPIVPPRVH--RGRVRVEEV--------ELDEVYHNVEEVPPTTQTQSQTGYGSPMM 60

Query: 61 MIPTPSSSHVHTPVQYGYDGDGCG 83
          M+PT  + +  + V  GY   G G
Sbjct: 61 MMPTFGAGYCDSEVSTGYYDAGIG 74

[Close]

BLAST of MC00g_new0431 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.38e-04
Identity = 31/89 (34.83%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 4  VPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVMIPT 63
          VP P H    RGR ++E+         E + +YHNV+ VPP  +TQ+  G   PM M+PT
Sbjct: 7  VPQPVH----RGRVRVEEA--------ELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPT 66

Query: 64 PSSSHVHTPVQYGYDGDGCGRGEYGQYLN 92
            + +  + V  GY   G G      Y+N
Sbjct: 67 FGAGYCDSEVDTGYYDVGVGSSS--SYMN 81

The following BLAST results are available for this feature:

BLAST of MC00g_new0431 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0431 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152034.1	6.24e-69	100.00	disease resistance protein RGA2-like [Momordica charantia]	[more]
XP_022149984.1	6.09e-15	57.58	serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia]	[more]
KAA0049532.1	4.60e-04	36.90	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK16354.1	4.91e-04	34.83	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of MC00g_new0431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DEU3	3.02e-69	100.00	disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1D8N6	2.95e-15	57.58	serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ...	[more]
A0A5D3CXX3	2.23e-04	36.90	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CZG9	2.38e-04	34.83	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of MC00g_new0431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0431.1	MC00g_new0431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding