MC00g0373 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0373
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Phycobilisome rod-core linker polypeptide CpcG2 like
Location	scaffold7: 509826 .. 510095 (-)
RNA-Seq Expression	MC00g0373
Synteny	MC00g0373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATTGTTGAGCAATTATTTCATTCTCTCAATTTCCTTTTCCAGCCGTACGTTTCAAAGGTTTGCTGTGAGGACGTCAAAACAAATCGAGGATATATCTACCAAGGGTAGAAACTGTACCCTTTTTGCTTCATTTGCATCGATTTAACTTCTGTCGTTGGTTGCTGAGCTGATTTAACTTATGCTAACGAGACTTTGGAATTGCCTTGCAGCTGCGCAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCCAAAAATTTTGAG

mRNA sequence

TCATTGTTGAGCAATTATTTCATTCTCTCAATTTCCTTTTCCAGCCGTACGTTTCAAAGGTTTGCTGTGAGGACGTCAAAACAAATCGAGGATATATCTACCAAGGCTGCGCAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCCAAAAATTTTGAG

Coding sequence (CDS)

TCATTGTTGAGCAATTATTTCATTCTCTCAATTTCCTTTTCCAGCCGTACGTTTCAAAGGTTTGCTGTGAGGACGTCAAAACAAATCGAGGATATATCTACCAAGGCTGCGCAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCCAAAAATTTTGAG

Protein sequence

SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE

Homology

[Close]

BLAST of MC00g0373 vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 5.10e-16
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SR+FQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFE
Sbjct: 12 SYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLSKNFE 66

[Close]

BLAST of MC00g0373 vs. NCBI nr
Match: XP_023527736.1 (uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 1.03e-15
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  I++   +SRTFQRFAVRTSKQIEDIS KA+QKKQELAEQVKDLSKNF+
Sbjct: 12 SYLVNEVIVNSLANSRTFQRFAVRTSKQIEDISNKASQKKQELAEQVKDLSKNFD 66

[Close]

BLAST of MC00g0373 vs. NCBI nr
Match: XP_022145531.1 (uncharacterized protein LOC111014959 [Momordica charantia] >XP_022145532.1 uncharacterized protein LOC111014959 [Momordica charantia] >XP_022145533.1 uncharacterized protein LOC111014959 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.03e-15
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  ++    +SR+FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNFE
Sbjct: 12 SYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFE 66

[Close]

BLAST of MC00g0373 vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 2.95e-15
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SRTFQRFAVRTSKQIE+IS KAAQKKQELAEQVKDLSKNF+
Sbjct: 12 SYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKDLSKNFD 66

[Close]

BLAST of MC00g0373 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 4.19e-15
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SR FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNF+
Sbjct: 12 SYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFD 66

[Close]

BLAST of MC00g0373 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.47e-16
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SR+FQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFE
Sbjct: 12 SYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLSKNFE 66

[Close]

BLAST of MC00g0373 vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.47e-16
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SR+FQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFE
Sbjct: 12 SYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKDLSKNFE 66

[Close]

BLAST of MC00g0373 vs. ExPASy TrEMBL
Match: A0A6J1CWK8 (uncharacterized protein LOC111014959 OS=Momordica charantia OX=3673 GN=LOC111014959 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.98e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  ++    +SR+FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNFE
Sbjct: 12 SYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFE 66

[Close]

BLAST of MC00g0373 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.03e-15
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SR FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNF+
Sbjct: 12 SYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFD 66

[Close]

BLAST of MC00g0373 vs. ExPASy TrEMBL
Match: A0A1S3B691 (uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.88e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 55
          S L N  +++   +SR+FQRFAV+TSKQIEDISTKAAQKKQELAEQVKD SKNF+
Sbjct: 12 SYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKDFSKNFD 66

[Close]

BLAST of MC00g0373 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 5.7e-06
Identity = 24/55 (43.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  SLLSNYFILSISFSSRTFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFE 56
          S ++N FI++   +S  FQRFAVRTSK+IE++S  AA+ ++++A+Q+++ +KN +
Sbjct: 13 SYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFAKNID 67

The following BLAST results are available for this feature:

BLAST of MC00g0373 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0373 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949523.1	5.10e-16	76.36	uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar...	[more]
XP_023527736.1	1.03e-15	76.36	uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]	[more]
XP_022145531.1	1.03e-15	76.36	uncharacterized protein LOC111014959 [Momordica charantia] >XP_022145532.1 uncha...	[more]
XP_038903248.1	2.95e-15	74.55	uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara...	[more]
XP_022935686.1	4.19e-15	74.55	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]

BLAST of MC00g0373 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5H8	2.47e-16	76.36	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]
A0A6J1GCB5	2.47e-16	76.36	uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1CWK8	4.98e-16	76.36	uncharacterized protein LOC111014959 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1F5E7	2.03e-15	74.55	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A1S3B691	2.88e-15	72.73	uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=...	[more]

BLAST of MC00g0373 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	5.7e-06	43.64	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 29..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0373.1	MC00g0373.1	mRNA