MC00g0467 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0467
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-H2 finger protein ATL74-like
Location	scaffold196: 113309 .. 113452 (-)
RNA-Seq Expression	MC00g0467
Synteny	MC00g0467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGTTCGTCTCCCACTCTTCGTGCCCTAATTGCCGGCATTCTCTGCTG

mRNA sequence

GAATGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGTTCGTCTCCCACTCTTCGTGCCCTAATTGCCGGCATTCTCTGCTG

Coding sequence (CDS)

GAATGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGTTCGTCTCCCACTCTTCGTGCCCTAATTGCCGGCATTCTCTGCTG

Protein sequence

ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL

Homology

[Close]

BLAST of MC00g0467 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-17
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           ECAICLGEF  G+ +R+LP C+H FH++CID W VSHSSCPNCRHSL+
Sbjct: 104 ECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of MC00g0467 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-16
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           ECAICL EF  GD+LR+LP C HGFHV CID W  SHSSCP+CR  L+
Sbjct: 110 ECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 157

[Close]

BLAST of MC00g0467 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-16
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           ECAICL EF  GD+LR+LP C HGFHV+CID W  SHSSCP+CR  L+
Sbjct: 103 ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILV 150

[Close]

BLAST of MC00g0467 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-15
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           EC ICLG+F  G+ +R+LP C+HGFHV CID W +SHSSCP CR SLL
Sbjct: 112 ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLL 159

[Close]

BLAST of MC00g0467 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-15
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           EC ICLG+FE G+ +R+LP C+HGFHV CID W +S SSCP CR SLL
Sbjct: 113 ECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of MC00g0467 vs. NCBI nr
Match: XP_022144089.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 113 bits (283), Expect = 3.00e-30
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 48
           ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL
Sbjct: 96  ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 143

[Close]

BLAST of MC00g0467 vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 2.67e-23
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 48
           +CAICLGEFE+GD +R+LPNC+HGFHV CID W +SHSSCPNCRHSLL
Sbjct: 107 DCAICLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154

[Close]

BLAST of MC00g0467 vs. NCBI nr
Match: KAA0025403.1 (RING-H2 finger protein ATL74 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.37e-23
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSL 47
           ECAICLGEFE G+DLRILP C+HGFHV+CID W VSHSSCPNCRHS+
Sbjct: 85  ECAICLGEFESGEDLRILPRCNHGFHVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MC00g0467 vs. NCBI nr
Match: XP_008463261.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo] >TYK09770.1 RING-H2 finger protein ATL74 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.37e-23
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSL 47
           ECAICLGEFE G+DLRILP C+HGFHV+CID W VSHSSCPNCRHS+
Sbjct: 85  ECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MC00g0467 vs. NCBI nr
Match: XP_011653722.1 (RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus] >KGN54449.1 hypothetical protein Csa_012932 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.29e-22
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSL 47
           ECAICLGEFE G+ LRI+P C+HGFHV+CID W VSHSSCPNCRHSL
Sbjct: 99  ECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSL 145

[Close]

BLAST of MC00g0467 vs. ExPASy TrEMBL
Match: A0A6J1CR99 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111013867 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.45e-30
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 48
           ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL
Sbjct: 96  ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 143

[Close]

BLAST of MC00g0467 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.29e-23
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 48
           +CAICLGEFE+GD +R+LPNC+HGFHV CID W +SHSSCPNCRHSLL
Sbjct: 107 DCAICLGEFEVGDKVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154

[Close]

BLAST of MC00g0467 vs. ExPASy TrEMBL
Match: A0A5A7SL64 (RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00400 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.63e-23
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSL 47
           ECAICLGEFE G+DLRILP C+HGFHV+CID W VSHSSCPNCRHS+
Sbjct: 85  ECAICLGEFESGEDLRILPRCNHGFHVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MC00g0467 vs. ExPASy TrEMBL
Match: A0A5D3CEJ5 (RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00540 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.63e-23
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSL 47
           ECAICLGEFE G+DLRILP C+HGFHV+CID W VSHSSCPNCRHS+
Sbjct: 85  ECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MC00g0467 vs. ExPASy TrEMBL
Match: A0A1S3CKD5 (RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.63e-23
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSL 47
           ECAICLGEFE G+DLRILP C+HGFHV+CID W VSHSSCPNCRHS+
Sbjct: 85  ECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MC00g0467 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-18
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           ECAICLGEF  G+ +R+LP C+H FH++CID W VSHSSCPNCRHSL+
Sbjct: 104 ECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of MC00g0467 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 6.3e-17
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           ECAICL EF  GD+LR+LP C HGFHV CID W  SHSSCP+CR  L+
Sbjct: 110 ECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILV 157

[Close]

BLAST of MC00g0467 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 6.3e-17
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           ECAICL EF  GD+LR+LP C HGFHV+CID W  SHSSCP+CR  L+
Sbjct: 103 ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILV 150

[Close]

BLAST of MC00g0467 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 8.2e-17
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           EC ICLG+F  G+ +R+LP C+HGFHV CID W +SHSSCP CR SLL
Sbjct: 112 ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLL 159

[Close]

BLAST of MC00g0467 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-16
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   ECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSHSSCPNCRHSLL 49
           EC ICLG+FE G+ +R+LP C+HGFHV CID W +S SSCP CR SLL
Sbjct: 113 ECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160

The following BLAST results are available for this feature:

BLAST of MC00g0467 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	3.6e-17	70.83	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9LM69	8.9e-16	68.75	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q8LC69	8.9e-16	68.75	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
Q9FLC6	1.2e-15	66.67	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.5e-15	66.67	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]

BLAST of MC00g0467 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144089.1	3.00e-30	100.00	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]
XP_022930638.1	2.67e-23	79.17	RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 fin...	[more]
KAA0025403.1	3.37e-23	82.98	RING-H2 finger protein ATL74 [Cucumis melo var. makuwa]	[more]
XP_008463261.1	3.37e-23	82.98	PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo] >TYK09770.1 RING-H2 finge...	[more]
XP_011653722.1	3.29e-22	80.85	RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus] >KGN54449.1 hypothetic...	[more]

BLAST of MC00g0467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR99	1.45e-30	100.00	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111013867...	[more]
A0A6J1EVU3	1.29e-23	79.17	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]
A0A5A7SL64	1.63e-23	82.98	RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3CEJ5	1.63e-23	82.98	RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CKD5	1.63e-23	82.98	RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1	[more]

BLAST of MC00g0467 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	2.6e-18	70.83	RING/U-box superfamily protein	[more]
AT1G20823.1	6.3e-17	68.75	RING/U-box superfamily protein	[more]
AT1G76410.1	6.3e-17	68.75	RING/U-box superfamily protein	[more]
AT5G05280.1	8.2e-17	66.67	RING/U-box superfamily protein	[more]
AT3G10910.1	1.1e-16	66.67	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 2..43 e-value: 4.3E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 1..44 e-value: 8.2E-15 score: 54.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 2..44 score: 11.66311
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..47 e-value: 7.2E-19 score: 69.1
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 1..48
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 1..48
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0467.1	MC00g0467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane