MC00g_new0421 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0421
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Locationscaffold7: 26665 .. 27693 (-)
RNA-Seq ExpressionMC00g_new0421
SyntenyMC00g_new0421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGTTCCCCGTCTCATTTTCCGTCATTGTACGTCTGCTTCAGTTATATCCCATTTTCTGTCTTCGTACGTTTCAGACCTTCATTTACCATCGGTGAACAACATTTCAGGCGACATATTCTTGTTGAACTGCTTCTCCTTTCCGGCATCGAGGAGTGGGTTCCTCGTCTACGGTCCCCTTTCTATTTACACCAATAGTAAGGTAATAGTCTTCTCGTTCGGTTTTGTATTTATGTGTATATATTGAATATATGTGTATATAACTTATATGTGTATATATTTTATAGTTATTAGTATATAAGATATGGTACCAATCTCAATCCGTTCCAATATTTACGTGTTTAGAGTTTTCATTCGAATTGCTTAGTTCTTGGGTTTCTGGAACTTCTAAAATGATTTTTTGTTTTGCTAATTGCTTAAATGTGTGCCAATGGTGCTTCTTTTCATATGCTTTATGAATGTGTCAAGTTGTTGTTATAAAGTGGTTCATTTGGTGATTGATATTCTTTGTTGTAGGTTAAATTGTAAACTTGAATGATTTTGAAGTATTTGTTTCTATATATGGGAATATATTGTCTACGTGGTATAAATTGTATACTTAATTGAAGATCGTTTATTTGCCTCTGAGACCATCATAGATTTGTTAAAGGAAACCCCTAGTTGAGATAGAGAGAGTGGAGTGATCTCAAAGAGTTTTCGATTTTCATATTTCAAATGTCGACTTTGATATTGAGAGAAATATATATTATATATCGTTTTTCGAATCAAATCAAACGATATTTCTCATTTGCTGCCACTCAACAACAGCAGGTCTCAGCTCTGCACATTCCTAGAAATTTGTTCTTTCTTTCAACTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACTACATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAACTTTGGAATGTACTTATTCATCCTCCTTGGAATGA

mRNA sequence

ATGTACGTTCCCCGTCTCATTTTCCGTCATTGTACGTCTGCTTCAGTTATATCCCATTTTCTGTCTTCGTACGTTTCAGACCTTCATTTACCATCGGTGAACAACATTTCAGGCGACATATTCTTGTTGAACTGCTTCTCCTTTCCGGCATCGAGGAGTGGGTTCCTCGTCTACGGTCCCCTTTCTATTTACACCAATAGTAAGCTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACTACATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAACTTTGGAATGTACTTATTCATCCTCCTTGGAATGA

Coding sequence (CDS)

ATGTACGTTCCCCGTCTCATTTTCCGTCATTGTACGTCTGCTTCAGTTATATCCCATTTTCTGTCTTCGTACGTTTCAGACCTTCATTTACCATCGGTGAACAACATTTCAGGCGACATATTCTTGTTGAACTGCTTCTCCTTTCCGGCATCGAGGAGTGGGTTCCTCGTCTACGGTCCCCTTTCTATTTACACCAATAGTAAGCTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACTACATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAACTTTGGAATGTACTTATTCATCCTCCTTGGAATGA

Protein sequence

MYVPRLIFRHCTSASVISHFLSSYVSDLHLPSVNNISGDIFLLNCFSFPASRSGFLVYGPLSIYTNSKLKIVIIWYESPGYADMVAIQSSGSIVADMITTLTHTIVKDRKMEPLTLECTYSSSLE
Homology
[Close]
BLAST of MC00g_new0421 vs. NCBI nr
Match: KAF3452167.1 (hypothetical protein FNV43_RR08265 [Rhamnella rubrinervis])

HSP 1 Score: 85.1 bits (209), Expect = 2.39e-17
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 68  KLKIVIIWYESPGYADMVAIQSSGSIVADMITTLTHTIVKDRKMEPLTLE 117
           +LKIVIIWYESPG ADMVAIQSSGS+VADMIT LTHTIVK RKMEPL ++
Sbjct: 147 ELKIVIIWYESPGCADMVAIQSSGSMVADMITALTHTIVKHRKMEPLNVD 196

[Close]
BLAST of MC00g_new0421 vs. NCBI nr
Match: XP_030439504.1 (uncharacterized protein LOC115661349 [Syzygium oleosum])

HSP 1 Score: 77.0 bits (188), Expect = 1.57e-13
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 65  TNSKLKIVIIWYESPGYADMVAIQSSGSIVADMITTLTHTIVKDRKMEP 113
           +  KLKIVIIWYESPG  DMV IQSSGS+VADMIT LTHTIVK RK+ P
Sbjct: 319 SQKKLKIVIIWYESPGCEDMVVIQSSGSMVADMITALTHTIVKHRKIFP 367

[Close]
BLAST of MC00g_new0421 vs. NCBI nr
Match: TQE06473.1 (hypothetical protein C1H46_007972 [Malus baccata])

HSP 1 Score: 55.8 bits (133), Expect = 4.64e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 84  MVAIQSSGSIVADMITTLTHTIVKDRKMEPLTLE 117
           MVAIQSSGS+VADMIT LTHTIVK RKMEPL ++
Sbjct: 39  MVAIQSSGSMVADMITPLTHTIVKHRKMEPLNVD 72

[Close]
BLAST of MC00g_new0421 vs. ExPASy TrEMBL
Match: A0A540N7F5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_007972 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.25e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 84  MVAIQSSGSIVADMITTLTHTIVKDRKMEPLTLE 117
           MVAIQSSGS+VADMIT LTHTIVK RKMEPL ++
Sbjct: 39  MVAIQSSGSMVADMITPLTHTIVKHRKMEPLNVD 72

The following BLAST results are available for this feature:
BLAST of MC00g_new0421 vs.
Match NameE-valueIdentityDescription
BLAST of MC00g_new0421 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3452167.12.39e-1784.00hypothetical protein FNV43_RR08265 [Rhamnella rubrinervis][more]
XP_030439504.11.57e-1377.55uncharacterized protein LOC115661349 [Syzygium oleosum][more]
TQE06473.14.64e-0782.35hypothetical protein C1H46_007972 [Malus baccata][more]
BLAST of MC00g_new0421 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A540N7F52.25e-0782.35Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_007972 PE=4 SV=1[more]
BLAST of MC00g_new0421 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g_new0421.1MC00g_new0421.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane