MC00g_new0383 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0383
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	scaffold18: 82801 .. 83892 (-)
RNA-Seq Expression	MC00g_new0383
Synteny	MC00g_new0383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAAACGTGCTCGGGCATTGTCAACCGAGCCTATGGAGAGTGTTTTAACCGTGGCAGCACTAGATCTCTTAGCGCGACCCAATAGTGCGGCCATGACGGTTGCCCTCGTACCTTCATCCAAATCAGGTAGGCGGCCGCAGCATCCACATTACCTAGAAGCAGCAGATCTAGCACGAGTGTGATGGTTTCTGACCAATCTAACCAGGAAAAAAGTGTGAGCTCTGGGAGCGCTCGTGGAATTCCAGTGGCCCAATATCCTAGCTTGATGAAGAGATGGAAGAAAAAATGGTTTTTTGTCAATGGTGACTATTTGGCCCCGATGTTAGTTAATTGCGGTTCCTTTGTTTTCATGGTCGAGTTCTGTCAATGATTCTTTACTGTCCCAATTTGTCACCTCTACCGGTTATTATTGTTACTATATATGTATTATTGTATATTATTATCATTTTTTTACTTTAGTGTTTTTTATGGGCAGTGTGGGTTCAACCGACCTCTGATGATGATGTTGAGTTATTAAGAAACGTTTAGAGTTGTTGTCCGTAAGTGATCCAGGCAACATTTCTTTGATCGCTCGTGGTATTTGAGACTGTACAAACTATCTCATATTAGCTATCCTATTCCAAACTTAGAGGTGAGGGAACTCGTGGGCGAAGGGATTAGTTGTGAGAACCTACTTCGTTTAGGTATAACACTTATGCTTTCCTGTTTTGCTTTATCGCCCCATTTGTGCATTTAGTGTATATCGTTTCATATTTTTTGTGGGTGCAGACTCTGAAGCCATGACACCCACCACATCTGTTGTTGACTGCCTTCGTGCTCAAGCAGCGAAGCAGGCGGCTTCTCAGGCCACTGACCAAGGCGGATCCTCTAGGGTACAAGAGGTACCTCCTTGCCAACGTCATCGTACCGGAGGCTCCTCCCAAGGAGAAACTGTGCCAGTAACTTCGCTTCTGCCTCCTCCTGCTGTCAGACTGCCACGACCCTCGACAGTGTCCCTAGTCGGGGCGTCACCCAATACTTCACCGACCGGATATGCCCTTCTCTACCTTTGGATTTCGTGGACCATATGTGACCTCCTTCCCTTCTAG

mRNA sequence

ATGCCGAAACGTGCTCGGGCATTGTCAACCGAGCCTATGGAGAGTGTTTTAACCGTGGCAGCACTAGATCTCTTAGCGCGACCCAATAGTGCGGCCATGACGGTTGCCCTCGTACCTTCATCCAAATCAGACTCTGAAGCCATGACACCCACCACATCTGTTGTTGACTGCCTTCGTGCTCAAGCAGCGAAGCAGGCGGCTTCTCAGGCCACTGACCAAGGCGGATCCTCTAGGGTACAAGAGGTACCTCCTTGCCAACGTCATCGTACCGGAGGCTCCTCCCAAGGAGAAACTGTGCCAGTAACTTCGCTTCTGCCTCCTCCTGCTGTCAGACTGCCACGACCCTCGACAGTGTCCCTAGTCGGGGCGTCACCCAATACTTCACCGACCGGATATGCCCTTCTCTACCTTTGGATTTCGTGGACCATATGTGACCTCCTTCCCTTCTAG

Coding sequence (CDS)

ATGCCGAAACGTGCTCGGGCATTGTCAACCGAGCCTATGGAGAGTGTTTTAACCGTGGCAGCACTAGATCTCTTAGCGCGACCCAATAGTGCGGCCATGACGGTTGCCCTCGTACCTTCATCCAAATCAGACTCTGAAGCCATGACACCCACCACATCTGTTGTTGACTGCCTTCGTGCTCAAGCAGCGAAGCAGGCGGCTTCTCAGGCCACTGACCAAGGCGGATCCTCTAGGGTACAAGAGGTACCTCCTTGCCAACGTCATCGTACCGGAGGCTCCTCCCAAGGAGAAACTGTGCCAGTAACTTCGCTTCTGCCTCCTCCTGCTGTCAGACTGCCACGACCCTCGACAGTGTCCCTAGTCGGGGCGTCACCCAATACTTCACCGACCGGATATGCCCTTCTCTACCTTTGGATTTCGTGGACCATATGTGACCTCCTTCCCTTCTAG

Protein sequence

MPKRARALSTEPMESVLTVAALDLLARPNSAAMTVALVPSSKSDSEAMTPTTSVVDCLRAQAAKQAASQATDQGGSSRVQEVPPCQRHRTGGSSQGETVPVTSLLPPPAVRLPRPSTVSLVGASPNTSPTGYALLYLWISWTICDLLPF

Homology

[Close]

BLAST of MC00g_new0383 vs. NCBI nr
Match: XP_022140214.1 (uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140215.1 uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140216.1 uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140217.1 uncharacterized protein LOC111010939 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 2.90e-07
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 50  PTTSVVDCLRAQAAKQAASQATDQGGSSRVQEVPPCQRHRTGGSSQGETVPVTSLLPP-- 109
           P+TS +D LRAQAAK+A S   +Q G S   ++PP QR RTG SSQ E +P+     P  
Sbjct: 2   PSTSFIDRLRAQAAKRATSHCAEQDGCSGTADLPPHQRRRTGDSSQ-EYLPLP--FDPQA 61

Query: 110 -PAVRLP--------RPSTVSLVGASPNT 127
            PAVR P        RPS V L GASPNT
Sbjct: 62  FPAVRPPPLSTSSQSRPSMVPLAGASPNT 87

[Close]

BLAST of MC00g_new0383 vs. ExPASy TrEMBL
Match: A0A6J1CEH1 (uncharacterized protein LOC111010939 OS=Momordica charantia OX=3673 GN=LOC111010939 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.40e-07
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 50  PTTSVVDCLRAQAAKQAASQATDQGGSSRVQEVPPCQRHRTGGSSQGETVPVTSLLPP-- 109
           P+TS +D LRAQAAK+A S   +Q G S   ++PP QR RTG SSQ E +P+     P  
Sbjct: 2   PSTSFIDRLRAQAAKRATSHCAEQDGCSGTADLPPHQRRRTGDSSQ-EYLPLP--FDPQA 61

Query: 110 -PAVRLP--------RPSTVSLVGASPNT 127
            PAVR P        RPS V L GASPNT
Sbjct: 62  FPAVRPPPLSTSSQSRPSMVPLAGASPNT 87

The following BLAST results are available for this feature:

BLAST of MC00g_new0383 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0383 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140214.1	2.90e-07	50.56	uncharacterized protein LOC111010939 [Momordica charantia] >XP_022140215.1 uncha...	[more]

BLAST of MC00g_new0383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEH1	1.40e-07	50.56	uncharacterized protein LOC111010939 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of MC00g_new0383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0383.1	MC00g_new0383.1	mRNA